Nasp (nuclear autoantigenic sperm protein)

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Gene: Nasp (nuclear autoantigenic sperm protein) Rattus norvegicus

Analyze

Symbol:

Nasp

Name:

nuclear autoantigenic sperm protein

RGD ID:

1359609

Description:

Predicted to enable histone binding activity and histone chaperone activity. Involved in male gonad development and response to testosterone. Predicted to be located in chromatin; cytoplasm; and nucleus. Predicted to be part of protein-containing complex. Predicted to be active in nucleoplasm. Orthologous to human NASP (nuclear autoantigenic sperm protein); PARTICIPATES IN histone modification pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,7-dihydropurine-6-thione.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

MGC93869; nuclear autoantigenic sperm protein (histone-binding)

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NASP (nuclear autoantigenic sperm protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Nasp (nuclear autoantigenic sperm protein (histone-binding))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nasp (nuclear autoantigenic sperm protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NASP (nuclear autoantigenic sperm protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NASP (nuclear autoantigenic sperm protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nasp (nuclear autoantigenic sperm protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NASP (nuclear autoantigenic sperm protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NASP (nuclear autoantigenic sperm protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Nasp (nuclear autoantigenic sperm protein (histone-binding))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	NASP (nuclear autoantigenic sperm protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	nasp (nuclear autoantigenic sperm protein (histone-binding))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	nasp-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG8223	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	nasp-2	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	130,057,363 - 130,083,003 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	130,057,363 - 130,082,928 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	132,682,003 - 132,707,029 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	5	134,436,600 - 134,461,622 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	5	134,458,993 - 134,484,015 (-)	NCBI	Rnor_WKY
Rnor_6.0	5	135,446,485 - 135,472,113 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	135,446,962 - 135,472,116 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	139,242,666 - 139,268,285 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	136,884,705 - 136,910,192 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	136,889,931 - 136,915,418 (-)	NCBI
Celera	5	128,585,369 - 128,610,666 (-)	NCBI		Celera
Cytogenetic Map	5	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease dominant intermediate C (ISO)

Female Infertility (ISO)

ovarian cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

17alpha-ethynylestradiol (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2-amino-14,16-dimethyloctadecan-3-ol (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,7-dihydropurine-6-thione (EXP)

3-chloropropane-1,2-diol (EXP)

3-methylcholanthrene (ISO)

4-hydroxyphenyl retinamide (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsenous acid (ISO)

azathioprine (ISO)

Benoxacor (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

caffeine (ISO)

calcitriol (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

chromium(6+) (ISO)

clothianidin (ISO)

cobalt dichloride (ISO)

copper atom (EXP,ISO)

copper(0) (EXP,ISO)

coumarin (ISO)

coumestrol (ISO)

cyclophosphamide (EXP)

cyclosporin A (ISO)

decabromodiphenyl ether (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

Enterolactone (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

geldanamycin (ISO)

genistein (ISO)

gentamycin (EXP)

geraniol (ISO)

hydrogen peroxide (ISO)

isobutanol (ISO)

ivermectin (ISO)

mercaptopurine (EXP)

methylmercury chloride (ISO)

miconazole (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodiethylamine (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

piroxicam (ISO)

purine-6-thiol (EXP)

resveratrol (ISO)

rotenone (EXP)

SB 431542 (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (EXP)

thapsigargin (EXP)

thimerosal (ISO)

thioacetamide (EXP)

topotecan (EXP)

triadimefon (ISO)

trichloroethene (EXP)

trimellitic anhydride (ISO)

troglitazone (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vancomycin (ISO)

venlafaxine hydrochloride (ISO)

vinclozolin (EXP)

vincristine (ISO)

vorinostat (ISO)

zearalenone (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

blastocyst development (ISO,ISS)

CENP-A containing chromatin assembly (IBA)

chromatin organization (ISO)

DNA replication (IEA)

DNA replication-dependent chromatin assembly (IBA,ISO,ISS)

G1/S transition of mitotic cell cycle (ISO)

male gonad development (IEP)

nucleosome assembly (ISO)

obsolete histone exchange (ISO)

protein transport (IEA)

response to testosterone (IEP)

Cellular Component

cellular_component (ND)

chromatin (ISO)

cytoplasm (ISO)

nucleoplasm (IBA,ISO)

nucleus (IEA,ISO,ISS)

protein-containing complex (ISO)

Molecular Function

histone binding (IBA,ISO,ISS)

histone chaperone activity (ISO,ISS)

molecular_function (ND)

protein binding (ISO)

protein-containing complex binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Overexpression of the Linker histone-binding protein tNASP affects progression through the cell cycle.	Alekseev OM, etal., J Biol Chem 2003 Mar 7;278(10):8846-52. Epub 2002 Dec 30.
2.	Analysis of the expression of human tumor antigens in ovarian cancer tissues.	Ali-Fehmi R, etal., Cancer Biomark. 2010;6(1):33-48. doi: 10.3233/CBM-2009-0117.
3.	Histone chaperones in nucleosome assembly and human disease.	Burgess RJ and Zhang Z, Nat Struct Mol Biol. 2013 Jan;20(1):14-22. doi: 10.1038/nsmb.2461.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	MicroRNA-29a inhibited epididymal epithelial cell proliferation by targeting nuclear autoantigenic sperm protein (NASP).	Ma W, etal., J Biol Chem. 2012 Mar 23;287(13):10189-99. doi: 10.1074/jbc.M111.303636. Epub 2011 Dec 22.
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	GOA pipeline	RGD automated data pipeline
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Comprehensive gene review and curation	RGD comprehensive gene curation
10.	Proteomic changes in rat spermatogenesis in response to in vivo androgen manipulation; impact on meiotic cells.	Stanton PG, etal., PLoS One. 2012;7(7):e41718. doi: 10.1371/journal.pone.0041718. Epub 2012 Jul 30.
11.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
12.	The antibody against a nuclear autoantigenic sperm protein can result in reproductive failure.	Wang M, etal., Asian J Androl. 2009 Mar;11(2):183-92. doi: 10.1038/aja.2008.59. Epub 2009 Feb 16.

Additional References at PubMed

PMID:10893414	PMID:14718166	PMID:15489334	PMID:16728391	PMID:25615412	PMID:27618665

Genomics

Comparative Map Data

Nasp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	130,057,363 - 130,083,003 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	130,057,363 - 130,082,928 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	132,682,003 - 132,707,029 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	5	134,436,600 - 134,461,622 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	5	134,458,993 - 134,484,015 (-)	NCBI	Rnor_WKY
Rnor_6.0	5	135,446,485 - 135,472,113 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	135,446,962 - 135,472,116 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	139,242,666 - 139,268,285 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	136,884,705 - 136,910,192 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	136,889,931 - 136,915,418 (-)	NCBI
Celera	5	128,585,369 - 128,610,666 (-)	NCBI		Celera
Cytogenetic Map	5	q35	NCBI

NASP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	45,584,041 - 45,618,893 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	1	45,583,846 - 45,618,904 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	46,049,713 - 46,084,565 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	45,822,304 - 45,857,154 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	44,333,703 - 44,368,554 (+)	NCBI		Celera
Cytogenetic Map	1	p34.1	NCBI
HuRef	1	44,161,002 - 44,195,831 (+)	NCBI		HuRef
CHM1_1	1	46,166,808 - 46,201,724 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	45,456,407 - 45,491,244 (+)	NCBI		T2T-CHM13v2.0

Nasp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	116,458,249 - 116,488,894 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	116,458,249 - 116,485,138 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	116,601,052 - 116,628,676 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	116,601,052 - 116,627,941 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	116,273,657 - 116,300,556 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	116,099,541 - 116,125,873 (-)	NCBI		MGSCv36	mm8
Celera	4	115,334,710 - 115,361,311 (-)	NCBI		Celera
Cytogenetic Map	4	D1	NCBI
cM Map	4	53.24	NCBI

Nasp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	12,667,050 - 12,697,769 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	12,667,050 - 12,697,021 (-)	NCBI	ChiLan1.0	ChiLan1.0

NASP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	46,242,482 - 46,278,736 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	46,242,841 - 46,278,737 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	44,885,433 - 44,920,159 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

NASP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	14,742,008 - 14,782,186 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	14,742,012 - 14,808,592 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	14,863,100 - 14,903,386 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	14,896,457 - 14,937,013 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	14,896,489 - 14,963,353 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	14,693,885 - 14,734,077 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	14,763,569 - 14,803,856 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	14,833,512 - 14,873,792 (-)	NCBI		UU_Cfam_GSD_1.0

Nasp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	60,885,180 - 60,918,554 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	26,710,229 - 26,743,254 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936474	26,710,364 - 26,743,336 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NASP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	165,770,055 - 165,805,383 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	165,773,964 - 165,804,978 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

NASP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	87,180,440 - 87,215,418 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	87,180,453 - 87,215,939 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	29,752,276 - 29,789,237 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Nasp
93 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	27
Count of miRNA genes:	23
Interacting mature miRNAs:	26
Transcripts:	ENSRNOT00000022170
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
7411601	Foco12	Food consumption QTL 12	19.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
7411564	Bw135	Body weight QTL 135		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	87468046	132468046	Rat
7411582	Foco3	Food consumption QTL 3	7.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
6903316	Bw113	Body weight QTL 113	2	0.0103	body mass (VT:0001259)	body weight (CMO:0000012)	5	87765973	132765973	Rat
631527	Tls1	T-lymphoma susceptibility QTL 1	0	0.001	thymus integrity trait (VT:0010555)	post-insult time to onset of T-cell lymphoma (CMO:0001907)	5	90450144	135450144	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	94858972	143070159	Rat
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	97059760	147465714	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	97570330	136479578	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	99216724	148607142	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	103689353	148689353	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	105999803	150999803	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	106906205	151906205	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	106906205	151906205	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	106906205	151906205	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	106906205	151906205	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	106906205	151906205	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	108845856	153845856	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	108845856	153845856	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	108938288	153938288	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	111416838	156416838	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	111416838	156416838	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	111416838	156416838	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	111416838	156416838	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	120740824	143608494	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	120740824	151018848	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
7394710	Emca12	Estrogen-induced mammary cancer QTL 12			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	124160767	133749643	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	124965598	166875058	Rat
1300122	Wbc1	White blood cell count QTL 1	2.75		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	5	125392826	139989768	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	126424772	166875058	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	127798274	166875058	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	127798274	166875058	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	128033842	133011550	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	128506074	166875058	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	128506074	166875058	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128924607	166875058	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	129132428	143070159	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	129132447	151006154	Rat

Markers in Region

AW531846

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	130,057,396 - 130,057,570 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	135,446,515 - 135,446,688	NCBI	Rnor6.0
Rnor_5.0	5	139,242,696 - 139,242,869	UniSTS	Rnor5.0
RGSC_v3.4	5	136,884,166 - 136,884,339	UniSTS	RGSC3.4
Celera	5	128,584,830 - 128,585,003	UniSTS
RH 3.4 Map	5	835.7	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH139010

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	44,863,041 - 44,863,232 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	48,238,610 - 48,238,800	NCBI	Rnor6.0
Rnor_5.0	X	48,439,320 - 48,439,510	UniSTS	Rnor5.0
RGSC_v3.4	X	66,949,853 - 66,950,043	UniSTS	RGSC3.4
Celera	X	45,515,014 - 45,515,204	UniSTS
Cytogenetic Map	X	q22	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH136150

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	130,058,470 - 130,059,440 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	135,447,589 - 135,448,558	NCBI	Rnor6.0
Rnor_5.0	5	139,243,770 - 139,244,739	UniSTS	Rnor5.0
RGSC_v3.4	5	136,885,240 - 136,886,209	UniSTS	RGSC3.4
Celera	5	128,585,904 - 128,586,874	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High											2
Medium	3	33	44	30	19	30	2	2	74	34	39	11	2
Low		10	13	11		11	6	9		1			6
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001005543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC120450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000022170 ⟹ ENSRNOP00000022170

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	130,057,940 - 130,082,928 (-)	Ensembl
Rnor_6.0 Ensembl	5	135,446,962 - 135,472,116 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000099538 ⟹ ENSRNOP00000078719

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	130,057,369 - 130,075,539 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000105479 ⟹ ENSRNOP00000079908

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	130,057,363 - 130,082,518 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119622 ⟹ ENSRNOP00000091359

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	130,057,363 - 130,082,518 (-)	Ensembl

RefSeq Acc Id:

NM_001005543 ⟹ NP_001005543

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	130,057,936 - 130,082,928 (-)	NCBI
Rnor_6.0	5	135,447,054 - 135,472,046 (-)	NCBI
Rnor_5.0	5	139,242,666 - 139,268,285 (-)	NCBI
RGSC_v3.4	5	136,884,705 - 136,910,192 (-)	RGD
Celera	5	128,585,369 - 128,610,666 (-)	RGD

Sequence:

show sequence

GGAAGACCTGTCACCTTCTCGGGTATCCCCGTCAGAAAGAAACCCTCGGGACTACTTTTTCCAC
AGTCGCAGAGACTCACTGGTTCCACTTAATTGTGGAATCTCTAGGCTGGCTCCCATTCAGAAGC
AGTATACTGCCCACTGGCCCACCACCTCAGGGGAACGATGGCCACAGAGTCTACAGCCACTGCT
GCCATCGCCGCGGAACTGGTTTCCGCTGACAAAGTTGAAGATGCTCCTGCTCCTTCTACCTCTG
CAGATAAAATGGAGAGTCTGGATGTGGATAGTGAAGCTAAGAAACTACTGGGATTAGGACAGAA
ACATCTGGTGATGGGTGACATTCCAGCAGCTGTTAATGCATTCCAAGAAGCAGCTAGTCTTTTA
GGTAAGAAGTATGGAGAAACGGCTAATGAGTGTGGAGAAGCCTTCTTTTTTTATGGGAAGTCAC
TTCTGGAGTTGGCCAGAATGGAGAATGGAGTGTTGGGAAATGCCTTAGAAGGAGTGCATGTAGA
AGAGGAAGAAGGAGAAAAAACAGAAGATGAATCTTTGGTAGAAAATAATGATAATGTAGATGAG
GAAGCAAGGGAAGAGTTGAGAGAACAGGTTTATGACGCCATGGGAGAAAAAGAAGCCAAAAAAG
CAGAAGGCCAGTCTCTGACAAAGCCTGAAACTGATAAAGAACAGGAAAGTGAAGTGGAGAAGGG
TGGAAGAGAAGATATGGATATAAGTGAGCCTGCAGAGAAGCTCCAGGAAAAAGTTGAATCGACT
TCAAAGCAGTTAACTGAATCCTCTGAAGAGGCAAAAGAAGCAGCAATACCAGGACTGAATGAAG
ATGAGGTCACTTCTGGGAAGACAGAACAGGAATCATTGTGTACTGAGGAAGGAAAATCCATTTC
TGGAGTTTATGTTCAAAATAAAGAATTCAGAGAAGCAGTGCCTCAGGAGGAGGGAGAGGAAATG
ATAAGCTTAGAAAAAAAGCCAAAAGAAACTTCAGAAGATCAGACTATTGGGGCTCCAGAAAAGC
AGGACACTTTAATGAAGGTGGTAGAAATAGAAGCTGAAATAGACTCTGAAGTCAAGTCAGTGGA
TGTGGGTGGGGAGGAGCCGAAGGATCAGGGAGCTATCTCTGAGAGTGAACTAGGAAAGGCTGTT
CTTATGCAACTCTCAGGGCAAGATGTTGAAGTATCACCAGTAGTGGCTGCAGAGGCTGGATCAG
AAGTCTCTGAGAAGCCAGGGCAGGAGATTACAGTTCTTCCCAACAATGGTCCAGTTGTTGGACA
ATCATCTGCAGGAGATCAAACTCCTAGTGAACCACAGAATTCTGCAGAAAGACTGTCAGAAACT
AAAGATGGCGCAAGTGTAGAGGAGGTCAAGGCAGAGCTGGTTCCTGAACAGGAGGAAGCTATGC
CTCCTGTAGAAGAGTCTGAGGCAGCTGGAGATGGGGTTGAGACCAAGGTAGCCCAGAGGGCCAC
GGAGAAAGCACCTGAAGACAAATTTAAGATAGCTGCTAATGAAGAGACACAAGAGAGAGACGAA
CAGATGAAAGAGGGTGAAGAAACTGAAGGCTCAGAGGAAGAAGACAAAGAAAATGACAAGGCTG
AAGAAACAACAAATGAATCAGTTCTTGAAAAAAAGACTCTTCAAGAAAATGAAGAAGAGGAGAT
TGGGAATTTAGAACTTGCCTGGGATATGCTAGATTTAGCCAAGATTATTTTTAAGAGGCAAGAA
ACAAAAGAAGCCCAGCTTTATGCTGCACAAGCCCATCTTAAACTTGGAGAAGTTAGTGTTGAAT
CTGAGAATTATATCCAAGCTGTGGAGGAGTTTCAGGCTTGCCTAAGCCTGCAAGAGCAGTATTT
GGAAGCTCACGATCGTCTCCTTGCGGAGACTCACTACCAGTTGGGTTTGGCCTATGGTTACAAC
TCTCAGTATGATGAGGCTGTAGCACAGTTTGGCAAATCTATTGACGTCATTGAGAAGAGAATGG
CTGTACTACTTGAGCAGATGAAGGAGGCTGAAGGATCATTTACTGAATACGAGAAAGAAATCGA
GGAGCTGAAAGAACTGCTCCCCGAGATTCGGGAGAAGATAGAGGATGCAAAGGAGTCTCAGCGG
AGTGGGAATGTAGCTGAGCTGGCTCTGAAGGCCACTCTGGTCGAGAGCTCTACTTCAGGTTTCA
CTCCTAGTGGAGCTGGTGCCTCGGTATCCATGATTGCCAGTAGAAAACCAACAGATGGCGCTTC
CTCATCAAACTGTGTCACTGATATTTCTCATCTTGTCAGAAAGAAGAGGAAACCAGAGGAAGAG
AGTCCCCGGAAAGATGATGCAAAGAAAGCTAAACCAGAACCAGAGGTGAATGGAGGCAGTGGAG
ATGCTGTCTCCAGTGGAAATGAAGTTTCAGAAAACATGGAGGCAGAGGCTGAGAATCAGGCTGA
GAGCCAGACAACAGCAGAAGGGACAGTGGACTCTGCAGCTACAGTTAAAAGCACTGCATGTTAA
GAGGCGAGCAGAACCTTCCTCCTGAGGGAAAGTGGTTTTGTACATAATGTATTTTTTCACTTTT
GGGGATTCTTTTTGTATAACTCCAATAAAGATTGTAGGCAACAAAAAAAAAAAAAAAAAAAAAA
AAA

hide sequence

RefSeq Acc Id:

XM_006238646 ⟹ XP_006238708

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	130,057,363 - 130,083,003 (-)	NCBI
Rnor_6.0	5	135,446,485 - 135,472,113 (-)	NCBI
Rnor_5.0	5	139,242,666 - 139,268,285 (-)	NCBI

Sequence:

show sequence

CTAGCCGTTGCTGCTGTACTCGTGCCCAGCTCTTGCGTTTCCATCCGTTAAGACTGAGAGGGCA
TAGGGAAGACCTGTCACCTTCTCGGGCAGTATACTGCCCACTGGCCCACCACCTCAGGGGAACG
ATGGCCACAGAGTCTACAGCCACTGCTGCCATCGCCGCGGAACTGGTTTCCGCTGACAAAGTTG
AAGATGCTCCTGCTCCTTCTACCTCTGCAGATAAAATGGAGAGTCTGGATGTGGATAGTGAAGC
TAAGAAACTACTGGGATTAGGACAGAAACATCTGGTGATGGGTGACATTCCAGCAGCTGTTAAT
GCATTCCAAGAAGCAGCTAGTCTTTTAGGTAAGAAGTATGGAGAAACGGCTAATGAGTGTGGAG
AAGCCTTCTTTTTTTATGGGAAGTCACTTCTGGAGTTGGCCAGAATGGAGAATGGAGTGTTGGG
AAATGCCTTAGAAGGAGTGCATGTAGAAGAGGAAGAAGGAGAAAAAACAGAAGATGAATCTTTG
GTAGAAAATAATGATAATGTAGATGAGGAAGCAAGGGAAGAGTTGAGAGAACAGGTTTATGACG
CCATGGGAGAAAAAGAAGCCAAAAAAGCAGAAGGCCAGTCTCTGACAAAGCCTGAAACTGATAA
AGAACAGGAAAGTGAAGTGGAGAAGGGTGGAAGAGAAGATATGGATATAAGTGAGCCTGCAGAG
AAGCTCCAGGAAAAAGTTGAATCGACTTCAAAGCAGTTAACTGAATCCTCTGAAGAGGCAAAAG
AAGCAGCAATACCAGGACTGAATGAAGATGAGGTCACTTCTGGGAAGACAGAACAGGAATCATT
GTGTACTGAGGAAGGAAAATCCATTTCTGGAGTTTATGTTCAAAATAAAGAATTCAGAGAAGCA
GTGCCTCAGGAGGAGGGAGAGGAAATGATAAGCTTAGAAAAAAAGCCAAAAGAAACTTCAGAAG
ATCAGACTATTGGGGCTCCAGAAAAGCAGGACACTTTAATGAAGGTGGTAGAAATAGAAGCTGA
AATAGACTCTGAAGTCAAGTCAGTGGATGTGGGTGGGGAGGAGCCGAAGGATCAGGGAGCTATC
TCTGAGAGTGAACTAGGAAAGGCTGTTCTTATGCAACTCTCAGGGCAAGATGTTGAAGTATCAC
CAGTAGTGGCTGCAGAGGCTGGATCAGAAGTCTCTGAGAAGCCAGGGCAGGAGATTACAGTTCT
TCCCAACAATGGTCCAGTTGTTGGACAATCATCTGCAGGAGATCAAACTCCTAGTGAACCACAG
AATTCTGCAGAAAGACTGTCAGAAACTAAAGATGGCGCAAGTGTAGAGGAGGTCAAGGCAGAGC
TGGTTCCTGAACAGGAGGAAGCTATGCCTCCTGTAGAAGAGTCTGAGGCAGCTGGAGATGGGGT
TGAGACCAAGGTAGCCCAGAGGGCCACGGAGAAAGCACCTGAAGACAAATTTAAGATAGCTGCT
AATGAAGAGACACAAGAGAGAGACGAACAGATGAAAGAGGGTGAAGAAACTGAAGGCTCAGAGG
AAGAAGACAAAGAAAATGACAAGGCTGAAGAAACAACAAATGAATCAGTTCTTGAAAAAAAGAC
TCTTCAAGAAAATGAAGAAGAGGAGATTGGGAATTTAGAACTTGCCTGGGATATGCTAGATTTA
GCCAAGATTATTTTTAAGAGGCAAGAAACAAAAGAAGCCCAGCTTTATGCTGCACAAGCCCATC
TTAAACTTGGAGAAGTTAGTGTTGAATCTGAGAATTATATCCAAGCTGTGGAGGAGTTTCAGGC
TTGCCTAAGCCTGCAAGAGCAGTATTTGGAAGCTCACGATCGTCTCCTTGCGGAGACTCACTAC
CAGTTGGGTTTGGCCTATGGTTACAACTCTCAGTATGATGAGGCTGTAGCACAGTTTGGCAAAT
CTATTGACGTCATTGAGAAGAGAATGGCTGTACTACTTGAGCAGATGAAGGAGGCTGAAGGATC
ATTTACTGAATACGAGAAAGAAATCGAGGAGCTGAAAGAACTGCTCCCCGAGATTCGGGAGAAG
ATAGAGGATGCAAAGGAGTCTCAGCGGAGTGGGAATGTAGCTGAGCTGGCTCTGAAGGCCACTC
TGGTCGAGAGCTCTACTTCAGGTTTCACTCCTAGTGGAGCTGGTGCCTCGGTATCCATGATTGC
CAGTAGAAAACCAACAGATGGCGCTTCCTCATCAAACTGTGTCACTGATATTTCTCATCTTGTC
AGAAAGAAGAGGAAACCAGAGGAAGAGAGTCCCCGGAAAGATGATGCAAAGAAAGCTAAACCAG
AACCAGAGGTGAATGGAGGCAGTGGAGATGCTGTCTCCAGTGGAAATGAAGTTTCAGAAAACAT
GGAGGCAGAGGCTGAGAATCAGGCTGAGAGCCAGACAACAGCAGAAGGGACAGTGGACTCTGCA
GCTACAGTTAAAAGCACTGCATGTTAAGAGGCGAGCAGAACCTTCCTCCTGAGGGAAAGTGGTT
TTGTACATAATGTATTTTTTCACTTTTGGGGATTCTTTTTGTATAACTCCAATAAAGATTGTAG
GCAACAGCTGAGACTTTGATGGCTTTTTTCTTAAAAATATTGGTGGATTGTTTTGGGGCACTCT
ATATTGTGTATACATGCCTTGTGTTTTGCTACTGCACAACCCACTTCCTGTCTAATGTGGAGGT
GATCAAGTTGATCAAGGCCCTTCATCTACTGGTGCTATGTTTCTATTTCCAAATATTTGGCTGA
ATTCAAATACCTTGTAAGCTTTCCATGGTGCTGTCCCTGGATGGGGTCTGCTAAACAAGAACTG
GTAGAAATCAGTTTGGTGCTGAAAATGGAGCATGGAATATGACCCAGGTCTTGGTTTGTGCCTA
CCTTCTGTTCACCTGGTTTCCATTTAAGGCCATAATATCCTGCCCTGGCAAAACTGGCAGAAAC
ATGGGAAATGATTCCTGAGGAAAACTGTTGTTAGATACTCCGTAGGATCACACTGTAGTGGGAG
ACAAGTAGAAGACTATGATTGAGAAGTCTGTTACGTTATTTTCTGTATAGAAAGATTACAATAT
GTCAATAAGTGGAATTGTTATATTGTGCAGTTTTGTCTATAAAAATAAATATGCTAATTTTAA

hide sequence

RefSeq Acc Id:

XM_006238647 ⟹ XP_006238709

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	130,057,363 - 130,082,530 (-)	NCBI
Rnor_6.0	5	135,446,485 - 135,471,654 (-)	NCBI
Rnor_5.0	5	139,242,666 - 139,268,285 (-)	NCBI

Sequence:

show sequence

GAGGGCCTCAACCGCGCGGGGTCTCCAATCTGCCATTTTCTCTACCTGAGTAAGTCATCGTTGT
CTGGAATTCTCTCGTTTTCTTCGCAGGCAGTATACTGCCCACTGGCCCACCACCTCAGGGGAAC
GATGGCCACAGAGTCTACAGCCACTGCTGCCATCGCCGCGGAACTGGTTTCCGCTGACAAAGTT
GAAGATGCTCCTGCTCCTTCTACCTCTGCAGATAAAATGGAGAGTCTGGATGTGGATAGTGAAG
CTAAGAAACTACTGGGATTAGGACAGAAACATCTGGTGATGGGTGACATTCCAGCAGCTGTTAA
TGCATTCCAAGAAGCAGCTAGTCTTTTAGGTAAGAAGTATGGAGAAACGGCTAATGAGTGTGGA
GAAGCCTTCTTTTTTTATGGGAAGTCACTTCTGGAGTTGGCCAGAATGGAGAATGGAGTGTTGG
GAAATGCCTTAGAAGGAGTGCATGTAGAAGAGGAAGAAGGAGAAAAAACAGAAGATGAATCTTT
GGTAGAAAATAATGATAATGTAGATGAAACTGAAGGCTCAGAGGAAGAAGACAAAGAAAATGAC
AAGGCTGAAGAAACAACAAATGAATCAGTTCTTGAAAAAAAGACTCTTCAAGAAAATGAAGAAG
AGGAGATTGGGAATTTAGAACTTGCCTGGGATATGCTAGATTTAGCCAAGATTATTTTTAAGAG
GCAAGAAACAAAAGAAGCCCAGCTTTATGCTGCACAAGCCCATCTTAAACTTGGAGAAGTTAGT
GTTGAATCTGAGAATTATATCCAAGCTGTGGAGGAGTTTCAGGCTTGCCTAAGCCTGCAAGAGC
AGTATTTGGAAGCTCACGATCGTCTCCTTGCGGAGACTCACTACCAGTTGGGTTTGGCCTATGG
TTACAACTCTCAGTATGATGAGGCTGTAGCACAGTTTGGCAAATCTATTGACGTCATTGAGAAG
AGAATGGCTGTACTACTTGAGCAGATGAAGGAGGCTGAAGGATCATTTACTGAATACGAGAAAG
AAATCGAGGAGCTGAAAGAACTGCTCCCCGAGATTCGGGAGAAGATAGAGGATGCAAAGGAGTC
TCAGCGGAGTGGGAATGTAGCTGAGCTGGCTCTGAAGGCCACTCTGGTCGAGAGCTCTACTTCA
GGTTTCACTCCTAGTGGAGCTGGTGCCTCGGTATCCATGATTGCCAGTAGAAAACCAACAGATG
GCGCTTCCTCATCAAACTGTGTCACTGATATTTCTCATCTTGTCAGAAAGAAGAGGAAACCAGA
GGAAGAGAGTCCCCGGAAAGATGATGCAAAGAAAGCTAAACCAGAACCAGAGGTGAATGGAGGC
AGTGGAGATGCTGTCTCCAGTGGAAATGAAGTTTCAGAAAACATGGAGGCAGAGGCTGAGAATC
AGGCTGAGAGCCAGACAACAGCAGAAGGGACAGTGGACTCTGCAGCTACAGTTAAAAGCACTGC
ATGTTAAGAGGCGAGCAGAACCTTCCTCCTGAGGGAAAGTGGTTTTGTACATAATGTATTTTTT
CACTTTTGGGGATTCTTTTTGTATAACTCCAATAAAGATTGTAGGCAACAGCTGAGACTTTGAT
GGCTTTTTTCTTAAAAATATTGGTGGATTGTTTTGGGGCACTCTATATTGTGTATACATGCCTT
GTGTTTTGCTACTGCACAACCCACTTCCTGTCTAATGTGGAGGTGATCAAGTTGATCAAGGCCC
TTCATCTACTGGTGCTATGTTTCTATTTCCAAATATTTGGCTGAATTCAAATACCTTGTAAGCT
TTCCATGGTGCTGTCCCTGGATGGGGTCTGCTAAACAAGAACTGGTAGAAATCAGTTTGGTGCT
GAAAATGGAGCATGGAATATGACCCAGGTCTTGGTTTGTGCCTACCTTCTGTTCACCTGGTTTC
CATTTAAGGCCATAATATCCTGCCCTGGCAAAACTGGCAGAAACATGGGAAATGATTCCTGAGG
AAAACTGTTGTTAGATACTCCGTAGGATCACACTGTAGTGGGAGACAAGTAGAAGACTATGATT
GAGAAGTCTGTTACGTTATTTTCTGTATAGAAAGATTACAATATGTCAATAAGTGGAATTGTTA
TATTGTGCAGTTTTGTCTATAAAAATAAATATGCTAATTTTAA

hide sequence

RefSeq Acc Id:

XM_008763993 ⟹ XP_008762215

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	130,057,363 - 130,082,893 (-)	NCBI
Rnor_6.0	5	135,446,485 - 135,472,018 (-)	NCBI

Sequence:

show sequence

CCGTCAGAAAGAAACCCTCGGGACTACTTTTTCCACAGTCGCAGAGACTCACTGGTTCCACTTA
ATTGTGGAATCTCTAGGCTGGCTCCCATTCAGAAGTAGTACCGAGATTTTGGTGCTTCTAACAC
GACTAGCCACAGAAGCAGGAAGCAGTATACTGCCCACTGGCCCACCACCTCAGGGGAACGATGG
CCACAGAGTCTACAGCCACTGCTGCCATCGCCGCGGAACTGGTTTCCGCTGACAAAGTTGAAGA
TGCTCCTGCTCCTTCTACCTCTGCAGATAAAATGGAGAGTCTGGATGTGGATAGTGAAGCTAAG
AAACTACTGGGATTAGGACAGAAACATCTGGTGATGGGTGACATTCCAGCAGCTGTTAATGCAT
TCCAAGAAGCAGCTAGTCTTTTAGGTAAGAAGTATGGAGAAACGGCTAATGAGTGTGGAGAAGC
CTTCTTTTTTTATGGGAAGTCACTTCTGGAGTTGGCCAGAATGGAGAATGGAGTGTTGGGAAAT
GCCTTAGAAGGAGTGCATGTAGAAGAGGAAGAAGGAGAAAAAACAGAAGATGAATCTTTGGTAG
AAAATAATGATAATGTAGATGAGGAAGCAAGGGAAGAGTTGAGAGAACAGGTTTATGACGCCAT
GGGAGAAAAAGAAGCCAAAAAAGCAGAAGGCCAGTCTCTGACAAAGCCTGAAACTGATAAAGAA
CAGGAAAGTGAAGTGGAGAAGGGTGGAAGAGAAGATATGGATATAAGTGAGCCTGCAGAGAAGC
TCCAGGAAAAAGTTGAATCGACTTCAAAGCAGTTAACTGAATCCTCTGAAGAGGCAAAAGAAGC
AGCAATACCAGGACTGAATGAAGATGAGGTCACTTCTGGGAAGACAGAACAGGAATCATTGTGT
ACTGAGGAAGGAAAATCCATTTCTGGAGTTTATGTTCAAAATAAAGAATTCAGAGAAGCAGTGC
CTCAGGAGGAGGGAGAGGAAATGATAAGCTTAGAAAAAAAGCCAAAAGAAACTTCAGAAGATCA
GACTATTGGGGCTCCAGAAAAGCAGGACACTTTAATGAAGGTGGTAGAAATAGAAGCTGAAATA
GACTCTGAAGTCAAGTCAGTGGATGTGGGTGGGGAGGAGCCGAAGGATCAGGGAGCTATCTCTG
AGAGTGAACTAGGAAAGGCTGTTCTTATGCAACTCTCAGGGCAAGATGTTGAAGTATCACCAGT
AGTGGCTGCAGAGGCTGGATCAGAAGTCTCTGAGAAGCCAGGGCAGGAGATTACAGTTCTTCCC
AACAATGGTCCAGTTGTTGGACAATCATCTGCAGGAGATCAAACTCCTAGTGAACCACAGAATT
CTGCAGAAAGACTGTCAGAAACTAAAGATGGCGCAAGTGTAGAGGAGGTCAAGGCAGAGCTGGT
TCCTGAACAGGAGGAAGCTATGCCTCCTGTAGAAGAGTCTGAGGCAGCTGGAGATGGGGTTGAG
ACCAAGGTAGCCCAGAGGGCCACGGAGAAAGCACCTGAAGACAAATTTAAGATAGCTGCTAATG
AAGAGACACAAGAGAGAGACGAACAGATGAAAGAGGGTGAAGAAACTGAAGGCTCAGAGGAAGA
AGACAAAGAAAATGACAAGGCTGAAGAAACAACAAATGAATCAGTTCTTGAAAAAAAGACTCTT
CAAGAAAATGAAGAAGAGGAGATTGGGAATTTAGAACTTGCCTGGGATATGCTAGATTTAGCCA
AGATTATTTTTAAGAGGCAAGAAACAAAAGAAGCCCAGCTTTATGCTGCACAAGCCCATCTTAA
ACTTGGAGAAGTTAGTGTTGAATCTGAGAATTATATCCAAGCTGTGGAGGAGTTTCAGGCTTGC
CTAAGCCTGCAAGAGCAGTATTTGGAAGCTCACGATCGTCTCCTTGCGGAGACTCACTACCAGT
TGGGTTTGGCCTATGGTTACAACTCTCAGTATGATGAGGCTGTAGCACAGTTTGGCAAATCTAT
TGACGTCATTGAGAAGAGAATGGCTGTACTACTTGAGCAGATGAAGGAGGCTGAAGGATCATTT
ACTGAATACGAGAAAGAAATCGAGGAGCTGAAAGAACTGCTCCCCGAGATTCGGGAGAAGATAG
AGGATGCAAAGGAGTCTCAGCGGAGTGGGAATGTAGCTGAGCTGGCTCTGAAGGCCACTCTGGT
CGAGAGCTCTACTTCAGGTTTCACTCCTAGTGGAGCTGGTGCCTCGGTATCCATGATTGCCAGT
AGAAAACCAACAGATGGCGCTTCCTCATCAAACTGTGTCACTGATATTTCTCATCTTGTCAGAA
AGAAGAGGAAACCAGAGGAAGAGAGTCCCCGGAAAGATGATGCAAAGAAAGCTAAACCAGAACC
AGAGGTGAATGGAGGCAGTGGAGATGCTGTCTCCAGTGGAAATGAAGTTTCAGAAAACATGGAG
GCAGAGGCTGAGAATCAGGCTGAGAGCCAGACAACAGCAGAAGGGACAGTGGACTCTGCAGCTA
CAGTTAAAAGCACTGCATGTTAAGAGGCGAGCAGAACCTTCCTCCTGAGGGAAAGTGGTTTTGT
ACATAATGTATTTTTTCACTTTTGGGGATTCTTTTTGTATAACTCCAATAAAGATTGTAGGCAA
CAGCTGAGACTTTGATGGCTTTTTTCTTAAAAATATTGGTGGATTGTTTTGGGGCACTCTATAT
TGTGTATACATGCCTTGTGTTTTGCTACTGCACAACCCACTTCCTGTCTAATGTGGAGGTGATC
AAGTTGATCAAGGCCCTTCATCTACTGGTGCTATGTTTCTATTTCCAAATATTTGGCTGAATTC
AAATACCTTGTAAGCTTTCCATGGTGCTGTCCCTGGATGGGGTCTGCTAAACAAGAACTGGTAG
AAATCAGTTTGGTGCTGAAAATGGAGCATGGAATATGACCCAGGTCTTGGTTTGTGCCTACCTT
CTGTTCACCTGGTTTCCATTTAAGGCCATAATATCCTGCCCTGGCAAAACTGGCAGAAACATGG
GAAATGATTCCTGAGGAAAACTGTTGTTAGATACTCCGTAGGATCACACTGTAGTGGGAGACAA
GTAGAAGACTATGATTGAGAAGTCTGTTACGTTATTTTCTGTATAGAAAGATTACAATATGTCA
ATAAGTGGAATTGTTATATTGTGCAGTTTTGTCTATAAAAATAAATATGCTAATTTTAA

hide sequence

RefSeq Acc Id:

XM_017593276 ⟹ XP_017448765

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	130,057,363 - 130,082,570 (-)	NCBI
Rnor_6.0	5	135,446,485 - 135,471,709 (-)	NCBI

Sequence:

show sequence

CACGAGGGGGAGGATCCGGAAGTGGATGGGCGGGGCAAGGGGCTCTGGTATATAAGAGGGCCTC
AACCGCGCGGGGTCTCCAATCTGCCATTTTCTCTACCTGAAGTTGAAGATGCTCCTGCTCCTTC
TACCTCTGCAGATAAAATGGAGAGTCTGGATGTGGATAGTGAAGCTAAGAAACTACTGGGATTA
GGACAGAAACATCTGGTGATGGGTGACATTCCAGCAGCTGTTAATGCATTCCAAGAAGCAGCTA
GTCTTTTAGGTAAGAAGTATGGAGAAACGGCTAATGAGTGTGGAGAAGCCTTCTTTTTTTATGG
GAAGTCACTTCTGGAGTTGGCCAGAATGGAGAATGGAGTGTTGGGAAATGCCTTAGAAGGAGTG
CATGTAGAAGAGGAAGAAGGAGAAAAAACAGAAGATGAATCTTTGGTAGAAAATAATGATAATG
TAGATGAGGAAGCAAGGGAAGAGTTGAGAGAACAGGTTTATGACGCCATGGGAGAAAAAGAAGC
CAAAAAAGCAGAAGGCCAGTCTCTGACAAAGCCTGAAACTGATAAAGAACAGGAAAGTGAAGTG
GAGAAGGGTGGAAGAGAAGATATGGATATAAGTGAGCCTGCAGAGAAGCTCCAGGAAAAAGTTG
AATCGACTTCAAAGCAGTTAACTGAATCCTCTGAAGAGGCAAAAGAAGCAGCAATACCAGGACT
GAATGAAGATGAGGTCACTTCTGGGAAGACAGAACAGGAATCATTGTGTACTGAGGAAGGAAAA
TCCATTTCTGGAGTTTATGTTCAAAATAAAGAATTCAGAGAAGCAGTGCCTCAGGAGGAGGGAG
AGGAAATGATAAGCTTAGAAAAAAAGCCAAAAGAAACTTCAGAAGATCAGACTATTGGGGCTCC
AGAAAAGCAGGACACTTTAATGAAGGTGGTAGAAATAGAAGCTGAAATAGACTCTGAAGTCAAG
TCAGTGGATGTGGGTGGGGAGGAGCCGAAGGATCAGGGAGCTATCTCTGAGAGTGAACTAGGAA
AGGCTGTTCTTATGCAACTCTCAGGGCAAGATGTTGAAGTATCACCAGTAGTGGCTGCAGAGGC
TGGATCAGAAGTCTCTGAGAAGCCAGGGCAGGAGATTACAGTTCTTCCCAACAATGGTCCAGTT
GTTGGACAATCATCTGCAGGAGATCAAACTCCTAGTGAACCACAGAATTCTGCAGAAAGACTGT
CAGAAACTAAAGATGGCGCAAGTGTAGAGGAGGTCAAGGCAGAGCTGGTTCCTGAACAGGAGGA
AGCTATGCCTCCTGTAGAAGAGTCTGAGGCAGCTGGAGATGGGGTTGAGACCAAGGTAGCCCAG
AGGGCCACGGAGAAAGCACCTGAAGACAAATTTAAGATAGCTGCTAATGAAGAGACACAAGAGA
GAGACGAACAGATGAAAGAGGGTGAAGAAACTGAAGGCTCAGAGGAAGAAGACAAAGAAAATGA
CAAGGCTGAAGAAACAACAAATGAATCAGTTCTTGAAAAAAAGACTCTTCAAGAAAATGAAGAA
GAGGAGATTGGGAATTTAGAACTTGCCTGGGATATGCTAGATTTAGCCAAGATTATTTTTAAGA
GGCAAGAAACAAAAGAAGCCCAGCTTTATGCTGCACAAGCCCATCTTAAACTTGGAGAAGTTAG
TGTTGAATCTGAGAATTATATCCAAGCTGTGGAGGAGTTTCAGGCTTGCCTAAGCCTGCAAGAG
CAGTATTTGGAAGCTCACGATCGTCTCCTTGCGGAGACTCACTACCAGTTGGGTTTGGCCTATG
GTTACAACTCTCAGTATGATGAGGCTGTAGCACAGTTTGGCAAATCTATTGACGTCATTGAGAA
GAGAATGGCTGTACTACTTGAGCAGATGAAGGAGGCTGAAGGATCATTTACTGAATACGAGAAA
GAAATCGAGGAGCTGAAAGAACTGCTCCCCGAGATTCGGGAGAAGATAGAGGATGCAAAGGAGT
CTCAGCGGAGTGGGAATGTAGCTGAGCTGGCTCTGAAGGCCACTCTGGTCGAGAGCTCTACTTC
AGGTTTCACTCCTAGTGGAGCTGGTGCCTCGGTATCCATGATTGCCAGTAGAAAACCAACAGAT
GGCGCTTCCTCATCAAACTGTGTCACTGATATTTCTCATCTTGTCAGAAAGAAGAGGAAACCAG
AGGAAGAGAGTCCCCGGAAAGATGATGCAAAGAAAGCTAAACCAGAACCAGAGGTGAATGGAGG
CAGTGGAGATGCTGTCTCCAGTGGAAATGAAGTTTCAGAAAACATGGAGGCAGAGGCTGAGAAT
CAGGCTGAGAGCCAGACAACAGCAGAAGGGACAGTGGACTCTGCAGCTACAGTTAAAAGCACTG
CATGTTAAGAGGCGAGCAGAACCTTCCTCCTGAGGGAAAGTGGTTTTGTACATAATGTATTTTT
TCACTTTTGGGGATTCTTTTTGTATAACTCCAATAAAGATTGTAGGCAACAGCTGAGACTTTGA
TGGCTTTTTTCTTAAAAATATTGGTGGATTGTTTTGGGGCACTCTATATTGTGTATACATGCCT
TGTGTTTTGCTACTGCACAACCCACTTCCTGTCTAATGTGGAGGTGATCAAGTTGATCAAGGCC
CTTCATCTACTGGTGCTATGTTTCTATTTCCAAATATTTGGCTGAATTCAAATACCTTGTAAGC
TTTCCATGGTGCTGTCCCTGGATGGGGTCTGCTAAACAAGAACTGGTAGAAATCAGTTTGGTGC
TGAAAATGGAGCATGGAATATGACCCAGGTCTTGGTTTGTGCCTACCTTCTGTTCACCTGGTTT
CCATTTAAGGCCATAATATCCTGCCCTGGCAAAACTGGCAGAAACATGGGAAATGATTCCTGAG
GAAAACTGTTGTTAGATACTCCGTAGGATCACACTGTAGTGGGAGACAAGTAGAAGACTATGAT
TGAGAAGTCTGTTACGTTATTTTCTGTATAGAAAGATTACAATATGTCAATAAGTGGAATTGTT
ATATTGTGCAGTTTTGTCTATAAAAATAAATATGCTAATTTTAA

hide sequence

RefSeq Acc Id:

XM_039109600 ⟹ XP_038965528

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	130,057,363 - 130,082,771 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001005543	(Get FASTA)	NCBI Sequence Viewer
	XP_006238708	(Get FASTA)	NCBI Sequence Viewer
	XP_006238709	(Get FASTA)	NCBI Sequence Viewer
	XP_008762215	(Get FASTA)	NCBI Sequence Viewer
	XP_017448765	(Get FASTA)	NCBI Sequence Viewer
	XP_038965528	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81913	(Get FASTA)	NCBI Sequence Viewer
	EDL90267	(Get FASTA)	NCBI Sequence Viewer
	Q66HD3	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001005543 ⟸ NM_001005543

- UniProtKB:

Q66HD3 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MATESTATAAIAAELVSADKVEDAPAPSTSADKMESLDVDSEAKKLLGLGQKHLVMGDIPAAVN
AFQEAASLLGKKYGETANECGEAFFFYGKSLLELARMENGVLGNALEGVHVEEEEGEKTEDESL
VENNDNVDEEAREELREQVYDAMGEKEAKKAEGQSLTKPETDKEQESEVEKGGREDMDISEPAE
KLQEKVESTSKQLTESSEEAKEAAIPGLNEDEVTSGKTEQESLCTEEGKSISGVYVQNKEFREA
VPQEEGEEMISLEKKPKETSEDQTIGAPEKQDTLMKVVEIEAEIDSEVKSVDVGGEEPKDQGAI
SESELGKAVLMQLSGQDVEVSPVVAAEAGSEVSEKPGQEITVLPNNGPVVGQSSAGDQTPSEPQ
NSAERLSETKDGASVEEVKAELVPEQEEAMPPVEESEAAGDGVETKVAQRATEKAPEDKFKIAA
NEETQERDEQMKEGEETEGSEEEDKENDKAEETTNESVLEKKTLQENEEEEIGNLELAWDMLDL
AKIIFKRQETKEAQLYAAQAHLKLGEVSVESENYIQAVEEFQACLSLQEQYLEAHDRLLAETHY
QLGLAYGYNSQYDEAVAQFGKSIDVIEKRMAVLLEQMKEAEGSFTEYEKEIEELKELLPEIREK
IEDAKESQRSGNVAELALKATLVESSTSGFTPSGAGASVSMIASRKPTDGASSSNCVTDISHLV
RKKRKPEEESPRKDDAKKAKPEPEVNGGSGDAVSSGNEVSENMEAEAENQAESQTTAEGTVDSA
ATVKSTAC

hide sequence

RefSeq Acc Id:	XP_006238708 ⟸ XM_006238646
- Peptide Label:	isoform X1
- UniProtKB:	Q66HD3 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MATESTATAAIAAELVSADKVEDAPAPSTSADKMESLDVDSEAKKLLGLGQKHLVMGDIPAAVN AFQEAASLLGKKYGETANECGEAFFFYGKSLLELARMENGVLGNALEGVHVEEEEGEKTEDESL VENNDNVDEEAREELREQVYDAMGEKEAKKAEGQSLTKPETDKEQESEVEKGGREDMDISEPAE KLQEKVESTSKQLTESSEEAKEAAIPGLNEDEVTSGKTEQESLCTEEGKSISGVYVQNKEFREA VPQEEGEEMISLEKKPKETSEDQTIGAPEKQDTLMKVVEIEAEIDSEVKSVDVGGEEPKDQGAI SESELGKAVLMQLSGQDVEVSPVVAAEAGSEVSEKPGQEITVLPNNGPVVGQSSAGDQTPSEPQ NSAERLSETKDGASVEEVKAELVPEQEEAMPPVEESEAAGDGVETKVAQRATEKAPEDKFKIAA NEETQERDEQMKEGEETEGSEEEDKENDKAEETTNESVLEKKTLQENEEEEIGNLELAWDMLDL AKIIFKRQETKEAQLYAAQAHLKLGEVSVESENYIQAVEEFQACLSLQEQYLEAHDRLLAETHY QLGLAYGYNSQYDEAVAQFGKSIDVIEKRMAVLLEQMKEAEGSFTEYEKEIEELKELLPEIREK IEDAKESQRSGNVAELALKATLVESSTSGFTPSGAGASVSMIASRKPTDGASSSNCVTDISHLV RKKRKPEEESPRKDDAKKAKPEPEVNGGSGDAVSSGNEVSENMEAEAENQAESQTTAEGTVDSA ATVKSTAC hide sequence

RefSeq Acc Id:	XP_006238709 ⟸ XM_006238647
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AFA6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATESTATAAIAAELVSADKVEDAPAPSTSADKMESLDVDSEAKKLLGLGQKHLVMGDIPAAVN AFQEAASLLGKKYGETANECGEAFFFYGKSLLELARMENGVLGNALEGVHVEEEEGEKTEDESL VENNDNVDETEGSEEEDKENDKAEETTNESVLEKKTLQENEEEEIGNLELAWDMLDLAKIIFKR QETKEAQLYAAQAHLKLGEVSVESENYIQAVEEFQACLSLQEQYLEAHDRLLAETHYQLGLAYG YNSQYDEAVAQFGKSIDVIEKRMAVLLEQMKEAEGSFTEYEKEIEELKELLPEIREKIEDAKES QRSGNVAELALKATLVESSTSGFTPSGAGASVSMIASRKPTDGASSSNCVTDISHLVRKKRKPE EESPRKDDAKKAKPEPEVNGGSGDAVSSGNEVSENMEAEAENQAESQTTAEGTVDSAATVKSTA C hide sequence

RefSeq Acc Id:	XP_008762215 ⟸ XM_008763993
- Peptide Label:	isoform X1
- UniProtKB:	Q66HD3 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MATESTATAAIAAELVSADKVEDAPAPSTSADKMESLDVDSEAKKLLGLGQKHLVMGDIPAAVN AFQEAASLLGKKYGETANECGEAFFFYGKSLLELARMENGVLGNALEGVHVEEEEGEKTEDESL VENNDNVDEEAREELREQVYDAMGEKEAKKAEGQSLTKPETDKEQESEVEKGGREDMDISEPAE KLQEKVESTSKQLTESSEEAKEAAIPGLNEDEVTSGKTEQESLCTEEGKSISGVYVQNKEFREA VPQEEGEEMISLEKKPKETSEDQTIGAPEKQDTLMKVVEIEAEIDSEVKSVDVGGEEPKDQGAI SESELGKAVLMQLSGQDVEVSPVVAAEAGSEVSEKPGQEITVLPNNGPVVGQSSAGDQTPSEPQ NSAERLSETKDGASVEEVKAELVPEQEEAMPPVEESEAAGDGVETKVAQRATEKAPEDKFKIAA NEETQERDEQMKEGEETEGSEEEDKENDKAEETTNESVLEKKTLQENEEEEIGNLELAWDMLDL AKIIFKRQETKEAQLYAAQAHLKLGEVSVESENYIQAVEEFQACLSLQEQYLEAHDRLLAETHY QLGLAYGYNSQYDEAVAQFGKSIDVIEKRMAVLLEQMKEAEGSFTEYEKEIEELKELLPEIREK IEDAKESQRSGNVAELALKATLVESSTSGFTPSGAGASVSMIASRKPTDGASSSNCVTDISHLV RKKRKPEEESPRKDDAKKAKPEPEVNGGSGDAVSSGNEVSENMEAEAENQAESQTTAEGTVDSA ATVKSTAC hide sequence

RefSeq Acc Id:

XP_017448765 ⟸ XM_017593276

- Peptide Label:

isoform X2

- Sequence:

show sequence

MESLDVDSEAKKLLGLGQKHLVMGDIPAAVNAFQEAASLLGKKYGETANECGEAFFFYGKSLLE
LARMENGVLGNALEGVHVEEEEGEKTEDESLVENNDNVDEEAREELREQVYDAMGEKEAKKAEG
QSLTKPETDKEQESEVEKGGREDMDISEPAEKLQEKVESTSKQLTESSEEAKEAAIPGLNEDEV
TSGKTEQESLCTEEGKSISGVYVQNKEFREAVPQEEGEEMISLEKKPKETSEDQTIGAPEKQDT
LMKVVEIEAEIDSEVKSVDVGGEEPKDQGAISESELGKAVLMQLSGQDVEVSPVVAAEAGSEVS
EKPGQEITVLPNNGPVVGQSSAGDQTPSEPQNSAERLSETKDGASVEEVKAELVPEQEEAMPPV
EESEAAGDGVETKVAQRATEKAPEDKFKIAANEETQERDEQMKEGEETEGSEEEDKENDKAEET
TNESVLEKKTLQENEEEEIGNLELAWDMLDLAKIIFKRQETKEAQLYAAQAHLKLGEVSVESEN
YIQAVEEFQACLSLQEQYLEAHDRLLAETHYQLGLAYGYNSQYDEAVAQFGKSIDVIEKRMAVL
LEQMKEAEGSFTEYEKEIEELKELLPEIREKIEDAKESQRSGNVAELALKATLVESSTSGFTPS
GAGASVSMIASRKPTDGASSSNCVTDISHLVRKKRKPEEESPRKDDAKKAKPEPEVNGGSGDAV
SSGNEVSENMEAEAENQAESQTTAEGTVDSAATVKSTAC

hide sequence

RefSeq Acc Id:

ENSRNOP00000022170 ⟸ ENSRNOT00000022170

RefSeq Acc Id:	XP_038965528 ⟸ XM_039109600
- Peptide Label:	isoform X1
- UniProtKB:	Q66HD3 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:

ENSRNOP00000079908 ⟸ ENSRNOT00000105479

RefSeq Acc Id:

ENSRNOP00000091359 ⟸ ENSRNOT00000119622

RefSeq Acc Id:

ENSRNOP00000078719 ⟸ ENSRNOT00000099538

Protein Domains

SHNi-TPR

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q66HD3-F1-model_v2	AlphaFold	Q66HD3	1-776	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693936

Promoter ID:

EPDNEW_R4461

Type:

initiation region

Name:

Nasp_1

Description:

nuclear autoantigenic sperm protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	135,472,064 - 135,472,124	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359609	AgrOrtholog
BioCyc Gene	G2FUF-40246	BioCyc
Ensembl Genes	ENSRNOG00000016454	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000022170	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000078719	ENTREZGENE
	ENSRNOP00000078719.1	UniProtKB/TrEMBL
	ENSRNOP00000079908.1	UniProtKB/TrEMBL
	ENSRNOP00000091359	ENTREZGENE
	ENSRNOP00000091359.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000022170	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000099538	ENTREZGENE
	ENSRNOT00000099538.1	UniProtKB/TrEMBL
	ENSRNOT00000105479.1	UniProtKB/TrEMBL
	ENSRNOT00000119622	ENTREZGENE
	ENSRNOT00000119622.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7112076	IMAGE-MGC_LOAD
InterPro	Tetratricopeptide_SHNi-TPR_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TPR-like_helical_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TPR_repeat	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:298441	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93869	IMAGE-MGC_LOAD
NCBI Gene	298441	ENTREZGENE
Pfam	SHNi-TPR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TPR_8	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Nasp	PhenoGen
PROSITE	TPR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TPR_REGION	UniProtKB/Swiss-Prot
SMART	TPR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF48452	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZLB9_RAT	UniProtKB/TrEMBL
	A0A8I5ZP00_RAT	UniProtKB/TrEMBL
	A0A8I6AFA6	ENTREZGENE, UniProtKB/TrEMBL
	NASP_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-17	Nasp	nuclear autoantigenic sperm protein	Nasp	nuclear autoantigenic sperm protein (histone-binding)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Nasp	nuclear autoantigenic sperm protein (histone-binding)		nuclear autoantigenic sperm protein	Name updated	1299863	APPROVED
2005-07-29	Nasp	nuclear autoantigenic sperm protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

RGD Manual Annotations