Slc34a2 (solute carrier family 34 member 2) - Rat Genome Database

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Gene: Slc34a2 (solute carrier family 34 member 2) Rattus norvegicus
Analyze
Symbol: Slc34a2
Name: solute carrier family 34 member 2
RGD ID: 620889
Description: Enables protein domain specific binding activity. Involved in several processes, including response to estradiol; response to fructose; and sodium-dependent phosphate transport. Located in apical plasma membrane; brush border membrane; and microvillus membrane. Human ortholog(s) of this gene implicated in pulmonary alveolar microlithiasis. Orthologous to human SLC34A2 (solute carrier family 34 member 2); PARTICIPATES IN phosphate transport pathway; INTERACTS WITH 1,3-dinitrobenzene; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: na(+)-dependent phosphate cotransporter 2B; na(+)/Pi cotransporter 2B; naPi-2b; rNaPi IIb; sodium-dependent phosphate transport protein 2B; sodium-phosphate transport protein 2B; sodium/phosphate cotransporter 2B; solute carrier family 34 (sodium phosphate), member 2; solute carrier family 34 (type II sodium/phosphate contransporter), member 2; solute carrier family 34 (type II sodium/phosphate cotransporter), member 2; type IIb sodium-phosphate transporter
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21457,910,931 - 57,930,236 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1457,910,480 - 57,930,436 (-)Ensembl
Rnor_6.01460,257,211 - 60,276,516 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1460,256,712 - 60,276,794 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01460,375,980 - 60,395,841 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41462,660,006 - 62,679,311 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11462,661,945 - 62,674,066 (-)NCBI
Celera1457,011,613 - 57,030,915 (-)NCBICelera
Cytogenetic Map14q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (EXP)
all-trans-retinoic acid  (EXP,ISO)
ammonium chloride  (EXP)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP,ISO)
bromobenzene  (EXP)
buspirone  (EXP)
calcitriol  (ISO)
chlorohydrocarbon  (EXP)
clofibrate  (EXP)
cyclosporin A  (EXP)
dextran sulfate  (ISO)
dieldrin  (EXP)
dimethylarsinic acid  (ISO)
dioxygen  (ISO)
endosulfan  (EXP)
fenofibrate  (EXP)
flutamide  (EXP)
fonofos  (ISO)
formaldehyde  (ISO)
fructose  (EXP)
fulvestrant  (ISO)
furan  (EXP)
heptachlor  (EXP)
indole-3-methanol  (EXP)
iron atom  (EXP)
iron(0)  (EXP)
leflunomide  (EXP)
methotrexate  (ISO)
methylarsonic acid  (ISO)
methylmercury chloride  (EXP)
mirex  (EXP)
Muraglitazar  (EXP)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nevirapine  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
nimesulide  (EXP)
nitrofen  (EXP)
oxycodone  (EXP)
paracetamol  (EXP)
paraquat  (EXP)
parathion  (ISO)
perfluorooctanoic acid  (EXP)
phenformin  (EXP)
phenobarbital  (ISO)
pirinixic acid  (EXP,ISO)
pravastatin  (EXP,ISO)
propiconazole  (ISO)
rotenone  (EXP)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
tacrolimus hydrate  (EXP)
tamoxifen  (ISO)
terbufos  (ISO)
Tesaglitazar  (EXP)
testosterone  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
tributylstannane  (ISO)
trichloroethene  (ISO)
triclosan  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
troglitazone  (EXP)
trovafloxacin  (EXP)
tungstate  (EXP)
valdecoxib  (EXP)
valproic acid  (ISO)
vinclozolin  (EXP)
zaragozic acid A  (EXP,ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:9826740   PMID:10329428   PMID:10610722   PMID:11706048   PMID:12121891   PMID:12488042   PMID:12773415   PMID:15489334   PMID:15970207   PMID:17310099   PMID:17574207   PMID:19190083  
PMID:19233126   PMID:19806400   PMID:22235299   PMID:28179233   PMID:33846411  


Genomics

Comparative Map Data
Slc34a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21457,910,931 - 57,930,236 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1457,910,480 - 57,930,436 (-)Ensembl
Rnor_6.01460,257,211 - 60,276,516 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1460,256,712 - 60,276,794 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01460,375,980 - 60,395,841 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41462,660,006 - 62,679,311 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11462,661,945 - 62,674,066 (-)NCBI
Celera1457,011,613 - 57,030,915 (-)NCBICelera
Cytogenetic Map14q11NCBI
SLC34A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38425,655,851 - 25,678,748 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl425,648,011 - 25,678,748 (+)EnsemblGRCh38hg38GRCh38
GRCh37425,657,473 - 25,680,370 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36425,266,533 - 25,289,468 (+)NCBINCBI36hg18NCBI36
Build 34425,333,741 - 25,354,773NCBI
Celera426,105,505 - 26,128,442 (+)NCBI
Cytogenetic Map4p15.2NCBI
HuRef424,995,885 - 25,018,820 (+)NCBIHuRef
CHM1_1425,657,246 - 25,680,195 (+)NCBICHM1_1
T2T-CHM13v2.0425,637,821 - 25,660,720 (+)NCBI
Slc34a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39553,206,695 - 53,229,006 (+)NCBIGRCm39mm39
GRCm39 Ensembl553,195,423 - 53,229,006 (+)Ensembl
GRCm38553,049,353 - 53,071,664 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl553,038,081 - 53,071,664 (+)EnsemblGRCm38mm10GRCm38
MGSCv37553,440,592 - 53,462,903 (+)NCBIGRCm37mm9NCBIm37
MGSCv36553,337,630 - 53,359,912 (+)NCBImm8
Celera550,429,966 - 50,452,261 (+)NCBICelera
Cytogenetic Map5C1NCBI
cM Map528.92NCBI
Slc34a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544319,452,306 - 19,467,129 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544319,452,373 - 19,467,129 (-)NCBIChiLan1.0ChiLan1.0
SLC34A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1425,336,538 - 25,359,381 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl425,336,538 - 25,359,381 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0420,056,254 - 20,079,012 (+)NCBIMhudiblu_PPA_v0panPan3
SLC34A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1384,686,505 - 84,717,579 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl384,686,425 - 84,742,038 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha387,197,404 - 87,228,556 (-)NCBI
ROS_Cfam_1.0385,655,124 - 85,686,281 (-)NCBI
ROS_Cfam_1.0 Ensembl385,655,645 - 85,714,088 (-)Ensembl
UMICH_Zoey_3.1384,777,180 - 84,808,314 (-)NCBI
UNSW_CanFamBas_1.0384,897,108 - 84,928,226 (-)NCBI
UU_Cfam_GSD_1.0385,280,888 - 85,312,032 (-)NCBI
Slc34a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528550,252,670 - 50,273,639 (-)NCBI
SpeTri2.0NW_0049364773,954,377 - 3,975,259 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC34A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl819,481,198 - 19,509,667 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1819,481,127 - 19,507,903 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2819,819,341 - 19,847,993 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC34A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12724,674,419 - 24,698,844 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2724,674,584 - 24,690,984 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604771,188,809 - 71,212,116 (-)NCBIVero_WHO_p1.0
Slc34a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247556,830,056 - 6,842,910 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247556,829,197 - 6,849,898 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH127919  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21457,910,622 - 57,910,810 (+)MAPPERmRatBN7.2
Rnor_6.01460,256,903 - 60,257,090NCBIRnor6.0
Rnor_5.01460,376,126 - 60,376,313UniSTSRnor5.0
RGSC_v3.41462,659,698 - 62,659,885UniSTSRGSC3.4
Celera1457,011,305 - 57,011,492UniSTS
Cytogenetic Map14q11UniSTS
RH133883  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21457,911,020 - 57,911,235 (+)MAPPERmRatBN7.2
Rnor_6.01460,257,301 - 60,257,515NCBIRnor6.0
Rnor_5.01460,376,524 - 60,376,738UniSTSRnor5.0
RGSC_v3.41462,660,096 - 62,660,310UniSTSRGSC3.4
Celera1457,011,703 - 57,011,917UniSTS
Cytogenetic Map14q11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:181
Count of miRNA genes:138
Interacting mature miRNAs:158
Transcripts:ENSRNOT00000048509
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 1
Medium 18 18 18 17 4 10
Low 25 15 12 15 5 6 1 14 28 5
Below cutoff 3 17 14 8 7 8 3 3 26 2 8 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000048509   ⟹   ENSRNOP00000050889
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1457,910,931 - 57,930,436 (-)Ensembl
Rnor_6.0 Ensembl1460,256,712 - 60,276,794 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111481   ⟹   ENSRNOP00000083766
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1457,910,480 - 57,930,244 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117888   ⟹   ENSRNOP00000096758
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1457,910,931 - 57,930,436 (-)Ensembl
RefSeq Acc Id: NM_053380   ⟹   NP_445832
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21457,910,931 - 57,930,236 (-)NCBI
Rnor_6.01460,257,211 - 60,276,516 (-)NCBI
Rnor_5.01460,375,980 - 60,395,841 (-)NCBI
RGSC_v3.41462,660,006 - 62,679,311 (-)RGD
Celera1457,011,613 - 57,030,915 (-)RGD
Sequence:
Reference Sequences
RefSeq Acc Id: NP_445832   ⟸   NM_053380
- UniProtKB: Q9JJ09 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000050889   ⟸   ENSRNOT00000048509
RefSeq Acc Id: ENSRNOP00000083766   ⟸   ENSRNOT00000111481
RefSeq Acc Id: ENSRNOP00000096758   ⟸   ENSRNOT00000117888

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JJ09-F1-model_v2 AlphaFold Q9JJ09 1-695 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620889 AgrOrtholog
BioCyc Gene G2FUF-15607 BioCyc
Ensembl Genes ENSRNOG00000004626 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000050889 UniProtKB/TrEMBL
  ENSRNOP00000083766 ENTREZGENE
Ensembl Transcript ENSRNOT00000048509 UniProtKB/TrEMBL
  ENSRNOT00000111481 ENTREZGENE
IMAGE_CLONE IMAGE:7099656 IMAGE-MGC_LOAD
InterPro Na/Pi_transpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na/Pi_transpt_2B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:84395 UniProtKB/Swiss-Prot
MGC_CLONE MGC:91585 IMAGE-MGC_LOAD
NCBI Gene 84395 ENTREZGENE
PANTHER PTHR10010 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10010:SF23 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Na_Pi_cotrans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc34a2 PhenoGen
TIGRFAMs 2a58 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0H2UHZ0_RAT UniProtKB/TrEMBL
  NPT2B_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q8VI55 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-09 Slc34a2  solute carrier family 34 member 2  Slc34a2  solute carrier family 34 (type II sodium/phosphate cotransporter), member 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-11-26 Slc34a2  solute carrier family 34 (type II sodium/phosphate cotransporter), member 2  Slc34a2  solute carrier family 34 (type II sodium/phosphate contransporter), member 2  Name changed 629549 APPROVED
2013-08-02 Slc34a2  solute carrier family 34 (type II sodium/phosphate contransporter), member 2  Slc34a2  solute carrier family 34 (sodium phosphate), member 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Slc34a2  solute carrier family 34 (sodium phosphate), member 2      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Slc34a2  solute carrier family 34 (sodium phosphate), member 2      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in type II alveolar cells of the developing lung 634065