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Gene: Ctcf (CCCTC-binding factor) Rattus norvegicus
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Symbol: Ctcf
Name: CCCTC-binding factor
RGD ID: 621344
Description: Predicted to have DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and chromatin insulator sequence binding activity. Involved in positive regulation of pri-miRNA transcription by RNA polymerase II. Predicted to localize to chromosome and nuclear lumen. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 21. Orthologous to human CTCF (CCCTC-binding factor); INTERACTS WITH ammonium chloride; bisphenol A; diazinon.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 11-zinc finger protein; CCCTC-binding factor (zinc finger protein); CTCFL paralog; transcriptional repressor CTCF
Orthologs:
Homo sapiens (human) : CTCF (CCCTC-binding factor)  HGNC  Alliance
Mus musculus (house mouse) : Ctcf (CCCTC-binding factor)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ctcf (CCCTC-binding factor)
Pan paniscus (bonobo/pygmy chimpanzee) : CTCF (CCCTC-binding factor)
Canis lupus familiaris (dog) : CTCF (CCCTC-binding factor)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ctcf (CCCTC-binding factor)
Sus scrofa (pig) : CTCF (CCCTC-binding factor)
Chlorocebus sabaeus (African green monkey) : CTCF (CCCTC-binding factor)
Heterocephalus glaber (naked mole-rat) : Ctcf (CCCTC-binding factor)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01937,600,151 - 37,649,674 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,600,148 - 37,649,673 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,467,547 - 48,516,378 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,461,942 - 35,514,934 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11935,466,822 - 35,519,814 (+)NCBI
Celera1932,950,156 - 32,999,072 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Ctcf
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 621344
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.