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Gene: Prdm1 (PR/SET domain 1) Rattus norvegicus
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Symbol: Prdm1
Name: PR/SET domain 1
Description: Predicted to have several functions, including DNA binding activity; DNA-binding transcription repressor activity, RNA polymerase II-specific; and histone deacetylase binding activity. Predicted to be involved in several processes, including circulatory system development; placenta development; and regulation of lymphocyte activation. Predicted to localize to the cytoplasm and nucleus. Orthologous to human PRDM1 (PR/SET domain 1); INTERACTS WITH acrylamide; bisphenol A; endosulfan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC309871; PR domain 1; PR domain containing 1, with ZNF domain; PR domain zinc finger protein 1
Orthologs:
Homo sapiens (human) : PRDM1 (PR/SET domain 1)  HGNC  Alliance
Mus musculus (house mouse) : Prdm1 (PR domain containing 1, with ZNF domain)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Prdm1 (PR/SET domain 1)
Pan paniscus (bonobo/pygmy chimpanzee) : PRDM1 (PR/SET domain 1)
Canis lupus familiaris (dog) : PRDM1 (PR/SET domain 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Prdm1 (PR/SET domain 1)
Sus scrofa (pig) : PRDM1 (PR/SET domain 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02049,464,921 - 49,556,623 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2049,464,919 - 49,556,518 (-)Ensembl
Rnor_5.02051,096,616 - 51,118,240 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42048,438,224 - 48,459,848 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12048,469,384 - 48,488,777 (-)NCBI
Celera2052,026,331 - 52,047,919 (+)NCBICelera
Cytogenetic Map20q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Prdm1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1311765
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.