Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | genetic disease | | ISO | HM13 (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Inborn genetic diseases | ClinVar | | |
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Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | genetic disease | | ISO | HM13 (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Inborn genetic diseases | ClinVar | | |
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# | Reference Title | Reference Citation |
1. | TRC8-dependent degradation of hepatitis C virus immature core protein regulates viral propagation and pathogenesis. | Aizawa S, etal., Nat Commun. 2016 May 4;7:11379. doi: 10.1038/ncomms11379. |
2. | Inhibitors of signal peptide peptidase (SPP) affect HSV-1 infectivity in vitro and in vivo. | Allen SJ, etal., Exp Eye Res. 2014 Jun;123:8-15. doi: 10.1016/j.exer.2014.04.004. Epub 2014 Apr 24. |
3. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
4. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
5. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
6. | GOA pipeline | RGD automated data pipeline |
7. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
8. | Absence of Signal Peptide Peptidase, an Essential Herpes Simplex Virus 1 Glycoprotein K Binding Partner, Reduces Virus Infectivity In Vivo. | Wang S and Ghiasi H, J Virol. 2019 Nov 13;93(23). pii: JVI.01309-19. doi: 10.1128/JVI.01309-19. Print 2019 Dec 1. |
PMID:12972007 | PMID:14741365 | PMID:15385547 | PMID:15998642 | PMID:16730383 | PMID:16829952 | PMID:16873890 | PMID:17965014 | PMID:19946888 | PMID:25002582 | PMID:25239945 | PMID:27996060 |
Hm13 (Rattus norvegicus - Norway rat) |
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HM13 (Homo sapiens - human) |
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H13 (Mus musculus - house mouse) |
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Hm13 (Chinchilla lanigera - long-tailed chinchilla) |
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HM13 (Pan paniscus - bonobo/pygmy chimpanzee) |
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HM13 (Canis lupus familiaris - dog) |
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Hm13 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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HM13 (Sus scrofa - pig) |
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HM13 (Chlorocebus sabaeus - green monkey) |
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Hm13 (Heterocephalus glaber - naked mole-rat) |
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Variants in Hm13
142 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
BE109797 |
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RH135106 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 43 | 57 | 41 | 19 | 41 | 5 | 8 | 74 | 35 | 41 | 11 | 5 |
Low | 3 | 3 | 3 | ||||||||||
Below cutoff |
RefSeq Transcripts | NM_001399536 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001399537 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008762330 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063283823 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | CH474050 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
FQ218565 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ220534 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ231155 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000003 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000010251 ⟹ ENSRNOP00000010251 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000087075 ⟹ ENSRNOP00000072050 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000094861 ⟹ ENSRNOP00000091932 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000095517 ⟹ ENSRNOP00000077139 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000099070 ⟹ ENSRNOP00000086681 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000104940 ⟹ ENSRNOP00000076593 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000107605 ⟹ ENSRNOP00000086628 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000109118 ⟹ ENSRNOP00000080850 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001399536 ⟹ NP_001386465 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001399537 ⟹ NP_001386466 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063283823 ⟹ XP_063139893 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001386465 | (Get FASTA) | NCBI Sequence Viewer |
NP_001386466 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063139893 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | EDL86051 | (Get FASTA) | NCBI Sequence Viewer |
EDL86052 | (Get FASTA) | NCBI Sequence Viewer | |
EDL86053 | (Get FASTA) | NCBI Sequence Viewer | |
EDL86054 | (Get FASTA) | NCBI Sequence Viewer | |
EDL86055 | (Get FASTA) | NCBI Sequence Viewer | |
EDL86056 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000010251.5 | ||
ENSRNOP00000072050 | |||
ENSRNOP00000072050.2 | |||
ENSRNOP00000076593.1 | |||
ENSRNOP00000077139.1 | |||
ENSRNOP00000086628.1 | |||
ENSRNOP00000086681 | |||
ENSRNOP00000086681.1 | |||
ENSRNOP00000091932.1 |
RefSeq Acc Id: | ENSRNOP00000072050 ⟸ ENSRNOT00000087075 |
RefSeq Acc Id: | ENSRNOP00000010251 ⟸ ENSRNOT00000010251 |
RefSeq Acc Id: | ENSRNOP00000086628 ⟸ ENSRNOT00000107605 |
RefSeq Acc Id: | ENSRNOP00000080850 ⟸ ENSRNOT00000109118 |
RefSeq Acc Id: | ENSRNOP00000076593 ⟸ ENSRNOT00000104940 |
RefSeq Acc Id: | ENSRNOP00000091932 ⟸ ENSRNOT00000094861 |
RefSeq Acc Id: | ENSRNOP00000086681 ⟸ ENSRNOT00000099070 |
RefSeq Acc Id: | ENSRNOP00000077139 ⟸ ENSRNOT00000095517 |
RefSeq Acc Id: | NP_001386465 ⟸ NM_001399536 |
- Peptide Label: | isoform 1 |
- UniProtKB: | A0A8I6A6G8 (UniProtKB/TrEMBL), A6KHQ0 (UniProtKB/TrEMBL), A6KHP8 (UniProtKB/TrEMBL), D3ZP98 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | NP_001386466 ⟸ NM_001399537 |
- Peptide Label: | isoform 2 |
- UniProtKB: | A6KHP9 (UniProtKB/TrEMBL), A0A8I5Y7G8 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063139893 ⟸ XM_063283823 |
- Peptide Label: | isoform X1 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-A0A0G2K1Z9-F1-model_v2 | AlphaFold | A0A0G2K1Z9 | 1-378 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13692548 | ||||||||
Promoter ID: | EPDNEW_R3072 | ||||||||
Type: | initiation region | ||||||||
Name: | Hm13_1 | ||||||||
Description: | histocompatibility minor 13 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1308946 | AgrOrtholog |
BioCyc Gene | G2FUF-47252 | BioCyc |
Ensembl Genes | ENSRNOG00000007738 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000010251.6 | UniProtKB/TrEMBL |
ENSRNOT00000087075 | ENTREZGENE | |
ENSRNOT00000087075.2 | UniProtKB/TrEMBL | |
ENSRNOT00000094861.1 | UniProtKB/TrEMBL | |
ENSRNOT00000095517.1 | UniProtKB/TrEMBL | |
ENSRNOT00000099070 | ENTREZGENE | |
ENSRNOT00000099070.1 | UniProtKB/TrEMBL | |
ENSRNOT00000104940.1 | UniProtKB/TrEMBL | |
ENSRNOT00000107605.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.10.472.100 | UniProtKB/TrEMBL |
InterPro | Peptidase_A22 | UniProtKB/TrEMBL |
Peptidase_A22B_SPP | UniProtKB/TrEMBL | |
Presenilin_C | UniProtKB/TrEMBL | |
KEGG Report | rno:311545 | UniProtKB/TrEMBL |
NCBI Gene | 311545 | ENTREZGENE |
PANTHER | MINOR HISTOCOMPATIBILITY ANTIGEN H13 | UniProtKB/TrEMBL |
Peptidase_A22B | UniProtKB/TrEMBL | |
Pfam | Peptidase_A22B | UniProtKB/TrEMBL |
PhenoGen | Hm13 | PhenoGen |
RatGTEx | ENSRNOG00000007738 | RatGTEx |
SMART | PSN | UniProtKB/TrEMBL |
UniProt | A0A0G2K1Z9_RAT | UniProtKB/TrEMBL |
A0A8I5Y7G8 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8I5Y910_RAT | UniProtKB/TrEMBL | |
A0A8I6A669_RAT | UniProtKB/TrEMBL | |
A0A8I6A6G8 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8I6AEK7_RAT | UniProtKB/TrEMBL | |
A6KHP8 | ENTREZGENE, UniProtKB/TrEMBL | |
A6KHP9 | ENTREZGENE, UniProtKB/TrEMBL | |
A6KHQ0 | ENTREZGENE, UniProtKB/TrEMBL | |
D3ZP98 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2014-06-06 | Hm13 | histocompatibility minor 13 | Hm13 | histocompatibility 13 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2011-04-29 | Hm13 | histocompatibility 13 | H13 | histocompatibility 13 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-04-30 | H13 | histocompatibility 13 | H13_predicted | histocompatibility 13 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2005-01-12 | H13_predicted | histocompatibility 13 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |