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Gene: Sox18 (SRY-box transcription factor 18) Rattus norvegicus
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Symbol: Sox18
Name: SRY-box transcription factor 18
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II proximal promoter sequence-specific DNA binding activity; and protein heterodimerization activity. Predicted to be involved in several processes, including circulatory system development; mRNA transcription by RNA polymerase II; and regulation of transcription by RNA polymerase II. Predicted to localize to the nuclear chromatin and nuclear transcription factor complex. Orthologous to human SOX18 (SRY-box transcription factor 18); INTERACTS WITH 6-propyl-2-thiouracil; benzo[a]pyrene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC311723; SRY (sex determining region Y)-box 18; SRY box 18; SRY-box containing gene 18; transcription factor SOX-18
Orthologs:
Homo sapiens (human) : SOX18 (SRY-box transcription factor 18)  HGNC  Alliance
Mus musculus (house mouse) : Sox18 (SRY (sex determining region Y)-box 18)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sox18 (SRY-box transcription factor 18)
Canis lupus familiaris (dog) : SOX18 (SRY-box transcription factor 18)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sox18 (SRY-box transcription factor 18)
Sus scrofa (pig) : SOX18 (SRY-box transcription factor 18)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03177,177,237 - 177,179,039 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3177,177,310 - 177,179,127 (-)Ensembl
Rnor_5.03180,885,768 - 180,887,570 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,820,460 - 170,822,262 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13170,726,497 - 170,728,298 (-)NCBI
Celera3163,800,470 - 163,802,272 (+)NCBICelera
Cytogenetic Map3q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Sox18
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1311718
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.