Ankrd11 (ankyrin repeat domain containing 11) - Rat Genome Database

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Gene: Ankrd11 (ankyrin repeat domain containing 11) Rattus norvegicus
Analyze
Symbol: Ankrd11
Name: ankyrin repeat domain containing 11
RGD ID: 1306679
Description: Predicted to enable identical protein binding activity. Predicted to be involved in anatomical structure morphogenesis. Predicted to act upstream of or within several processes, including face morphogenesis; odontogenesis of dentin-containing tooth; and skeletal system development. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in KBG syndrome. Orthologous to human ANKRD11 (ankyrin repeat domain containing 11); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ankyrin repeat domain 11; ankyrin repeat domain-containing protein 11; LOC365023
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21950,940,284 - 51,098,962 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1950,940,299 - 51,098,962 (-)Ensembl
Rnor_6.01955,703,831 - 55,862,446 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1955,703,824 - 55,737,500 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01966,409,861 - 66,567,829 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41953,208,631 - 53,242,478 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11953,214,345 - 53,247,301 (-)NCBI
Celera1950,177,680 - 50,232,195 (-)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (IBA,ISO)

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:17986521   PMID:21782149  


Genomics

Comparative Map Data
Ankrd11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21950,940,284 - 51,098,962 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1950,940,299 - 51,098,962 (-)Ensembl
Rnor_6.01955,703,831 - 55,862,446 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1955,703,824 - 55,737,500 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01966,409,861 - 66,567,829 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41953,208,631 - 53,242,478 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11953,214,345 - 53,247,301 (-)NCBI
Celera1950,177,680 - 50,232,195 (-)NCBICelera
Cytogenetic Map19q12NCBI
ANKRD11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381689,267,630 - 89,490,561 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1689,267,630 - 89,490,561 (-)EnsemblGRCh38hg38GRCh38
GRCh371689,334,038 - 89,556,969 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361687,861,536 - 88,084,470 (-)NCBINCBI36hg18NCBI36
Build 341687,861,535 - 88,084,470NCBI
Celera1674,399,601 - 74,619,674 (-)NCBI
Cytogenetic Map16q24.3NCBI
HuRef1675,032,324 - 75,253,882 (-)NCBIHuRef
CHM1_11690,745,287 - 90,968,233 (-)NCBICHM1_1
Ankrd11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398123,610,060 - 123,769,023 (-)NCBIGRCm39mm39
GRCm39 Ensembl8123,610,561 - 123,769,016 (-)Ensembl
GRCm388122,883,321 - 123,042,284 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8122,883,822 - 123,042,277 (-)EnsemblGRCm38mm10GRCm38
MGSCv378125,407,221 - 125,498,693 (-)NCBIGRCm37mm9NCBIm37
MGSCv368125,769,411 - 125,928,351 (-)NCBImm8
Celera8127,117,834 - 127,209,030 (-)NCBICelera
Cytogenetic Map8E1NCBI
Ankrd11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555412,919,631 - 2,961,445 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555412,921,230 - 3,033,612 (-)NCBIChiLan1.0ChiLan1.0
ANKRD11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11689,632,991 - 89,795,110 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1689,633,849 - 89,683,311 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01669,994,926 - 70,242,659 (-)NCBIMhudiblu_PPA_v0panPan3
ANKRD11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1564,047,188 - 64,229,582 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl564,047,175 - 64,229,077 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha564,050,803 - 64,241,172 (+)NCBI
ROS_Cfam_1.0564,266,048 - 64,456,649 (+)NCBI
ROS_Cfam_1.0 Ensembl564,265,693 - 64,456,671 (+)Ensembl
UMICH_Zoey_3.1564,285,955 - 64,475,956 (+)NCBI
UNSW_CanFamBas_1.0564,123,399 - 64,314,025 (+)NCBI
UU_Cfam_GSD_1.0564,530,257 - 64,720,918 (+)NCBI
Ankrd11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934924,815,567 - 24,908,385 (+)NCBI
SpeTri2.0NW_004936641569,002 - 661,935 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6455,851 - 616,199 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16455,856 - 612,878 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26758,311 - 772,968 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1574,630,108 - 74,682,232 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl574,628,310 - 74,682,232 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666047667,335 - 901,109 (+)NCBIVero_WHO_p1.0
Ankrd11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624746378,123 - 576,809 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
BE097847  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21950,951,936 - 50,952,114 (+)MAPPERmRatBN7.2
Rnor_6.01955,715,484 - 55,715,661NCBIRnor6.0
Rnor_5.01966,421,514 - 66,421,691UniSTSRnor5.0
RGSC_v3.41953,220,277 - 53,220,454UniSTSRGSC3.4
Celera1950,189,334 - 50,189,511UniSTS
RH 3.4 Map19710.81UniSTS
Cytogenetic Map19q12UniSTS
BE105814  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21951,073,780 - 51,073,939 (+)MAPPERmRatBN7.2
Rnor_6.01955,837,448 - 55,837,606NCBIRnor6.0
Rnor_5.01966,542,931 - 66,543,089UniSTSRnor5.0
RGSC_v3.41953,349,236 - 53,349,394UniSTSRGSC3.4
RH 3.4 Map19708.31UniSTS
Cytogenetic Map19q12UniSTS
BE105999  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21950,950,632 - 50,950,797 (+)MAPPERmRatBN7.2
Rnor_6.01955,714,180 - 55,714,344NCBIRnor6.0
Rnor_5.01966,420,210 - 66,420,374UniSTSRnor5.0
RGSC_v3.41953,218,973 - 53,219,137UniSTSRGSC3.4
Celera1950,188,030 - 50,188,194UniSTS
RH 3.4 Map19707.51UniSTS
Cytogenetic Map19q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194997648153225766Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:190
Count of miRNA genes:82
Interacting mature miRNAs:94
Transcripts:ENSRNOT00000031389, ENSRNOT00000058258
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 40 52 36 19 36 6 9 74 35 40 11 6
Low 3 5 5 5 2 2 1 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001374009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC141337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA504097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000031389   ⟹   ENSRNOP00000035742
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1950,940,299 - 50,973,806 (-)Ensembl
Rnor_6.0 Ensembl1955,703,824 - 55,737,500 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103866   ⟹   ENSRNOP00000080527
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1950,940,299 - 51,098,676 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104166   ⟹   ENSRNOP00000080714
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1950,940,299 - 50,959,408 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113041   ⟹   ENSRNOP00000090403
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1950,940,299 - 51,098,962 (-)Ensembl
RefSeq Acc Id: NM_001374009   ⟹   NP_001360938
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,940,295 - 51,098,962 (-)NCBI
RefSeq Acc Id: XM_008772667   ⟹   XP_008770889
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,940,290 - 51,098,755 (-)NCBI
Rnor_6.01955,703,831 - 55,862,446 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601456   ⟹   XP_017456945
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,940,290 - 51,098,755 (-)NCBI
Rnor_6.01955,703,831 - 55,862,445 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039097914   ⟹   XP_038953842
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,940,284 - 50,965,367 (-)NCBI
RefSeq Acc Id: XM_039097915   ⟹   XP_038953843
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,940,284 - 50,965,367 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_008770889   ⟸   XM_008772667
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017456945   ⟸   XM_017601456
- Peptide Label: isoform X2
- UniProtKB: D3ZSU6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000035742   ⟸   ENSRNOT00000031389
RefSeq Acc Id: XP_038953843   ⟸   XM_039097915
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038953842   ⟸   XM_039097914
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001360938   ⟸   NM_001374009
RefSeq Acc Id: ENSRNOP00000090403   ⟸   ENSRNOT00000113041
RefSeq Acc Id: ENSRNOP00000080527   ⟸   ENSRNOT00000103866
RefSeq Acc Id: ENSRNOP00000080714   ⟸   ENSRNOT00000104166

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZSU6-F1-model_v2 AlphaFold D3ZSU6 1-2605 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
19 55713444 55713445 G T snv LEW/Crl (RGD), LEW/Crl (2019), LEW/NCrlBR (RGD)


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
19 50949897 50949898 G T snv LEW/Crl (2019)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306679 AgrOrtholog
BioCyc Gene G2FUF-5359 BioCyc
Ensembl Genes ENSRNOG00000027906 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000035742 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000080527 ENTREZGENE
  ENSRNOP00000090403 ENTREZGENE
Ensembl Transcript ENSRNOT00000031389 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000103866 ENTREZGENE
  ENSRNOT00000113041 ENTREZGENE
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro ANKRD11 UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
NCBI Gene 365023 ENTREZGENE
PANTHER PTHR24145 UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
PhenoGen Ankrd11 PhenoGen
PROSITE ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP ANK UniProtKB/TrEMBL
UniProt D3ZSU6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-12-16 Ankrd11  ankyrin repeat domain containing 11  Ankrd11  ankyrin repeat domain 11  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Ankrd11  ankyrin repeat domain 11   Ankrd11_predicted  ankyrin repeat domain 11 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ankrd11_predicted  ankyrin repeat domain 11 (predicted)      Symbol and Name status set to approved 70820 APPROVED