Ankrd11 (ankyrin repeat domain 11) - Rat Genome Database

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Gene: Ankrd11 (ankyrin repeat domain 11) Rattus norvegicus
Analyze
Symbol: Ankrd11
Name: ankyrin repeat domain 11
RGD ID: 1306679
Description: Predicted to have identical protein binding activity. Predicted to be involved in several processes, including face morphogenesis; odontogenesis of dentin-containing tooth; and skeletal system development. Predicted to localize to cytosol and nucleoplasm. Human ortholog(s) of this gene implicated in KBG syndrome. Orthologous to human ANKRD11 (ankyrin repeat domain 11); INTERACTS WITH 2,4-dinitrotoluene; bisphenol A; chloroprene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: ankyrin repeat domain-containing protein 11; LOC365023
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21950,940,284 - 51,098,962 (-)NCBI
Rnor_6.0 Ensembl1955,703,824 - 55,737,500 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01955,703,831 - 55,862,446 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01966,409,861 - 66,567,829 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41953,208,631 - 53,242,478 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11953,214,345 - 53,247,301 (-)NCBI
Celera1950,177,680 - 50,232,195 (-)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,ISO)

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:17986521   PMID:21782149  


Genomics

Comparative Map Data
Ankrd11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21950,940,284 - 51,098,962 (-)NCBI
Rnor_6.0 Ensembl1955,703,824 - 55,737,500 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01955,703,831 - 55,862,446 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01966,409,861 - 66,567,829 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41953,208,631 - 53,242,478 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11953,214,345 - 53,247,301 (-)NCBI
Celera1950,177,680 - 50,232,195 (-)NCBICelera
Cytogenetic Map19q12NCBI
ANKRD11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1689,267,630 - 89,490,561 (-)EnsemblGRCh38hg38GRCh38
GRCh381689,267,619 - 89,490,561 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371689,334,038 - 89,556,969 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361687,861,536 - 88,084,470 (-)NCBINCBI36hg18NCBI36
Build 341687,861,535 - 88,084,470NCBI
Celera1674,399,601 - 74,619,674 (-)NCBI
Cytogenetic Map16q24.3NCBI
HuRef1675,032,324 - 75,253,882 (-)NCBIHuRef
CHM1_11690,745,287 - 90,968,233 (-)NCBICHM1_1
Ankrd11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398123,610,060 - 123,769,023 (-)NCBIGRCm39mm39
GRCm39 Ensembl8123,610,561 - 123,769,016 (-)Ensembl
GRCm388122,883,321 - 123,042,284 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8122,883,822 - 123,042,277 (-)EnsemblGRCm38mm10GRCm38
MGSCv378125,407,221 - 125,498,693 (-)NCBIGRCm37mm9NCBIm37
MGSCv368125,769,411 - 125,928,351 (-)NCBImm8
Celera8127,117,834 - 127,209,030 (-)NCBICelera
Cytogenetic Map8E1NCBI
Ankrd11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555412,919,631 - 2,961,445 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555412,921,230 - 3,033,612 (-)NCBIChiLan1.0ChiLan1.0
ANKRD11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11689,632,991 - 89,795,110 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1689,633,849 - 89,683,311 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01669,994,926 - 70,242,659 (-)NCBIMhudiblu_PPA_v0panPan3
ANKRD11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1564,047,188 - 64,229,582 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl564,047,175 - 64,229,077 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha564,050,803 - 64,241,172 (+)NCBI
ROS_Cfam_1.0564,266,048 - 64,456,649 (+)NCBI
UMICH_Zoey_3.1564,285,955 - 64,475,956 (+)NCBI
UNSW_CanFamBas_1.0564,123,399 - 64,314,025 (+)NCBI
UU_Cfam_GSD_1.0564,530,257 - 64,720,918 (+)NCBI
Ankrd11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934924,815,567 - 24,908,385 (+)NCBI
SpeTri2.0NW_004936641569,002 - 661,935 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6455,851 - 616,199 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16455,856 - 612,878 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26758,311 - 772,968 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD11
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1574,630,108 - 74,682,232 (-)NCBI
ChlSab1.1 Ensembl574,628,310 - 74,682,232 (-)Ensembl
Vero_WHO_p1.0NW_023666047667,335 - 901,109 (+)NCBI
Ankrd11
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624746378,123 - 576,809 (+)NCBI

Position Markers
BE097847  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21950,951,936 - 50,952,114 (+)MAPPER
Rnor_6.01955,715,484 - 55,715,661NCBIRnor6.0
Rnor_5.01966,421,514 - 66,421,691UniSTSRnor5.0
RGSC_v3.41953,220,277 - 53,220,454UniSTSRGSC3.4
Celera1950,189,334 - 50,189,511UniSTS
RH 3.4 Map19710.81UniSTS
Cytogenetic Map19q12UniSTS
BE105814  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21951,073,780 - 51,073,939 (+)MAPPER
Rnor_6.01955,837,448 - 55,837,606NCBIRnor6.0
Rnor_5.01966,542,931 - 66,543,089UniSTSRnor5.0
RGSC_v3.41953,349,236 - 53,349,394UniSTSRGSC3.4
RH 3.4 Map19708.31UniSTS
Cytogenetic Map19q12UniSTS
BE105999  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21950,950,632 - 50,950,797 (+)MAPPER
Rnor_6.01955,714,180 - 55,714,344NCBIRnor6.0
Rnor_5.01966,420,210 - 66,420,374UniSTSRnor5.0
RGSC_v3.41953,218,973 - 53,219,137UniSTSRGSC3.4
Celera1950,188,030 - 50,188,194UniSTS
RH 3.4 Map19707.51UniSTS
Cytogenetic Map19q12UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19243296362275575Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19650676160220581Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191899398262275575Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191917749562275575Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)192140778762275575Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192481825762275575Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)193299439262275575Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193791679960220451Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193791679960220451Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194883071260220581Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)195473521758072143Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:190
Count of miRNA genes:82
Interacting mature miRNAs:94
Transcripts:ENSRNOT00000031389, ENSRNOT00000058258
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 40 52 36 19 36 6 9 74 35 40 11 6
Low 3 5 5 5 2 2 1 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001374009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC141337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA504097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000031389   ⟹   ENSRNOP00000035742
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1955,703,824 - 55,737,500 (-)Ensembl
RefSeq Acc Id: NM_001374009   ⟹   NP_001360938
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,940,295 - 51,098,962 (-)NCBI
RefSeq Acc Id: XM_003753116   ⟹   XP_003753164
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1950,177,680 - 50,202,896 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008772666   ⟹   XP_008770888
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01955,703,831 - 55,862,445 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008772667   ⟹   XP_008770889
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,940,290 - 51,098,755 (-)NCBI
Rnor_6.01955,703,831 - 55,862,446 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008774255   ⟹   XP_008772477
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1950,177,680 - 50,232,195 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008774256   ⟹   XP_008772478
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1950,177,680 - 50,232,195 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601455   ⟹   XP_017456944
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01955,703,831 - 55,758,461 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601456   ⟹   XP_017456945
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,940,290 - 51,098,755 (-)NCBI
Rnor_6.01955,703,831 - 55,862,445 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039097914   ⟹   XP_038953842
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,940,284 - 50,965,367 (-)NCBI
RefSeq Acc Id: XM_039097915   ⟹   XP_038953843
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21950,940,284 - 50,965,367 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_003753164   ⟸   XM_003753116
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008772478   ⟸   XM_008774256
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008772477   ⟸   XM_008774255
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008770889   ⟸   XM_008772667
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008770888   ⟸   XM_008772666
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017456945   ⟸   XM_017601456
- Peptide Label: isoform X2
- UniProtKB: D3ZSU6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456944   ⟸   XM_017601455
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000035742   ⟸   ENSRNOT00000031389
RefSeq Acc Id: XP_038953843   ⟸   XM_039097915
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038953842   ⟸   XM_039097914
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001360938   ⟸   NM_001374009
Protein Domains
ANK_REP_REGION

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306679 AgrOrtholog
Ensembl Genes ENSRNOG00000027906 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000035742 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000031389 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro ANKRD11 UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_dom UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
KEGG Report rno:365023 UniProtKB/TrEMBL
NCBI Gene 365023 ENTREZGENE
PANTHER PTHR24145 UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
PhenoGen Ankrd11 PhenoGen
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP ANK UniProtKB/TrEMBL
UniProt D3ZSU6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Ankrd11  ankyrin repeat domain 11   Ankrd11_predicted  ankyrin repeat domain 11 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ankrd11_predicted  ankyrin repeat domain 11 (predicted)      Symbol and Name status set to approved 70820 APPROVED