Slc25a34 (solute carrier family 25, member 34) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Slc25a34 (solute carrier family 25, member 34) Rattus norvegicus
Analyze
Symbol: Slc25a34
Name: solute carrier family 25, member 34
RGD ID: 1359157
Description: Predicted to act upstream of or within blastocyst hatching. Predicted to be located in mitochondrial inner membrane. Orthologous to human SLC25A34 (solute carrier family 25 member 34); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC298606; similar to RIKEN cDNA 1810012H11; solute carrier family 25 member 34
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25153,932,081 - 153,936,854 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx5156,617,226 - 156,621,996 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.05158,390,504 - 158,395,274 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.05158,379,678 - 158,384,448 (-)NCBIRnor_WKY
Rnor_6.05160,175,206 - 160,179,978 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5160,176,124 - 160,179,978 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05163,890,563 - 163,894,419 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45160,519,856 - 160,523,712 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15160,530,045 - 160,533,900 (-)NCBI
Celera5152,288,205 - 152,292,977 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:18614015   PMID:27869233  


Genomics

Comparative Map Data
Slc25a34
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25153,932,081 - 153,936,854 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx5156,617,226 - 156,621,996 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.05158,390,504 - 158,395,274 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.05158,379,678 - 158,384,448 (-)NCBIRnor_WKY
Rnor_6.05160,175,206 - 160,179,978 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5160,176,124 - 160,179,978 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05163,890,563 - 163,894,419 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45160,519,856 - 160,523,712 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15160,530,045 - 160,533,900 (-)NCBI
Celera5152,288,205 - 152,292,977 (-)NCBICelera
Cytogenetic Map5q36NCBI
SLC25A34
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38115,736,258 - 15,741,392 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl115,736,258 - 15,741,392 (+)EnsemblGRCh38hg38GRCh38
GRCh37116,062,753 - 16,067,887 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36115,935,396 - 15,940,471 (+)NCBINCBI36Build 36hg18NCBI36
Celera114,545,826 - 14,550,901 (+)NCBICelera
Cytogenetic Map1p36.21NCBI
HuRef114,581,786 - 14,586,858 (+)NCBIHuRef
CHM1_1115,861,410 - 15,866,482 (+)NCBICHM1_1
T2T-CHM13v2.0115,179,763 - 15,186,130 (+)NCBIT2T-CHM13v2.0
Slc25a34
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394141,346,130 - 141,351,202 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4141,346,135 - 141,351,132 (-)EnsemblGRCm39 Ensembl
GRCm384141,618,819 - 141,623,891 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4141,618,824 - 141,623,821 (-)EnsemblGRCm38mm10GRCm38
MGSCv374141,174,739 - 141,179,749 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364140,890,900 - 140,895,910 (-)NCBIMGSCv36mm8
Celera4143,441,650 - 143,447,213 (-)NCBICelera
Cytogenetic Map4D3NCBI
Slc25a34
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555272,433,577 - 2,437,343 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555272,433,577 - 2,437,348 (-)NCBIChiLan1.0ChiLan1.0
SLC25A34
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11210,423,274 - 210,429,767 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0114,877,351 - 14,883,769 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1115,870,289 - 15,874,956 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl115,870,289 - 15,875,099 (+)Ensemblpanpan1.1panPan2
SLC25A34
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1281,859,294 - 81,864,808 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl281,860,234 - 81,863,494 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,397,257 - 78,402,075 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0282,507,877 - 82,512,692 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl282,507,895 - 82,512,066 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1279,261,239 - 79,266,057 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0280,279,274 - 80,284,086 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0281,345,216 - 81,349,965 (-)NCBIUU_Cfam_GSD_1.0
Slc25a34
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505837,541,409 - 37,546,539 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364743,367,695 - 3,370,133 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049364743,367,374 - 3,371,315 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A34
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl674,909,705 - 74,914,426 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1674,909,637 - 74,914,430 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2669,389,608 - 69,394,491 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A34
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120116,564,687 - 116,568,695 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20116,565,024 - 116,567,981 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605420,096,900 - 20,103,467 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Slc25a34
36 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:187
Count of miRNA genes:134
Interacting mature miRNAs:146
Transcripts:ENSRNOT00000022820
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5143799107158428037Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5144358090157869054Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5144377876161317411Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5151006154161165494Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5151113452164465185Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat

Markers in Region
D5Uwm46  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25153,933,738 - 153,933,898 (+)MAPPERmRatBN7.2
Rnor_6.05160,176,864 - 160,177,023NCBIRnor6.0
Rnor_5.05163,891,305 - 163,891,464UniSTSRnor5.0
RGSC_v3.45160,520,597 - 160,520,757RGDRGSC3.4
RGSC_v3.45160,520,598 - 160,520,757UniSTSRGSC3.4
RGSC_v3.15160,530,785 - 160,530,945RGD
Celera5152,289,863 - 152,290,022UniSTS
Cytogenetic Map5q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 23 3 4 18 14 3
Low 3 20 26 15 14 15 5 7 54 21 41 11 5
Below cutoff 31 26 5 26 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000022820   ⟹   ENSRNOP00000022820
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5160,176,124 - 160,179,978 (-)Ensembl
RefSeq Acc Id: NM_001013936   ⟹   NP_001013958
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25153,932,081 - 153,936,854 (-)NCBI
Rnor_6.05160,175,206 - 160,179,978 (-)NCBI
Rnor_5.05163,890,563 - 163,894,419 (-)NCBI
RGSC_v3.45160,519,856 - 160,523,712 (-)RGD
Celera5152,288,205 - 152,292,977 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001013958 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH83723 (Get FASTA)   NCBI Sequence Viewer  
  EDL81000 (Get FASTA)   NCBI Sequence Viewer  
  Q5XIF9 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001013958   ⟸   NM_001013936
- UniProtKB: Q5XIF9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000022820   ⟸   ENSRNOT00000022820

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIF9-F1-model_v2 AlphaFold Q5XIF9 1-318 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694230
Promoter ID:EPDNEW_R4755
Type:multiple initiation site
Name:Slc25a34_1
Description:solute carrier family 25, member 34
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05160,179,983 - 160,180,043EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359157 AgrOrtholog
BioCyc Gene G2FUF-39336 BioCyc
Ensembl Genes ENSRNOG00000021526 Ensembl
Gene3D-CATH 1.50.40.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7191003 IMAGE-MGC_LOAD
InterPro Mitochondrial_sb/sol_carrier UniProtKB/Swiss-Prot
  Mt_carrier_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:298606 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94620 IMAGE-MGC_LOAD
NCBI Gene 298606 ENTREZGENE
PANTHER RE38146P UniProtKB/Swiss-Prot
  SOLUTE CARRIER FAMILY 25 MEMBER 34 UniProtKB/Swiss-Prot
Pfam Mito_carr UniProtKB/Swiss-Prot
PhenoGen Slc25a34 PhenoGen
PROSITE SOLCAR UniProtKB/Swiss-Prot
Superfamily-SCOP SSF103506 UniProtKB/Swiss-Prot
UniProt Q5XIF9 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Slc25a34  solute carrier family 25, member 34  LOC298606  similar to RIKEN cDNA 1810012H11  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 LOC298606  similar to RIKEN cDNA 1810012H11      Symbol and Name status set to provisional 70820 PROVISIONAL