Uspl1 (ubiquitin specific peptidase like 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Uspl1 (ubiquitin specific peptidase like 1) Rattus norvegicus
Analyze
Symbol: Uspl1
Name: ubiquitin specific peptidase like 1
RGD ID: 1310835
Description: Predicted to enable SUMO binding activity and deSUMOylase activity. Predicted to be involved in several processes, including Cajal body organization; protein desumoylation; and snRNA transcription. Predicted to act upstream of or within blastocyst formation. Predicted to be active in Cajal body. Orthologous to human USPL1 (ubiquitin specific peptidase like 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical LOC288447; LOC288447; RGD1310835; SUMO-specific isopeptidase USPL1; ubiquitin-specific peptidase-like protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81210,859,764 - 10,886,761 (-)NCBIGRCr8
mRatBN7.2125,823,460 - 5,850,470 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl125,823,359 - 5,850,366 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx126,495,299 - 6,521,899 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0127,118,425 - 7,145,025 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0126,146,430 - 6,173,029 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0126,930,018 - 6,957,027 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl126,929,978 - 6,956,984 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0129,026,185 - 9,053,011 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4126,318,581 - 6,345,858 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1126,337,758 - 6,345,845 (-)NCBI
Celera127,581,451 - 7,608,343 (-)NCBICelera
Cytogenetic Map12p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Cajal body  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15632090   PMID:22664934   PMID:22878415   PMID:24413172   PMID:27869233  


Genomics

Comparative Map Data
Uspl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81210,859,764 - 10,886,761 (-)NCBIGRCr8
mRatBN7.2125,823,460 - 5,850,470 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl125,823,359 - 5,850,366 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx126,495,299 - 6,521,899 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0127,118,425 - 7,145,025 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0126,146,430 - 6,173,029 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0126,930,018 - 6,957,027 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl126,929,978 - 6,956,984 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0129,026,185 - 9,053,011 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4126,318,581 - 6,345,858 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1126,337,758 - 6,345,845 (-)NCBI
Celera127,581,451 - 7,608,343 (-)NCBICelera
Cytogenetic Map12p11NCBI
USPL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381330,617,920 - 30,660,766 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1330,617,693 - 30,660,770 (+)EnsemblGRCh38hg38GRCh38
GRCh371331,192,057 - 31,234,903 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361330,089,920 - 30,131,686 (+)NCBINCBI36Build 36hg18NCBI36
Build 341330,089,919 - 30,131,686NCBI
Celera1312,260,821 - 12,302,674 (+)NCBICelera
Cytogenetic Map13q12.3NCBI
HuRef1312,009,328 - 12,051,666 (+)NCBIHuRef
CHM1_11331,159,523 - 31,201,291 (+)NCBICHM1_1
T2T-CHM13v2.01329,839,977 - 29,882,805 (+)NCBIT2T-CHM13v2.0
Uspl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395149,121,338 - 149,152,246 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5149,121,160 - 149,152,244 (+)EnsemblGRCm39 Ensembl
GRCm385149,184,560 - 149,215,434 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5149,184,350 - 149,215,434 (+)EnsemblGRCm38mm10GRCm38
MGSCv375149,996,136 - 150,027,010 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365149,495,067 - 149,525,783 (+)NCBIMGSCv36mm8
Celera5147,199,738 - 147,230,612 (+)NCBICelera
Cytogenetic Map5G3NCBI
cM Map589.18NCBI
Uspl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543115,173,625 - 15,209,473 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543115,173,448 - 15,212,443 (-)NCBIChiLan1.0ChiLan1.0
USPL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21430,201,627 - 30,243,495 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11321,308,339 - 21,350,331 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01311,895,108 - 11,937,000 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11330,329,995 - 30,371,870 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1330,329,995 - 30,371,870 (+)Ensemblpanpan1.1panPan2
USPL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1259,397,575 - 9,430,058 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,397,763 - 9,427,431 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha259,442,413 - 9,475,896 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0259,509,054 - 9,542,555 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,509,061 - 9,542,397 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1259,403,303 - 9,436,787 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0259,411,676 - 9,444,966 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0259,453,709 - 9,487,196 (-)NCBIUU_Cfam_GSD_1.0
Uspl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945170,542,355 - 170,581,864 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647225,374,332 - 25,410,343 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647225,370,381 - 25,409,800 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USPL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl117,321,202 - 7,361,571 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1117,321,187 - 7,361,280 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2116,990,288 - 7,005,953 (-)NCBISscrofa10.2Sscrofa10.2susScr3
USPL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.139,502,322 - 9,546,633 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl39,504,682 - 9,546,319 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605734,818,942 - 34,863,740 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Uspl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247767,658,267 - 7,696,393 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247767,662,591 - 7,698,811 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Uspl1
97 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:518
Count of miRNA genes:237
Interacting mature miRNAs:291
Transcripts:ENSRNOT00000001210, ENSRNOT00000072129
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)1219318387Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12390696910373166Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12136247923Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)127977298525593Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat

Markers in Region
D12Got7  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2125,835,967 - 5,836,267 (+)MAPPERmRatBN7.2
Rnor_6.0126,942,521 - 6,942,820NCBIRnor6.0
Rnor_5.0129,038,688 - 9,038,987UniSTSRnor5.0
RGSC_v3.4126,331,072 - 6,331,372RGDRGSC3.4
RGSC_v3.4126,331,073 - 6,331,372UniSTSRGSC3.4
RGSC_v3.1126,331,073 - 6,331,372RGD
Celera127,593,952 - 7,594,287UniSTS
RH 3.4 Map1241.17UniSTS
RH 3.4 Map1241.17RGD
RH 2.0 Map1293.5RGD
Cytogenetic Map12p11UniSTS
UniSTS:235374  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2125,824,828 - 5,825,045 (+)MAPPERmRatBN7.2
Rnor_6.0126,931,384 - 6,931,600NCBIRnor6.0
Rnor_5.0129,027,551 - 9,027,767UniSTSRnor5.0
RGSC_v3.4126,319,937 - 6,320,153UniSTSRGSC3.4
Celera127,582,817 - 7,583,033UniSTS
Cytogenetic Map12p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000001210   ⟹   ENSRNOP00000001210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl125,823,467 - 5,849,974 (-)Ensembl
Rnor_6.0 Ensembl126,929,978 - 6,956,984 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000072129   ⟹   ENSRNOP00000064429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl125,823,463 - 5,850,366 (-)Ensembl
Rnor_6.0 Ensembl126,930,018 - 6,956,914 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114472   ⟹   ENSRNOP00000090947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl125,823,359 - 5,849,974 (-)Ensembl
RefSeq Acc Id: NM_001105906   ⟹   NP_001099376
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81210,859,764 - 10,886,653 (-)NCBI
mRatBN7.2125,823,463 - 5,850,366 (-)NCBI
Rnor_6.0126,930,018 - 6,956,914 (-)NCBI
Rnor_5.0129,026,185 - 9,053,011 (-)NCBI
RGSC_v3.4126,318,581 - 6,345,858 (-)RGD
Celera127,581,451 - 7,608,343 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001198555   ⟹   NP_001185484
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81210,859,764 - 10,886,653 (-)NCBI
mRatBN7.2125,823,463 - 5,850,366 (-)NCBI
Rnor_6.0126,930,018 - 6,956,914 (-)NCBI
Rnor_5.0129,026,185 - 9,053,011 (-)NCBI
Celera127,581,451 - 7,608,343 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006248810   ⟹   XP_006248872
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81210,859,768 - 10,886,760 (-)NCBI
mRatBN7.2125,823,460 - 5,850,470 (-)NCBI
Rnor_6.0126,930,022 - 6,957,027 (-)NCBI
Rnor_5.0129,026,185 - 9,053,011 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063271116   ⟹   XP_063127186
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81210,859,768 - 10,886,761 (-)NCBI
RefSeq Acc Id: NP_001099376   ⟸   NM_001105906
- Peptide Label: isoform 2
- UniProtKB: D3ZTS4 (UniProtKB/TrEMBL),   A6K171 (UniProtKB/TrEMBL),   A0A8I6AFA0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001185484   ⟸   NM_001198555
- Peptide Label: isoform 1
- UniProtKB: M0R4X8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248872   ⟸   XM_006248810
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000001210   ⟸   ENSRNOT00000001210
Ensembl Acc Id: ENSRNOP00000064429   ⟸   ENSRNOT00000072129
Ensembl Acc Id: ENSRNOP00000090947   ⟸   ENSRNOT00000114472
RefSeq Acc Id: XP_063127186   ⟸   XM_063271116
- Peptide Label: isoform X1
- UniProtKB: M0R4X8 (UniProtKB/TrEMBL)
Protein Domains
USP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R4X8-F1-model_v2 AlphaFold M0R4X8 1-1069 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698392
Promoter ID:EPDNEW_R8916
Type:initiation region
Name:Uspl1_1
Description:ubiquitin specific peptidase like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0126,956,926 - 6,956,986EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310835 AgrOrtholog
BioCyc Gene G2FUF-20177 BioCyc
Ensembl Genes ENSRNOG00000000909 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001210.8 UniProtKB/TrEMBL
  ENSRNOT00000072129.3 UniProtKB/TrEMBL
  ENSRNOT00000114472.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine proteinases UniProtKB/TrEMBL
InterPro DUF4650 UniProtKB/TrEMBL
  Papain_like_cys_pep_sf UniProtKB/TrEMBL
  Peptidase_C98 UniProtKB/TrEMBL
  UCH/PAN2 UniProtKB/TrEMBL
  USPL1 UniProtKB/TrEMBL
KEGG Report rno:288447 UniProtKB/TrEMBL
NCBI Gene 288447 ENTREZGENE
PANTHER PTHR15294 UniProtKB/TrEMBL
  SUMO-SPECIFIC ISOPEPTIDASE USPL1 UniProtKB/TrEMBL
Pfam DUF4650 UniProtKB/TrEMBL
  Peptidase_C98 UniProtKB/TrEMBL
PhenoGen Uspl1 PhenoGen
PROSITE UCH_2_3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000909 RatGTEx
Superfamily-SCOP SSF54001 UniProtKB/TrEMBL
UniProt A0A8I6AFA0 ENTREZGENE, UniProtKB/TrEMBL
  A6K171 ENTREZGENE, UniProtKB/TrEMBL
  D3ZTS4 ENTREZGENE, UniProtKB/TrEMBL
  M0R4X8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-27 Uspl1  ubiquitin specific peptidase like 1  RGD1310835_predicted  hypothetical LOC288447 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1310835_predicted  hypothetical LOC288447 (predicted)  LOC288447_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC288447_predicted  hypothetical LOC288447 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL