Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Cdx4 (caudal type homeo box 4) Rattus norvegicus
Analyze
Symbol: Cdx4
Name: caudal type homeo box 4
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II proximal promoter sequence-specific DNA binding activity. Predicted to be involved in several processes, including anterior/posterior axis specification; labyrinthine layer development; and regulation of transcription by RNA polymerase II. Predicted to localize to the nucleus. Orthologous to human CDX4 (caudal type homeobox 4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; (+)-catechin (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: homeobox protein CDX-4; LOC302400; RGD1561529; similar to homeobox protein
Orthologs:
Homo sapiens (human) : CDX4 (caudal type homeobox 4)  HGNC  Alliance
Mus musculus (house mouse) : Cdx4 (caudal type homeobox 4)  MGI  Alliance
Pan paniscus (bonobo/pygmy chimpanzee) : CDX4 (caudal type homeobox 4)
Canis lupus familiaris (dog) : CDX4 (caudal type homeobox 4)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Cdx4 (caudal type homeobox 4)
Sus scrofa (pig) : CDX4 (caudal type homeobox 4)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X74,165,172 - 74,173,758 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX74,165,187 - 74,173,347 (+)Ensembl
Rnor_5.0X74,973,425 - 74,982,011 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X91,285,627 - 91,294,213 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX69,694,561 - 69,703,147 (+)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Cdx4
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1561529
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.