Nsdhl (NAD(P) dependent steroid dehydrogenase-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Nsdhl (NAD(P) dependent steroid dehydrogenase-like) Rattus norvegicus
Analyze
Symbol: Nsdhl
Name: NAD(P) dependent steroid dehydrogenase-like
RGD ID: 1359337
Description: Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to be involved in cholesterol metabolic process. Predicted to act upstream of or within hair follicle development; labyrinthine layer blood vessel development; and smoothened signaling pathway. Predicted to be located in lipid droplet. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in CHILD syndrome and CK syndrome. Orthologous to human NSDHL (NAD(P) dependent steroid dehydrogenase-like); PARTICIPATES IN alendronate pharmacodynamics pathway; cholesterol biosynthetic pathway; cholesterol ester storage disease pathway; INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC105618; sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X155,817,301 - 155,848,224 (+)NCBIGRCr8
mRatBN7.2X150,775,034 - 150,807,161 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX150,775,080 - 150,807,142 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX152,967,118 - 152,997,979 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X156,499,462 - 156,530,321 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X154,042,572 - 154,073,431 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X152,933,118 - 152,964,399 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX152,933,069 - 152,964,390 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01148,661,899 - 148,693,982 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X158,923,025 - 158,954,914 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X158,996,457 - 159,028,346 (+)NCBI
Celera1131,739,125 - 131,770,246 (+)NCBICelera
Cytogenetic MapXq37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-amino-2-deoxy-D-glucopyranose  (ISO)
22-Hydroxycholesterol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5-triiodo-L-thyronine  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-methylcholanthrene  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
7,12-dimethyltetraphene  (ISO)
acetamide  (EXP)
Acetyl tributyl citrate  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aldehydo-D-glucosamine  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (EXP)
apigenin  (EXP)
Archazolid B  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
beta-D-glucosamine  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
buspirone  (EXP)
butan-1-ol  (ISO)
Butylbenzyl phthalate  (EXP)
cannabidiol  (ISO)
carbon nanotube  (ISO)
clobetasol  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
Di-n-hexyl phthalate  (EXP)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
Dicyclohexyl phthalate  (EXP)
difenoconazole  (EXP)
diisobutyl phthalate  (EXP)
diisononyl phthalate  (EXP)
dipentyl phthalate  (EXP)
doxorubicin  (ISO)
epoxiconazole  (ISO)
erlotinib hydrochloride  (ISO)
ethyl methanesulfonate  (ISO)
fenarimol  (EXP)
fenofibrate  (ISO)
fluoranthene  (ISO)
fluoxetine  (ISO)
flusilazole  (ISO)
formaldehyde  (ISO)
fumonisin B1  (ISO)
hydralazine  (ISO)
inulin  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
ketoconazole  (EXP)
lead diacetate  (ISO)
leflunomide  (ISO)
luteolin  (EXP)
LY294002  (ISO)
methyl methanesulfonate  (ISO)
miconazole  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
NADP zwitterion  (ISO)
NADP(+)  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
O-methyleugenol  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
pravastatin  (EXP,ISO)
progesterone  (ISO)
propiconazole  (EXP)
pyrazinecarboxamide  (EXP)
rotenone  (EXP)
silver atom  (ISO)
silver(0)  (ISO)
simvastatin  (EXP)
sodium arsenite  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
tetracycline  (ISO)
thiram  (ISO)
trimellitic anhydride  (ISO)
Triptolide  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
Yessotoxin  (ISO)
zaragozic acid A  (EXP,ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Placental defects are associated with male lethality in bare patches and striated embryos deficient in the NAD(P)H Steroid Dehydrogenase-like (NSDHL) Enzyme. Caldas H, etal., Mol Genet Metab 2005 Jan;84(1):48-60.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Disorders of cholesterol biosynthesis: prototypic metabolic malformation syndromes. Herman GE Hum Mol Genet. 2003 Apr 1;12 Spec No 1:R75-88.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. Online Mendelian Inheritance in Man, OMIM (TM). Online Mendelian Inheritance in Man, OMIM (TM).
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Comprehensive gene review and curation RGD comprehensive gene curation
14. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
15. Defects of cholesterol biosynthesis. Waterham HR FEBS Lett. 2006 Oct 9;580(23):5442-9. Epub 2006 Jul 20.
Additional References at PubMed
PMID:4435359   PMID:10369263   PMID:14741744   PMID:17028112   PMID:21498505  


Genomics

Comparative Map Data
Nsdhl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X155,817,301 - 155,848,224 (+)NCBIGRCr8
mRatBN7.2X150,775,034 - 150,807,161 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX150,775,080 - 150,807,142 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX152,967,118 - 152,997,979 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X156,499,462 - 156,530,321 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X154,042,572 - 154,073,431 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X152,933,118 - 152,964,399 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX152,933,069 - 152,964,390 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01148,661,899 - 148,693,982 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X158,923,025 - 158,954,914 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X158,996,457 - 159,028,346 (+)NCBI
Celera1131,739,125 - 131,770,246 (+)NCBICelera
Cytogenetic MapXq37NCBI
NSDHL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X152,831,063 - 152,869,729 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX152,830,967 - 152,869,729 (+)EnsemblGRCh38hg38GRCh38
GRCh37X151,999,607 - 152,038,273 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X151,750,167 - 151,788,563 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X151,670,078 - 151,708,475NCBI
CeleraX152,333,895 - 152,372,297 (+)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX140,816,165 - 140,839,247 (+)NCBIHuRef
CHM1_1X151,874,102 - 151,912,500 (+)NCBICHM1_1
T2T-CHM13v2.0X151,097,547 - 151,136,220 (+)NCBIT2T-CHM13v2.0
Nsdhl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X71,962,127 - 72,002,134 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX71,962,163 - 72,002,120 (+)EnsemblGRCm39 Ensembl
GRCm38X72,918,521 - 72,958,528 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX72,918,557 - 72,958,514 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X70,163,860 - 70,203,867 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X69,171,241 - 69,211,248 (+)NCBIMGSCv36mm8
CeleraX63,853,687 - 63,881,911 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.29NCBI
Nsdhl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554988,135,897 - 8,161,775 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554988,135,897 - 8,161,775 (+)NCBIChiLan1.0ChiLan1.0
NSDHL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X152,895,076 - 152,933,543 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X152,898,679 - 152,937,146 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X142,405,340 - 142,443,723 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X152,324,553 - 152,362,931 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX152,324,553 - 152,362,931 (+)Ensemblpanpan1.1panPan2
NSDHL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X120,720,118 - 120,754,573 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX120,720,183 - 120,754,143 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX106,088,695 - 106,122,830 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X122,944,801 - 122,978,966 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX122,944,858 - 122,978,974 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X119,661,018 - 119,695,117 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X122,151,713 - 122,185,683 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X122,026,748 - 122,060,840 (+)NCBIUU_Cfam_GSD_1.0
Nsdhl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X117,982,486 - 118,009,864 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936714246,551 - 273,912 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936714246,574 - 273,930 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NSDHL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX123,906,199 - 123,929,117 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X123,906,130 - 123,921,935 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X141,376,781 - 141,391,919 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NSDHL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X127,342,788 - 127,389,117 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX127,342,850 - 127,390,536 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606565,176,040 - 65,215,613 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nsdhl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248834,039,898 - 4,066,123 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248834,039,876 - 4,062,309 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nsdhl
25 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:439
Count of miRNA genes:217
Interacting mature miRNAs:250
Transcripts:ENSRNOT00000022985
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000091154   ⟹   ENSRNOP00000069662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX150,775,080 - 150,807,142 (+)Ensembl
Rnor_6.0 EnsemblX152,933,069 - 152,964,390 (+)Ensembl
RefSeq Acc Id: NM_001009399   ⟹   NP_001009399
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X155,817,360 - 155,848,215 (+)NCBI
mRatBN7.2X150,775,092 - 150,805,947 (+)NCBI
Rnor_6.0X152,933,126 - 152,963,190 (+)NCBI
Rnor_5.01148,661,899 - 148,693,982 (+)NCBI
RGSC_v3.4X158,923,025 - 158,954,914 (+)RGD
Celera1131,739,125 - 131,770,246 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017602022   ⟹   XP_017457511
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X155,817,301 - 155,848,224 (+)NCBI
mRatBN7.2X150,775,034 - 150,807,161 (+)NCBI
Rnor_6.0X152,933,118 - 152,964,399 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039099683   ⟹   XP_038955611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X155,817,321 - 155,848,224 (+)NCBI
mRatBN7.2X150,775,049 - 150,807,161 (+)NCBI
RefSeq Acc Id: XM_063279969   ⟹   XP_063136039
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X155,819,335 - 155,848,224 (+)NCBI
RefSeq Acc Id: NP_001009399   ⟸   NM_001009399
- UniProtKB: Q5PPL3 (UniProtKB/Swiss-Prot),   A6KSY6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457511   ⟸   XM_017602022
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000069662   ⟸   ENSRNOT00000091154
RefSeq Acc Id: XP_038955611   ⟸   XM_039099683
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063136039   ⟸   XM_063279969
- Peptide Label: isoform X1
- UniProtKB: Q5PPL3 (UniProtKB/Swiss-Prot),   A6KSY6 (UniProtKB/TrEMBL)
Protein Domains
3-beta hydroxysteroid dehydrogenase/isomerase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5PPL3-F1-model_v2 AlphaFold Q5PPL3 1-362 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13702030
Promoter ID:EPDNEW_R12553
Type:multiple initiation site
Name:Nsdhl_1
Description:NAD dependent steroid dehydrogenase-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X152,933,146 - 152,933,206EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359337 AgrOrtholog
BioCyc Gene G2FUF-692 BioCyc
Ensembl Genes ENSRNOG00000057814 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00055023928 UniProtKB/Swiss-Prot
  ENSRNOG00060019809 UniProtKB/Swiss-Prot
  ENSRNOG00065014412 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000091154.2 UniProtKB/Swiss-Prot
  ENSRNOT00055041075 UniProtKB/Swiss-Prot
  ENSRNOT00060034230 UniProtKB/Swiss-Prot
  ENSRNOT00065023803 UniProtKB/Swiss-Prot
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7317527 IMAGE-MGC_LOAD
InterPro 3Beta_OHSteriod_DH/Estase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lipid_A_modif_metabolic_enz UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:309262 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:105618 IMAGE-MGC_LOAD
NCBI Gene 309262 ENTREZGENE
PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EPIMERASE DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 3Beta_HSD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nsdhl PhenoGen
RatGTEx ENSRNOG00000057814 RatGTEx
  ENSRNOG00055023928 RatGTEx
  ENSRNOG00060019809 RatGTEx
  ENSRNOG00065014412 RatGTEx
Superfamily-SCOP NAD(P)-binding Rossmann-fold domains UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A6KSY6 ENTREZGENE, UniProtKB/TrEMBL
  NSDHL_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Nsdhl  NAD(P) dependent steroid dehydrogenase-like      Symbol and Name status set to approved 1299863 APPROVED
2005-07-29 Nsdhl  NAD(P) dependent steroid dehydrogenase-like      Symbol and Name status set to provisional 70820 PROVISIONAL