Kidins220 (kinase D-interacting substrate 220) - Rat Genome Database

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Gene: Kidins220 (kinase D-interacting substrate 220) Rattus norvegicus
Analyze
Symbol: Kidins220
Name: kinase D-interacting substrate 220
RGD ID: 619949
Description: Enables PDZ domain binding activity; protein kinase binding activity; and protein kinase regulator activity. Involved in nerve growth factor signaling pathway and positive regulation of neuron projection development. Located in late endosome. Part of protein-containing complex. Orthologous to human KIDINS220 (kinase D interacting substrate 220); PARTICIPATES IN neurotrophic factor signaling pathway; INTERACTS WITH 1,3-dinitrobenzene; 2,2',4,4'-Tetrabromodiphenyl ether; benzene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: ankyrin repeat-rich membrane spanning protein; ankyrin repeat-rich membrane-spanning protein; ARMS; kinase D-interacting substance 220; kinase D-interacting substance of 220 kDa; kinase D-interacting substrate of 220 kDa
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2641,618,207 - 41,706,990 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl641,618,294 - 41,703,256 (+)Ensembl
Rnor_6.0644,225,142 - 44,322,938 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl644,225,233 - 44,322,938 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0652,955,540 - 53,048,254 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4642,649,878 - 42,740,157 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1642,653,003 - 42,743,283 (+)NCBI
Celera640,897,624 - 40,982,023 (+)NCBICelera
Cytogenetic Map6q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:15096499   PMID:15167895   PMID:15939763   PMID:17079733   PMID:19449316   PMID:19759287   PMID:19946888   PMID:20519585   PMID:20680483   PMID:20936698   PMID:20943655   PMID:21381019  
PMID:22609016   PMID:26083449   PMID:26966186   PMID:27005418   PMID:31296845  


Genomics

Comparative Map Data
Kidins220
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2641,618,207 - 41,706,990 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl641,618,294 - 41,703,256 (+)Ensembl
Rnor_6.0644,225,142 - 44,322,938 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl644,225,233 - 44,322,938 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0652,955,540 - 53,048,254 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4642,649,878 - 42,740,157 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1642,653,003 - 42,743,283 (+)NCBI
Celera640,897,624 - 40,982,023 (+)NCBICelera
Cytogenetic Map6q16NCBI
KIDINS220
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl28,721,081 - 8,837,630 (-)EnsemblGRCh38hg38GRCh38
GRCh3828,721,081 - 8,837,613 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3728,861,211 - 8,977,743 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3628,786,511 - 8,895,181 (-)NCBINCBI36hg18NCBI36
Build 3428,819,657 - 8,928,328NCBI
Celera28,783,597 - 8,892,394 (-)NCBI
Cytogenetic Map2p25.1NCBI
HuRef28,715,174 - 8,823,911 (-)NCBIHuRef
CHM1_128,798,365 - 8,907,169 (-)NCBICHM1_1
Kidins220
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391225,024,902 - 25,113,151 (+)NCBIGRCm39mm39
GRCm39 Ensembl1225,024,924 - 25,113,151 (+)Ensembl
GRCm381224,974,903 - 25,063,152 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1224,974,925 - 25,063,152 (+)EnsemblGRCm38mm10GRCm38
MGSCv371225,659,797 - 25,744,562 (+)NCBIGRCm37mm9NCBIm37
MGSCv361225,564,008 - 25,651,393 (+)NCBImm8
MGSCv361219,042,902 - 19,131,600 (+)NCBImm8
Celera1226,429,007 - 26,513,715 (+)NCBICelera
Cytogenetic Map12A1.3NCBI
Kidins220
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955487782,683 - 862,079 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955487782,683 - 862,079 (+)NCBIChiLan1.0ChiLan1.0
KIDINS220
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A8,894,686 - 9,003,320 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A8,892,960 - 8,992,777 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A8,720,780 - 8,837,136 (-)NCBIMhudiblu_PPA_v0panPan3
KIDINS220
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1175,983,208 - 6,077,609 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl175,982,938 - 6,071,165 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha175,902,344 - 6,006,463 (-)NCBI
ROS_Cfam_1.0176,084,932 - 6,177,119 (-)NCBI
UMICH_Zoey_3.1175,965,863 - 6,069,979 (-)NCBI
UNSW_CanFamBas_1.0175,967,448 - 6,071,271 (-)NCBI
UU_Cfam_GSD_1.0175,981,580 - 6,085,696 (-)NCBI
Kidins220
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629250,502,754 - 50,613,111 (-)NCBI
SpeTri2.0NW_0049365325,270,338 - 5,368,160 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIDINS220
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3127,382,603 - 127,474,276 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13127,382,587 - 127,477,753 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23135,751,131 - 135,775,250 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KIDINS220
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11498,806,935 - 98,920,706 (+)NCBI
ChlSab1.1 Ensembl1498,806,939 - 98,915,437 (+)Ensembl
Vero_WHO_p1.0NW_02366604513,406,684 - 13,523,708 (-)NCBI
Kidins220
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248462,184,306 - 2,267,021 (+)NCBI

Position Markers
D6Rat32  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2641,649,726 - 41,649,891 (+)MAPPERmRatBN7.2
Rnor_6.0644,256,005 - 44,256,169NCBIRnor6.0
Rnor_5.0652,983,512 - 52,983,676UniSTSRnor5.0
RGSC_v3.4642,685,660 - 42,685,825RGDRGSC3.4
RGSC_v3.4642,685,661 - 42,685,825UniSTSRGSC3.4
RGSC_v3.1642,688,787 - 42,688,951RGD
Celera640,928,921 - 40,929,085UniSTS
RH 3.4 Map6232.0RGD
RH 3.4 Map6232.0UniSTS
RH 2.0 Map6383.8RGD
SHRSP x BN Map633.0298RGD
Cytogenetic Map6q16UniSTS
RH131522  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2641,702,886 - 41,703,074 (+)MAPPERmRatBN7.2
Rnor_6.0644,322,569 - 44,322,756NCBIRnor6.0
Rnor_5.0653,047,885 - 53,048,072UniSTSRnor5.0
RGSC_v3.4642,739,788 - 42,739,975UniSTSRGSC3.4
Celera640,981,654 - 40,981,841UniSTS
RH 3.4 Map6237.0UniSTS
Cytogenetic Map6q16UniSTS
AW528400  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2641,628,345 - 41,628,547 (+)MAPPERmRatBN7.2
Rnor_6.0644,235,285 - 44,235,486NCBIRnor6.0
Rnor_5.0652,965,677 - 52,965,878UniSTSRnor5.0
RGSC_v3.4642,661,447 - 42,661,648UniSTSRGSC3.4
Celera640,907,669 - 40,907,870UniSTS
RH 3.4 Map6231.8UniSTS
Cytogenetic Map6q16UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63569161857730540Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:754
Count of miRNA genes:274
Interacting mature miRNAs:345
Transcripts:ENSRNOT00000005858, ENSRNOT00000066593
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 42 52 36 19 36 8 9 74 35 38 11 8
Low 1 5 5 5 2 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF239045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF313464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KR081254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KR081255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KR081256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KR081257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KR081258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KR081259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000005858   ⟹   ENSRNOP00000005858
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl641,618,294 - 41,703,256 (+)Ensembl
Rnor_6.0 Ensembl644,230,985 - 44,321,203 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000066593   ⟹   ENSRNOP00000063889
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl641,618,294 - 41,703,256 (+)Ensembl
Rnor_6.0 Ensembl644,225,233 - 44,322,938 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098052   ⟹   ENSRNOP00000085209
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl641,618,294 - 41,703,256 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099008   ⟹   ENSRNOP00000091847
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl641,618,294 - 41,703,256 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099104   ⟹   ENSRNOP00000082934
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl641,618,294 - 41,703,256 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106831   ⟹   ENSRNOP00000093485
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl641,618,294 - 41,703,256 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119137   ⟹   ENSRNOP00000092341
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl641,618,294 - 41,703,256 (+)Ensembl
RefSeq Acc Id: NM_053795   ⟹   NP_446247
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,294 - 41,703,256 (+)NCBI
Rnor_6.0644,225,233 - 44,322,938 (+)NCBI
Rnor_5.0652,955,540 - 53,048,254 (+)NCBI
RGSC_v3.4642,649,878 - 42,740,157 (+)RGD
Celera640,897,624 - 40,982,023 (+)RGD
Sequence:
RefSeq Acc Id: XM_006239925   ⟹   XP_006239987
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,207 - 41,703,256 (+)NCBI
Rnor_6.0644,225,142 - 44,322,938 (+)NCBI
Rnor_5.0652,955,540 - 53,048,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239926   ⟹   XP_006239988
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,207 - 41,703,256 (+)NCBI
Rnor_6.0644,234,813 - 44,322,938 (+)NCBI
Rnor_5.0652,955,540 - 53,048,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239927   ⟹   XP_006239989
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,208 - 41,703,256 (+)NCBI
Rnor_6.0644,225,142 - 44,322,938 (+)NCBI
Rnor_5.0652,955,540 - 53,048,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239928   ⟹   XP_006239990
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,294 - 41,701,521 (+)NCBI
Rnor_6.0644,225,142 - 44,322,938 (+)NCBI
Rnor_5.0652,955,540 - 53,048,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239929   ⟹   XP_006239991
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,207 - 41,703,256 (+)NCBI
Rnor_6.0644,234,813 - 44,322,938 (+)NCBI
Rnor_5.0652,955,540 - 53,048,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239931   ⟹   XP_006239993
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,207 - 41,703,256 (+)NCBI
Rnor_6.0644,234,813 - 44,322,938 (+)NCBI
Rnor_5.0652,955,540 - 53,048,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239932   ⟹   XP_006239994
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,207 - 41,703,256 (+)NCBI
Rnor_6.0644,234,813 - 44,322,938 (+)NCBI
Rnor_5.0652,955,540 - 53,048,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239937   ⟹   XP_006239999
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,208 - 41,701,521 (+)NCBI
Rnor_6.0644,225,142 - 44,322,938 (+)NCBI
Rnor_5.0652,955,540 - 53,048,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593977   ⟹   XP_017449466
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,624 - 41,703,256 (+)NCBI
Rnor_6.0644,225,472 - 44,322,938 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593978   ⟹   XP_017449467
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,207 - 41,703,256 (+)NCBI
Rnor_6.0644,234,813 - 44,322,938 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593979   ⟹   XP_017449468
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,294 - 41,703,193 (+)NCBI
Rnor_6.0644,225,142 - 44,322,938 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593980   ⟹   XP_017449469
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,294 - 41,703,193 (+)NCBI
Rnor_6.0644,225,142 - 44,322,938 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593983   ⟹   XP_017449472
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,294 - 41,703,193 (+)NCBI
Rnor_6.0644,225,142 - 44,322,938 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039111611   ⟹   XP_038967539
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,207 - 41,703,256 (+)NCBI
RefSeq Acc Id: XM_039111612   ⟹   XP_038967540
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,207 - 41,703,256 (+)NCBI
RefSeq Acc Id: XM_039111614   ⟹   XP_038967542
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,207 - 41,703,256 (+)NCBI
RefSeq Acc Id: XM_039111615   ⟹   XP_038967543
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,207 - 41,703,256 (+)NCBI
RefSeq Acc Id: XM_039111616   ⟹   XP_038967544
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,207 - 41,703,256 (+)NCBI
RefSeq Acc Id: XM_039111617   ⟹   XP_038967545
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,208 - 41,701,521 (+)NCBI
RefSeq Acc Id: XM_039111618   ⟹   XP_038967546
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,207 - 41,703,256 (+)NCBI
RefSeq Acc Id: XM_039111619   ⟹   XP_038967547
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,207 - 41,703,256 (+)NCBI
RefSeq Acc Id: XM_039111620   ⟹   XP_038967548
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,208 - 41,703,256 (+)NCBI
RefSeq Acc Id: XM_039111621   ⟹   XP_038967549
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,208 - 41,701,521 (+)NCBI
RefSeq Acc Id: XM_039111622   ⟹   XP_038967550
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,207 - 41,706,990 (+)NCBI
RefSeq Acc Id: XM_039111623   ⟹   XP_038967551
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2641,618,207 - 41,706,990 (+)NCBI
Protein Sequences
Protein RefSeqs NP_446247 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239987 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239988 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239989 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239990 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239991 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239993 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239994 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239999 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449466 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449467 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449468 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449469 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449472 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967539 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967540 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967542 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967543 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967544 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967545 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967546 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967547 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967548 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967549 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967550 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967551 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG34167 (Get FASTA)   NCBI Sequence Viewer  
  AAG35185 (Get FASTA)   NCBI Sequence Viewer  
  AKP95858 (Get FASTA)   NCBI Sequence Viewer  
  AKP95859 (Get FASTA)   NCBI Sequence Viewer  
  AKP95860 (Get FASTA)   NCBI Sequence Viewer  
  AKP95861 (Get FASTA)   NCBI Sequence Viewer  
  AKP95862 (Get FASTA)   NCBI Sequence Viewer  
  AKP95863 (Get FASTA)   NCBI Sequence Viewer  
  EDM03192 (Get FASTA)   NCBI Sequence Viewer  
  EDM03193 (Get FASTA)   NCBI Sequence Viewer  
  EDM03194 (Get FASTA)   NCBI Sequence Viewer  
  EDM03195 (Get FASTA)   NCBI Sequence Viewer  
  EDM03196 (Get FASTA)   NCBI Sequence Viewer  
  Q9EQG6 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_446247   ⟸   NM_053795
- Sequence:
RefSeq Acc Id: XP_006239987   ⟸   XM_006239925
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006239999   ⟸   XM_006239937
- Peptide Label: isoform X21
- Sequence:
RefSeq Acc Id: XP_006239989   ⟸   XM_006239927
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006239990   ⟸   XM_006239928
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006239988   ⟸   XM_006239926
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006239991   ⟸   XM_006239929
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006239993   ⟸   XM_006239931
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006239994   ⟸   XM_006239932
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_017449468   ⟸   XM_017593979
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_017449469   ⟸   XM_017593980
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_017449472   ⟸   XM_017593983
- Peptide Label: isoform X22
- Sequence:
RefSeq Acc Id: XP_017449466   ⟸   XM_017593977
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017449467   ⟸   XM_017593978
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: ENSRNOP00000063889   ⟸   ENSRNOT00000066593
RefSeq Acc Id: ENSRNOP00000005858   ⟸   ENSRNOT00000005858
RefSeq Acc Id: XP_038967550   ⟸   XM_039111622
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038967551   ⟸   XM_039111623
- Peptide Label: isoform X24
RefSeq Acc Id: XP_038967539   ⟸   XM_039111611
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038967542   ⟸   XM_039111614
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038967543   ⟸   XM_039111615
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038967544   ⟸   XM_039111616
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038967546   ⟸   XM_039111618
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038967547   ⟸   XM_039111619
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038967540   ⟸   XM_039111612
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038967548   ⟸   XM_039111620
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038967549   ⟸   XM_039111621
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038967545   ⟸   XM_039111617
- Peptide Label: isoform X15
RefSeq Acc Id: ENSRNOP00000082934   ⟸   ENSRNOT00000099104
RefSeq Acc Id: ENSRNOP00000085209   ⟸   ENSRNOT00000098052
RefSeq Acc Id: ENSRNOP00000091847   ⟸   ENSRNOT00000099008
RefSeq Acc Id: ENSRNOP00000093485   ⟸   ENSRNOT00000106831
RefSeq Acc Id: ENSRNOP00000092341   ⟸   ENSRNOT00000119137
Protein Domains
ANK_REP_REGION   KAP NTPase

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694525
Promoter ID:EPDNEW_R5048
Type:multiple initiation site
Name:Kidins220_1
Description:kinase D-interacting substrate 220
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0644,225,156 - 44,225,216EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619949 AgrOrtholog
Ensembl Genes ENSRNOG00000023176 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000005858 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000063889 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005858 UniProtKB/TrEMBL
  ENSRNOT00000066593 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KAP_P-loop UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:116478 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 116478 ENTREZGENE
Pfam Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KAP_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kidins220 PhenoGen
PRINTS ANKYRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0H4SMZ8_RAT UniProtKB/TrEMBL
  A0A0H4SN51_RAT UniProtKB/TrEMBL
  A0A0H4SQ65_RAT UniProtKB/TrEMBL
  A0A0H4SRI2_RAT UniProtKB/TrEMBL
  A0A0H4SRI7_RAT UniProtKB/TrEMBL
  A0A0H4T4D0_RAT UniProtKB/TrEMBL
  D3ZWB2_RAT UniProtKB/TrEMBL
  D4ABK9_RAT UniProtKB/TrEMBL
  KDIS_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q9ERD4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-02-04 Kidins220  kinase D-interacting substrate 220  Kidins220  kinase D-interacting substrate of 220 kDa  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2007-09-11 Ube1x  kinase D-interacting substrate of 220 kDa  Kidins220  kinase D-interacting substance 220  Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2005-01-20 Kidins220  kinase D-interacting substance 220    kinase D-interacting substance of 220 kDa  Name updated 1299863 APPROVED
2002-08-07 Kidins220  kinase D-interacting substance of 220 kDa      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_domains contains 11 ankyrin repeats and four transmembrane domains 633109
gene_expression expressed in brain and neuroendocrine cells 633109