Mir106b (microRNA 106b) - Rat Genome Database

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Gene: Mir106b (microRNA 106b) Rattus norvegicus
Analyze
Symbol: Mir106b
Name: microRNA 106b
RGD ID: 2325388
Description: Predicted to enable mRNA 3'-UTR binding activity and mRNA base-pairing translational repressor activity. Predicted to be involved in cellular response to amyloid-beta; miRNA-mediated post-transcriptional gene silencing; and negative regulation of angiogenesis. Predicted to act upstream of or within several processes, including cellular response to forskolin; long-term synaptic potentiation; and negative regulation of B cell apoptotic process. Predicted to be located in extracellular exosome. Predicted to be part of RISC complex. Biomarker of hepatocellular carcinoma. Orthologous to human MIR106B (microRNA 106b); INTERACTS WITH 2-acetamidofluorene; 2-methoxyethanol; atrazine.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: rno-mir-106b
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81222,157,053 - 22,157,134 (-)NCBIGRCr8
mRatBN7.21217,043,344 - 17,043,425 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1217,043,344 - 17,043,425 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1217,866,725 - 17,866,806 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,490,469 - 18,490,550 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01217,543,875 - 17,543,956 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01219,307,752 - 19,307,833 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,307,752 - 19,307,833 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01221,365,382 - 21,365,463 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1218,973,514 - 18,973,595 (-)NCBICelera
Cytogenetic Map12q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mir106bRatChemical and Drug Induced Liver Injury  IDA 15042854DNA:hypermethylation:promoterRGD 
Mir106bRatChemical and Drug Induced Liver Injury  IEP 15042854miRNA:decreased expression:liver (rat)RGD 
Mir106bRatChronic Hepatitis B severityIEP 15042853associated with hepatocellular carcinoma and miRNA:increased expression:liver (human)RGD 
Mir106bRatcolorectal cancer  ISOMIR106B (Homo sapiens)9068941miRNA:increased expression:colorectum (human)RGDPMID:23322774 and REF_RGD_ID:153002793
Mir106bRathepatocellular carcinoma  IEP 15042875miRNA:increased expression:plasma (human)RGD 
Mir106bRathepatocellular carcinoma disease_progressionIEP 15042876miRNA:increased expression:serum (human)RGD 
Mir106bRathepatocellular carcinoma  IEP 15042874miRNA:decreased expression:liver (human)RGD 
Mir106bRathepatocellular carcinoma severityIEP 15042877miRNA:increased expression:liver (human)RGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mir106bRatpleomorphic xanthoastrocytoma  ISOMIR106B (Homo sapiens)8554872ClinVar Annotator: match by term: Pleomorphic xanthoastrocytomaClinVarPMID:28299358
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mir106bRatautistic disorder  ISOMIR106B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20374639
Mir106bRatColorectal Neoplasms  ISOMIR106B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:22510560
Mir106bRatcongestive heart failure  ISOMIR106B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:36071497
Mir106bRatosteosarcoma  ISOMIR106B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:22510560

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mir106bRat17beta-estradiol multiple interactionsISOMIR106B (Homo sapiens)6480464Estradiol inhibits the reaction [amyloid beta-protein (1-42) results in decreased expression of MIR106B mRNA] and Estradiol inhibits the reaction [APP protein results in decreased expression of MIR106B mRNA]CTDPMID:34318539
Mir106bRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOMIR106B (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of MIR106B mRNACTDPMID:30096437
Mir106bRat2-acetamidofluorene increases expressionEXP 64804642-Acetylaminofluorene results in increased expression of MIR106B mRNACTDPMID:19167416
Mir106bRat2-methoxyethanol decreases expressionEXP 6480464methyl cellosolve results in decreased expression of MIR106B mRNACTDPMID:22008535
Mir106bRataldehydo-D-glucose multiple interactionsISOMIR106B (Homo sapiens)6480464HAGLR protein inhibits the reaction [MIR106B inhibits the reaction [Glucose results in decreased phosphorylation of AKT1 protein]] more ...CTDPMID:38088496
Mir106bRatamphotericin B increases expressionISOMIR106B (Homo sapiens)6480464Amphotericin B analog results in increased expression of MIR106BCTDPMID:28534445
Mir106bRatarsane multiple interactionsISOMir106b (Mus musculus)6480464[sodium arsenite results in increased abundance of Arsenic] which results in increased expression of MIR106B mRNACTDPMID:34952004
Mir106bRatarsenic atom multiple interactionsISOMir106b (Mus musculus)6480464[sodium arsenite results in increased abundance of Arsenic] which results in increased expression of MIR106B mRNACTDPMID:34952004
Mir106bRatarsenite(3-) increases expressionISOMIR106B (Homo sapiens)6480464arsenite results in increased expression of MIR106B mRNACTDPMID:22728250
Mir106bRatatrazine increases expressionEXP 6480464Atrazine results in increased expression of MIR106B mRNACTDPMID:31185338
Mir106bRatbenzo[a]pyrene decreases methylationISOMir106b (Mus musculus)6480464Benzo(a)pyrene results in decreased methylation of MIR106B promoterCTDPMID:27901495
Mir106bRatbis(2-chloroethyl) sulfide decreases expressionISOMir106b (Mus musculus)6480464Mustard Gas results in decreased expression of MIR106B mRNACTDPMID:26456178
Mir106bRatbis(2-ethylhexyl) phthalate decreases expressionEXP 6480464Diethylhexyl Phthalate results in decreased expression of MIR106B mRNACTDPMID:28192093
Mir106bRatbis(2-ethylhexyl) phthalate increases expressionISOMir106b (Mus musculus)6480464Diethylhexyl Phthalate results in increased expression of MIR106BCTDPMID:32642447
Mir106bRatbis(2-ethylhexyl) phthalate decreases expressionISOMir106b (Mus musculus)6480464Diethylhexyl Phthalate results in decreased expression of MIR106BCTDPMID:32642447
Mir106bRatbis(2-ethylhexyl) phthalate multiple interactionsISOMIR106B (Homo sapiens)6480464[Diethylhexyl Phthalate results in increased abundance of mono-(2-ethylhexyl)phthalate] which affects the expression of MIR106BCTDPMID:30481674
Mir106bRatbisphenol A increases expressionISOMIR106B (Homo sapiens)6480464bisphenol A results in increased expression of MIR106B mRNACTDPMID:20417706
Mir106bRatbleomycin A2 affects expressionEXP 6480464Bleomycin affects the expression of MIR106B mRNACTDPMID:25933445
Mir106bRatcadmium atom multiple interactionsEXP 6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of MIR106B mRNACTDPMID:33652105
Mir106bRatcadmium dichloride multiple interactionsEXP 6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of MIR106B mRNACTDPMID:33652105

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Biological Process
1 to 19 of 19 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mir106bRatB cell apoptotic process acts_upstream_ofISOMir106b (Mus musculus)1624291MGI:2676844 more ...RGDPMID:18329372
Mir106bRatcellular response to amyloid-beta involved_inISOMIR106B (Homo sapiens)1624291 PMID:27520374RGDPMID:27520374
Mir106bRatin utero embryonic development acts_upstream_of_or_withinISOMir106b (Mus musculus)1624291MGI:2676844 more ...RGDPMID:18329372
Mir106bRatlong-term synaptic potentiation acts_upstream_of_or_withinISOMir106b (Mus musculus)1624291 PMID:25858512RGDPMID:25858512
Mir106bRatmiRNA-mediated gene silencing by inhibition of translation involved_inISOMIR106B (Homo sapiens)1624291 PMID:19153141RGDPMID:19153141
Mir106bRatmiRNA-mediated gene silencing by mRNA destabilization involved_inISOMIR106B (Homo sapiens)1624291 PMID:27325313RGDPMID:27325313
Mir106bRatmiRNA-mediated post-transcriptional gene silencing involved_inISOMIR106B (Homo sapiens)1624291 PMID:17205120 more ...RGDPMID:17205120 more ...
Mir106bRatnegative regulation of angiogenesis involved_inISOMIR106B (Homo sapiens)1624291 PMID:26956882RGDPMID:26956882
Mir106bRatnegative regulation of apoptotic process acts_upstream_of_or_withinISOMir106b (Mus musculus)1624291MGI:2676844 more ...RGDPMID:18329372
Mir106bRatnegative regulation of B cell apoptotic process acts_upstream_of_or_withinISOMir106b (Mus musculus)1624291MGI:2676844 more ...RGDPMID:18329372
Mir106bRatnegative regulation of gene expression acts_upstream_ofISOMIR106B (Homo sapiens)1624291 PMID:22556343RGDPMID:22556343
Mir106bRatnegative regulation of gene expression acts_upstream_of_or_withinISOMIR106B (Homo sapiens)1624291 PMID:22556343RGDPMID:22556343
Mir106bRatnegative regulation of interleukin-8 production acts_upstream_ofISOMIR106B (Homo sapiens)1624291 PMID:22556343RGDPMID:22556343
Mir106bRatnegative regulation of interleukin-8 production involved_inISOMIR106B (Homo sapiens)1624291 PMID:22556343RGDPMID:22556343
Mir106bRatregulation of endothelial cell apoptotic process NOT|involved_inISOMIR106B (Homo sapiens)1624291 PMID:26956882RGDPMID:26956882
Mir106bRatresponse to bacterium acts_upstream_of_or_withinISOMir106b (Mus musculus)1624291 PMID:24205035RGDPMID:24205035
Mir106bRatresponse to wounding acts_upstream_of_or_withinISOMir106b (Mus musculus)1624291 PMID:24205035RGDPMID:24205035
Mir106bRatsensory perception of sound acts_upstream_of_or_withinISOMir106b (Mus musculus)1624291 PMID:23646144RGDPMID:23646144
Mir106bRatWnt signaling pathway acts_upstream_of_or_withinISOMir106b (Mus musculus)1624291 PMID:16682203RGDPMID:16682203
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Cellular Component

  

Molecular Function

  


#
Reference Title
Reference Citation
1. Crosstalk between liver-related microRNAs and Wnt/β-catenin pathway in hepatocellular carcinoma patients. Ashmawy AM, etal., Arab J Gastroenterol. 2017 Sep;18(3):144-150. doi: 10.1016/j.ajg.2017.09.001. Epub 2017 Sep 27.
2. Plasma microRNA might as a potential biomarker for hepatocellular carcinoma and chronic liver disease screening. Jiang L, etal., Tumour Biol. 2015 Sep;36(9):7167-74. doi: 10.1007/s13277-015-3446-7. Epub 2015 Apr 17.
3. Involvement of methylation of MicroRNA-122, -125b and -106b in regulation of Cyclin G1, CAT-1 and STAT3 target genes in isoniazid-induced liver injury. Li Y, etal., BMC Pharmacol Toxicol. 2018 Mar 20;19(1):11. doi: 10.1186/s40360-018-0201-x.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Study on the value of serum miR-106b for the early diagnosis of hepatocellular carcinoma. Shi BM, etal., World J Gastroenterol. 2017 May 28;23(20):3713-3720. doi: 10.3748/wjg.v23.i20.3713.
6. miR-106b promotes cancer progression in hepatitis B virus-associated hepatocellular carcinoma. Yen CS, etal., World J Gastroenterol. 2016 Jun 14;22(22):5183-92. doi: 10.3748/wjg.v22.i22.5183.
7. MicroRNA-106b-5p promotes hepatocellular carcinoma development via modulating FOG2. Yu LX, etal., Onco Targets Ther. 2019 Jul 15;12:5639-5647. doi: 10.2147/OTT.S203382. eCollection 2019.
PMID:16381832   PMID:16682203   PMID:16766679   PMID:17604727   PMID:18329372   PMID:20403161   PMID:21993888   PMID:23185045   PMID:23646144   PMID:24205035   PMID:25858512   PMID:28750453  
PMID:33808213  



Mir106b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81222,157,053 - 22,157,134 (-)NCBIGRCr8
mRatBN7.21217,043,344 - 17,043,425 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1217,043,344 - 17,043,425 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1217,866,725 - 17,866,806 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,490,469 - 18,490,550 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01217,543,875 - 17,543,956 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01219,307,752 - 19,307,833 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,307,752 - 19,307,833 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01221,365,382 - 21,365,463 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1218,973,514 - 18,973,595 (-)NCBICelera
Cytogenetic Map12q11NCBI
MIR106B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387100,093,993 - 100,094,074 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7100,093,993 - 100,094,074 (-)EnsemblGRCh38hg38GRCh38
GRCh37799,691,616 - 99,691,697 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36799,529,551 - 99,529,632 (-)NCBINCBI36Build 36hg18NCBI36
Celera794,426,275 - 94,426,356 (-)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef794,327,267 - 94,327,348 (-)NCBIHuRef
CHM1_1799,621,773 - 99,621,854 (-)NCBICHM1_1
T2T-CHM13v2.07101,333,839 - 101,333,920 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2799,051,736 - 99,051,817 (-)NCBI
Mir106b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395138,163,999 - 138,164,080 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5138,163,999 - 138,164,080 (-)EnsemblGRCm39 Ensembl
GRCm385138,165,737 - 138,165,818 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5138,165,737 - 138,165,818 (-)EnsemblGRCm38mm10GRCm38
MGSCv375138,606,965 - 138,607,046 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera5135,145,069 - 135,145,150 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map576.97NCBI
MIR106B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.169,498,558 - 9,498,616 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl69,498,558 - 9,498,616 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.069,435,559 - 9,435,617 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.169,284,885 - 9,284,943 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.069,265,181 - 9,265,239 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.069,444,796 - 9,444,854 (+)NCBIUU_Cfam_GSD_1.0

.

Predicted Targets
Summary Value
Count of predictions:9390
Count of gene targets:5611
Count of transcripts:6071
Interacting mature miRNAs:rno-miR-106b-3p, rno-miR-106b-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 49 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61443Btemp2Thermal response to stress QTL 23.30.000094body temperature trait (VT:0005535)core body temperature (CMO:0001036)121502518320794014Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12683319017870186Rat

1 to 10 of 49 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
2 7 28 84 36 36 13 21 13 2 110 64 71 25 45 23


RefSeq Transcripts NR_031862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000053663
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1217,043,344 - 17,043,425 (-)Ensembl
Rnor_6.0 Ensembl1219,307,752 - 19,307,833 (-)Ensembl
RefSeq Acc Id: NR_031862
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81222,157,053 - 22,157,134 (-)NCBI
mRatBN7.21217,043,344 - 17,043,425 (-)NCBI
Rnor_6.01219,307,752 - 19,307,833 (-)NCBI
Rnor_5.01221,365,382 - 21,365,463 (-)NCBI
Celera1218,973,514 - 18,973,595 (-)NCBI
Sequence:

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 9 of 9 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-19809 BioCyc
Ensembl Genes ENSRNOG00000035540 Ensembl
miRBase MI0000889 ENTREZGENE
NCBI Gene 100314235 ENTREZGENE
PhenoGen Mir106b PhenoGen
RatGTEx ENSRNOG00000035540 RatGTEx
RNAcentral URS0000384021 RNACentral
  URS00004449AE RNACentral
  URS000075A299 RNACentral
1 to 9 of 9 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-04-09 Mir106b  microRNA 106b  Mir106b  microRNA mir-106b  Name updated 61478 APPROVED
2010-06-02 Mir106b  microRNA mir-106b      Symbol and Name status set to provisional 70820 PROVISIONAL