Bp83 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bp83 (Blood pressure QTL 83) Rattus norvegicus

Symbol: Bp83
Name: Blood pressure QTL 83
RGD ID: 631543
Trait: arterial blood pressure trait   (VT:2000000)    
Measurement Type: systolic blood pressure   (CMO:0000004)    
LOD Score: 5.8
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81244,139,558 - 52,308,831RGD_MAPPER_PIPELINE
mRatBN7.21215,550,826 - 38,478,808RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01217,185,580 - 44,098,244RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01219,226,299 - 45,929,887RGDRnor5.0
RGSC_v3.41216,535,858 - 39,626,712RGDRGSC3.4
RGSC_v3.11224,295,090 - 39,489,942RGD
Cross Type: intercross
Strains Crossed: SS/Jr WKY 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp83Rathypertension  IDA 619631 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp83Ratincreased systemic arterial blood pressure  QTM 619631 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp83Ratsystolic blood pressure  IDA 619631 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp83Ratcontrolled sodium content diet  IDA 6196318% NaCl dietRGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp83Rattail cuff plethysmography  IDA 619631 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp83RatSS/Jr  IEA 619631 RGD 
Bp83RatWKY  IEA 619631 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp83Ratarterial blood pressure trait  IDA 619631 RGD 


#
Reference Title
Reference Citation
1. Complete genome searches for quantitative trait loci controlling blood pressure and related traits in four segregating populations derived from Dahl hypertensive rats. Kato N, etal., Mamm Genome 1999 Mar;10(3):259-65.


1 to 20 of 515 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
3392Prkar1bprotein kinase cAMP-dependent type I regulatory subunit beta121549223315624942Rat
9133748LOC103691050uncharacterized LOC103691050121563246015636507Rat
3282Pdgfaplatelet derived growth factor subunit A121564554915667056Rat
7536442LOC10254879440S ribosomal protein S27-like121577683915778793Rat
1594158Foxl3forkhead box L3121581217715814534Rat
1311980Fam20cFAM20C, golgi associated secretory pathway kinase121582686415885423Rat
41016460Ppp1r14b-ps2protein phosphatase 1, regulatory (inhibitor) subunit 14B, pseudogene121589313815975566Rat
1566386Znf846zinc finger protein 846121597931216012933Rat
1310463Zfp68zinc finger protein 68121602605816040995Rat
1562569Rps8-ps9ribosomal protein S8, pseudogene 9121604777616048497Rat
1625997Vom2r-ps98vomeronasal 2 receptor, pseudogene 98121606460616066575Rat
6499499Spn-ps1sialophorin, pseudogene 1121610035416101498Rat
1598204Spn-ps7sialophorin, pseudogene 7121610570516106765Rat
6499303Spn-ps2sialophorin, pseudogene 2121611083816112028Rat
2319349Spn-ps6sialophorin, pseudogene 6121611083816117345Rat
1559964Spnl2sialophorin like 2121612615016131108Rat
1598202Spn-ps8sialophorin, pseudogene 8121613127516133558Rat
1359506Spnl1sialophorin like 1121613658316147719Rat
41150475Spn-ps5sialophorin, pseudogene 5121614788516150072Rat
6497070Spn-ps3sialophorin, pseudogene 3121615474016156686Rat

1 to 20 of 515 rows
1 to 20 of 746 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
5502918Prkar1b751121562410215624853Ratregion
5047598RH132420208121562464215624850Ratregion
5050348RH134004190121564244215642632Ratregion
5060396AW525445170121564519015645360Ratregion
37272D12Rat28126121580606515806191Ratregion
5505116LOC783396150121581353015813680Ratregion
5045060RH130960182121582687915827061Ratregion
40408D12Rat91160121587265315872803Ratregion
5065714BF406262207121589157615891783Ratregion
5075028RH138357220121597935815979578Ratregion
5050418RH134045201121603969416039895Ratregion
5064902BE108699150121624945616249606Ratregion
5043508RH130065196121630434816304544Ratregion
5046526RH131804181121631043316310614Ratregion
5041142RH128686150121631792416318074Ratregion
44962D12Got36135121637919316379328Ratregion
5060020BF400282138121642471516424853Ratregion
5086535AW529990171121643362116433792Ratregion
5068848AU046888175121668258616682756Ratregion
5047648RH132448181121676227916762460Ratregion
1 to 20 of 746 rows

Flank 1: (D12Wox8)
Rat AssemblyChrPosition (strand)Source
GRCr81244,139,558 - 44,139,717 (+)Marker Load Pipeline
mRatBN7.21238,478,649 - 38,478,808 (+)MAPPER
Rnor_6.01244,098,086 - 44,098,244NCBI
Rnor_5.01245,929,729 - 45,929,887UniSTS
RGSC_v3.41239,626,553 - 39,626,712RGD
RGSC_v3.41239,626,554 - 39,626,712UniSTS
RGSC_v3.11239,489,942 - 39,490,100RGD
Celera1240,136,979 - 40,137,137UniSTS
RH 3.4 Map12707.3UniSTS
RH 3.4 Map12707.3RGD
RH 2.0 Map12532.5RGD
Cytogenetic Map12q16UniSTS
Peak: (D12Wox16)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21227,014,744 - 27,014,890 (+)MAPPER
Rnor_6.01230,641,840 - 30,641,984NCBI
Rnor_5.01232,578,021 - 32,578,165UniSTS
RGSC_v3.41228,081,212 - 28,081,358RGD
RGSC_v3.41228,081,213 - 28,081,358UniSTS
RGSC_v3.11227,944,601 - 27,944,746RGD
Celera1228,718,605 - 28,718,750UniSTS
RH 3.4 Map12446.5UniSTS
RH 3.4 Map12446.5RGD
Cytogenetic Map12q13UniSTS
Flank 2: (D12Mit3)
Rat AssemblyChrPosition (strand)Source
RGSC_v3.11224,294,687 - 24,295,090RGD
Cytogenetic Map12 RGD


1 to 10 of 69 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
61443Btemp2Thermal response to stress QTL 23.30.000094body temperature trait (VT:0005535)core body temperature (CMO:0001036)121502518320794014Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122308134044726024Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat

1 to 10 of 69 rows


Database
Acc Id
Source(s)
NCBI Gene Bp83

Note Type Note Reference
qtl_cross_type intercross  
qtl_general associates with increased blood pressures than that of the WKY 619631