Srrt (serrate, RNA effector molecule) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Srrt (serrate, RNA effector molecule) Rattus norvegicus
Analyze
Symbol: Srrt
Name: serrate, RNA effector molecule
RGD ID: 1591241
Description: Predicted to enable DNA binding activity; mRNA cap binding complex binding activity; and protein-macromolecule adaptor activity. Predicted to be involved in neuronal stem cell population maintenance; positive regulation of neurogenesis; and regulation of gene expression. Predicted to be located in cytoplasm and nucleoplasm. Predicted to be part of ribonucleoprotein complex. Orthologous to human SRRT (serrate, RNA effector molecule); INTERACTS WITH 4,4'-sulfonyldiphenol; bisphenol A; bisphenol F.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AABR07035787.1; LOC686980; serrate RNA effector molecule homolog; similar to arsenate resistance protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81225,027,883 - 25,042,847 (+)NCBIGRCr8
mRatBN7.21219,392,578 - 19,406,098 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1219,392,625 - 19,406,095 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01222,457,898 - 22,471,090 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1222,466,601 - 22,470,972 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01224,472,569 - 24,486,364 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1221,194,556 - 21,206,708 (+)NCBICelera
Cytogenetic Map12q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,6-tribromophenol  (ISO)
2-methylcholine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP)
bortezomib  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
chlordecone  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
Enterolactone  (ISO)
enzacamene  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folpet  (ISO)
FR900359  (ISO)
geldanamycin  (ISO)
glafenine  (EXP)
ivermectin  (ISO)
lead(0)  (ISO)
methamphetamine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nefazodone  (EXP)
Nutlin-3  (ISO)
ozone  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
resveratrol  (ISO)
SB 203580  (ISO)
selenomethionine  (ISO)
sodium arsenite  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (ISO)
tetramethylpyrazine  (ISO)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19632182   PMID:22198669   PMID:22658674   PMID:22681889   PMID:23793891  


Genomics

Comparative Map Data
Srrt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81225,027,883 - 25,042,847 (+)NCBIGRCr8
mRatBN7.21219,392,578 - 19,406,098 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1219,392,625 - 19,406,095 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01222,457,898 - 22,471,090 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1222,466,601 - 22,470,972 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01224,472,569 - 24,486,364 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1221,194,556 - 21,206,708 (+)NCBICelera
Cytogenetic Map12q12NCBI
SRRT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387100,875,103 - 100,888,664 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7100,875,103 - 100,888,664 (+)EnsemblGRCh38hg38GRCh38
GRCh377100,472,725 - 100,486,285 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367100,310,671 - 100,324,221 (+)NCBINCBI36Build 36hg18NCBI36
Celera795,203,280 - 95,216,866 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef795,103,080 - 95,116,663 (+)NCBIHuRef
CHM1_17100,403,311 - 100,416,895 (+)NCBICHM1_1
T2T-CHM13v2.07102,115,207 - 102,128,766 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2799,832,306 - 99,845,890 (+)NCBI
Srrt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395137,293,966 - 137,306,564 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5137,293,973 - 137,305,928 (-)EnsemblGRCm39 Ensembl
GRCm385137,295,704 - 137,307,716 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5137,295,704 - 137,307,674 (-)EnsemblGRCm38mm10GRCm38
MGSCv375137,736,932 - 137,748,902 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365137,525,619 - 137,536,955 (-)NCBIMGSCv36mm8
Celera5134,278,697 - 134,290,681 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map576.33NCBI
Srrt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495557387,084 - 101,033 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495557386,975 - 101,538 (-)NCBIChiLan1.0ChiLan1.0
SRRT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26118,777,096 - 118,792,244 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17167,043,139 - 167,056,874 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0792,900,023 - 92,913,690 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17106,296,488 - 106,310,257 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7106,296,488 - 106,310,257 (+)Ensemblpanpan1.1panPan2
SRRT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.168,881,171 - 8,893,504 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl68,881,176 - 8,892,963 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha610,587,239 - 10,599,573 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.068,816,987 - 8,829,332 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl68,816,991 - 8,829,303 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.168,669,555 - 8,681,880 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.068,647,613 - 8,659,951 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.068,829,362 - 8,841,702 (-)NCBIUU_Cfam_GSD_1.0
Srrt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344133,181,032 - 133,193,250 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936543843,164 - 855,491 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936543843,144 - 855,491 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRRT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl38,717,785 - 8,731,201 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.138,717,782 - 8,731,204 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.238,144,701 - 8,158,128 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SRRT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12812,336,666 - 12,351,084 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2812,333,884 - 12,349,901 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660703,978,560 - 3,992,404 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srrt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474016,282,005 - 16,292,020 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474016,281,893 - 16,292,552 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Srrt
56 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:27
Count of miRNA genes:27
Interacting mature miRNAs:27
Transcripts:ENSRNOT00000074544
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
61443Btemp2Thermal response to stress QTL 23.30.000094body temperature trait (VT:0005535)core body temperature (CMO:0001036)121502518320794014Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121107382524234895Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121363552330827399Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12136247923Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382528064557Rat

Markers in Region
RH140968  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1221,206,446 - 21,206,636UniSTS
Celera1221,206,366 - 21,206,636UniSTS
Celera1221,206,406 - 21,206,636UniSTS
RH 3.4 Map12281.0UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000074544   ⟹   ENSRNOP00000065372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1219,401,798 - 19,406,095 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113858   ⟹   ENSRNOP00000094934
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1219,392,625 - 19,406,095 (+)Ensembl
RefSeq Acc Id: NM_001427441   ⟹   NP_001414370
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,029,366 - 25,042,847 (+)NCBI
RefSeq Acc Id: XM_039090059   ⟹   XP_038945987
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,027,883 - 25,042,847 (+)NCBI
mRatBN7.21219,392,578 - 19,406,098 (+)NCBI
RefSeq Acc Id: XM_039090060   ⟹   XP_038945988
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,027,883 - 25,042,847 (+)NCBI
mRatBN7.21219,392,578 - 19,406,098 (+)NCBI
RefSeq Acc Id: XM_039090061   ⟹   XP_038945989
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,034,555 - 25,042,847 (+)NCBI
mRatBN7.21219,397,808 - 19,406,098 (+)NCBI
RefSeq Acc Id: XM_039090062   ⟹   XP_038945990
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,035,535 - 25,042,847 (+)NCBI
mRatBN7.21219,399,001 - 19,406,098 (+)NCBI
RefSeq Acc Id: XM_039090063   ⟹   XP_038945991
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,027,883 - 25,042,847 (+)NCBI
mRatBN7.21219,392,579 - 19,406,098 (+)NCBI
RefSeq Acc Id: XP_038945987   ⟸   XM_039090059
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038945988   ⟸   XM_039090060
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038945991   ⟸   XM_039090063
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AM26 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945989   ⟸   XM_039090061
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038945990   ⟸   XM_039090062
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000065372   ⟸   ENSRNOT00000074544
Ensembl Acc Id: ENSRNOP00000094934   ⟸   ENSRNOT00000113858
RefSeq Acc Id: NP_001414370   ⟸   NM_001427441
Protein Domains
SERRATE/Ars2 C-terminal   SERRATE/Ars2 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R7E6-F1-model_v2 AlphaFold M0R7E6 1-489 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1591241 AgrOrtholog
BioCyc Gene G2FUF-19695 BioCyc
Ensembl Genes ENSRNOG00000048277 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000074544.3 UniProtKB/TrEMBL
  ENSRNOT00000113858.1 UniProtKB/TrEMBL
InterPro RBD_domain_sf UniProtKB/TrEMBL
  SE/Ars2 UniProtKB/TrEMBL
  SERRATE/Ars2_C UniProtKB/TrEMBL
  SERRATE/Ars2_N UniProtKB/TrEMBL
NCBI Gene 686980 ENTREZGENE
PANTHER PTHR13165 UniProtKB/TrEMBL
  SERRATE RNA EFFECTOR MOLECULE HOMOLOG UniProtKB/TrEMBL
Pfam ARS2 UniProtKB/TrEMBL
  SERRATE_Ars2_N UniProtKB/TrEMBL
PhenoGen Srrt PhenoGen
RatGTEx ENSRNOG00000048277 RatGTEx
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8I6AM26 ENTREZGENE, UniProtKB/TrEMBL
  M0R7E6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Srrt  serrate, RNA effector molecule  AABR07035787.1    Data merged from RGD:15005471 737654 PROVISIONAL
2019-11-08 AABR07035787.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2015-12-21 Srrt  serrate, RNA effector molecule  LOC686980  similar to arsenate resistance protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC686980  similar to arsenate resistance protein 2      Symbol and Name status set to provisional 70820 PROVISIONAL