Symbol:
Srrt
Name:
serrate, RNA effector molecule
RGD ID:
1591241
Description:
Predicted to enable DNA binding activity; mRNA cap binding complex binding activity; and protein-macromolecule adaptor activity. Predicted to be involved in neuronal stem cell population maintenance; positive regulation of neurogenesis; and regulation of gene expression. Predicted to be located in cytoplasm and nucleoplasm. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nuclear body. Orthologous to human SRRT (serrate, RNA effector molecule); INTERACTS WITH 4,4'-sulfonyldiphenol; bisphenol A; bisphenol F.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
AABR07035787.1; LOC686980; serrate RNA effector molecule homolog; similar to arsenate resistance protein 2
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 12 25,027,883 - 25,042,847 (+) NCBI GRCr8 mRatBN7.2 12 19,392,578 - 19,406,098 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 12 19,392,625 - 19,406,095 (+) Ensembl mRatBN7.2 Ensembl Rnor_6.0 12 22,457,898 - 22,471,090 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 12 22,466,601 - 22,470,972 (+) NCBI Rnor6.0 rn6 Rnor6.0 Rnor_5.0 12 24,472,569 - 24,486,364 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 Celera 12 21,194,556 - 21,206,708 (+) NCBI Celera Cytogenetic Map 12 q12 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Srrt Rat (1->4)-beta-D-glucan multiple interactions ISO Srrt (Mus musculus) 6480464 [perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of SRRT mRNA CTD PMID:36331819 Srrt Rat 1,2-dimethylhydrazine increases expression ISO Srrt (Mus musculus) 6480464 1 and 2-Dimethylhydrazine results in increased expression of SRRT mRNA CTD PMID:22206623 Srrt Rat 14-Deoxy-11,12-didehydroandrographolide decreases expression ISO SRRT (Homo sapiens) 6480464 14-deoxy-11 and 12-didehydroandrographolide results in decreased expression of SRRT mRNA CTD PMID:22101062 Srrt Rat 17alpha-ethynylestradiol affects expression ISO Srrt (Mus musculus) 6480464 Ethinyl Estradiol affects the expression of SRRT mRNA CTD PMID:17555576 Srrt Rat 17beta-estradiol increases expression ISO SRRT (Homo sapiens) 6480464 Estradiol results in increased expression of SRRT mRNA CTD PMID:19167446 Srrt Rat 2,2',4,4'-Tetrabromodiphenyl ether decreases expression ISO SRRT (Homo sapiens) 6480464 2 more ... CTD PMID:19095052 and PMID:31675489 Srrt Rat 2,3,7,8-tetrachlorodibenzodioxine affects expression ISO Srrt (Mus musculus) 6480464 Tetrachlorodibenzodioxin affects the expression of SRRT mRNA CTD PMID:21570461 and PMID:24680724 Srrt Rat 2,4,6-tribromophenol decreases expression ISO SRRT (Homo sapiens) 6480464 2 more ... CTD PMID:31675489 Srrt Rat 2,6-dimethoxyphenol multiple interactions ISO SRRT (Homo sapiens) 6480464 [Sodium Chloride co-treated with pyrogallol 1 and 3-dimethyl ether] results in increased expression of and affects the localization of SRRT protein CTD PMID:38598786 Srrt Rat 2-methylcholine affects expression ISO SRRT (Homo sapiens) 6480464 beta-methylcholine affects the expression of SRRT mRNA CTD PMID:21179406 Srrt Rat 3,3',5,5'-tetrabromobisphenol A decreases expression ISO SRRT (Homo sapiens) 6480464 tetrabromobisphenol A results in decreased expression of SRRT protein CTD PMID:31675489 Srrt Rat 3,4-methylenedioxymethamphetamine increases expression ISO Srrt (Mus musculus) 6480464 N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of SRRT mRNA CTD PMID:20188158 Srrt Rat 4,4'-sulfonyldiphenol multiple interactions EXP 6480464 [bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of SRRT mRNA CTD PMID:36041667 Srrt Rat 4,4'-sulfonyldiphenol increases expression ISO SRRT (Homo sapiens) 6480464 bisphenol S results in increased expression of SRRT protein CTD PMID:34186270 Srrt Rat actinomycin D multiple interactions ISO SRRT (Homo sapiens) 6480464 [Dactinomycin co-treated with nutlin 3] results in increased secretion of SRRT protein CTD PMID:38460933 Srrt Rat aflatoxin B1 increases expression ISO SRRT (Homo sapiens) 6480464 Aflatoxin B1 results in increased expression of SRRT mRNA CTD PMID:22100608 Srrt Rat aflatoxin B1 increases expression ISO Srrt (Mus musculus) 6480464 Aflatoxin B1 results in increased expression of SRRT mRNA CTD PMID:19770486 Srrt Rat all-trans-retinoic acid decreases expression ISO SRRT (Homo sapiens) 6480464 Tretinoin results in decreased expression of SRRT mRNA CTD PMID:17218384 Srrt Rat anthra[1,9-cd]pyrazol-6(2H)-one multiple interactions ISO SRRT (Homo sapiens) 6480464 pyrazolanthrone inhibits the reaction [sodium arsenite results in increased expression of SRRT protein] CTD PMID:23219847 Srrt Rat aristolochic acid A increases expression ISO SRRT (Homo sapiens) 6480464 aristolochic acid I results in increased expression of SRRT mRNA CTD PMID:33212167 Srrt Rat Aroclor 1254 decreases expression ISO Srrt (Mus musculus) 6480464 Chlorodiphenyl (54% Chlorine) results in decreased expression of SRRT mRNA CTD PMID:23650126 Srrt Rat arsane multiple interactions ISO SRRT (Homo sapiens) 6480464 [sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of SRRT mRNA CTD PMID:39836092 Srrt Rat arsenic atom multiple interactions ISO SRRT (Homo sapiens) 6480464 [sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of SRRT mRNA CTD PMID:39836092 Srrt Rat arsenous acid increases expression ISO SRRT (Homo sapiens) 6480464 Arsenic Trioxide results in increased expression of SRRT protein CTD PMID:25419056 Srrt Rat benzo[a]pyrene increases methylation ISO SRRT (Homo sapiens) 6480464 Benzo(a)pyrene results in increased methylation of SRRT 3' UTR and Benzo(a)pyrene results in increased methylation of SRRT promoter CTD PMID:27901495 Srrt Rat benzo[a]pyrene increases expression ISO SRRT (Homo sapiens) 6480464 Benzo(a)pyrene results in increased expression of SRRT mRNA and Benzo(a)pyrene results in increased expression of SRRT protein CTD PMID:32234424 and PMID:33278487 Srrt Rat benzo[a]pyrene diol epoxide I decreases expression ISO SRRT (Homo sapiens) 6480464 7 more ... CTD PMID:20018196 Srrt Rat beta-lapachone decreases expression ISO SRRT (Homo sapiens) 6480464 beta-lapachone results in decreased expression of SRRT mRNA CTD PMID:38218311 Srrt Rat bisphenol A decreases expression ISO SRRT (Homo sapiens) 6480464 bisphenol A results in decreased expression of SRRT mRNA and bisphenol A results in decreased expression of SRRT protein CTD PMID:29275510 and PMID:31675489 Srrt Rat bisphenol A affects splicing ISO Srrt (Mus musculus) 6480464 bisphenol A affects the splicing of SRRT mRNA CTD PMID:37894381 Srrt Rat bisphenol A multiple interactions EXP 6480464 [bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of SRRT mRNA CTD PMID:36041667 Srrt Rat bisphenol A decreases expression EXP 6480464 bisphenol A results in decreased expression of SRRT mRNA CTD PMID:30816183 and PMID:34947998 Srrt Rat Bisphenol B increases expression ISO SRRT (Homo sapiens) 6480464 bisphenol B results in increased expression of SRRT protein CTD PMID:34186270 Srrt Rat bisphenol F multiple interactions EXP 6480464 [bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of SRRT mRNA CTD PMID:36041667 Srrt Rat bortezomib decreases expression ISO SRRT (Homo sapiens) 6480464 Bortezomib results in decreased expression of SRRT mRNA CTD PMID:20977926 Srrt Rat cadmium atom multiple interactions ISO Srrt (Mus musculus) 6480464 [Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of SRRT mRNA CTD PMID:37325564 Srrt Rat cadmium dichloride decreases expression ISO SRRT (Homo sapiens) 6480464 Cadmium Chloride results in decreased expression of SRRT mRNA CTD PMID:38568856 Srrt Rat cadmium dichloride multiple interactions ISO Srrt (Mus musculus) 6480464 [Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of SRRT mRNA CTD PMID:37325564 Srrt Rat carbamazepine affects expression ISO SRRT (Homo sapiens) 6480464 Carbamazepine affects the expression of SRRT mRNA CTD PMID:25979313 Srrt Rat chlordecone increases expression ISO Srrt (Mus musculus) 6480464 Chlordecone results in increased expression of SRRT mRNA CTD PMID:33711761 Srrt Rat copper atom multiple interactions ISO SRRT (Homo sapiens) 6480464 [Chelating Agents binds to Copper] which results in decreased expression of SRRT mRNA CTD PMID:31162603 Srrt Rat copper(0) multiple interactions ISO SRRT (Homo sapiens) 6480464 [Chelating Agents binds to Copper] which results in decreased expression of SRRT mRNA CTD PMID:31162603 Srrt Rat coumarin affects phosphorylation ISO SRRT (Homo sapiens) 6480464 coumarin affects the phosphorylation of SRRT protein CTD PMID:35688186 Srrt Rat coumestrol multiple interactions ISO SRRT (Homo sapiens) 6480464 [Coumestrol co-treated with 2 and 3-bis(3'-hydroxybenzyl)butyrolactone] results in increased expression of SRRT mRNA CTD PMID:19167446 Srrt Rat coumestrol increases expression ISO SRRT (Homo sapiens) 6480464 Coumestrol results in increased expression of SRRT mRNA CTD PMID:19167446 Srrt Rat diarsenic trioxide increases expression ISO SRRT (Homo sapiens) 6480464 Arsenic Trioxide results in increased expression of SRRT protein CTD PMID:25419056 Srrt Rat diazinon increases methylation ISO SRRT (Homo sapiens) 6480464 Diazinon results in increased methylation of SRRT gene CTD PMID:22964155 Srrt Rat Dibutyl phosphate affects expression ISO SRRT (Homo sapiens) 6480464 di-n-butylphosphoric acid affects the expression of SRRT mRNA CTD PMID:37042841 Srrt Rat dicrotophos increases expression ISO SRRT (Homo sapiens) 6480464 dicrotophos results in increased expression of SRRT mRNA CTD PMID:28302478 Srrt Rat Enterolactone multiple interactions ISO SRRT (Homo sapiens) 6480464 [Coumestrol co-treated with 2 and 3-bis(3'-hydroxybenzyl)butyrolactone] results in increased expression of SRRT mRNA CTD PMID:19167446 Srrt Rat enzacamene multiple interactions ISO SRRT (Homo sapiens) 6480464 EPHB4 mRNA promotes the reaction [enzacamene results in increased expression of SRRT mRNA] CTD PMID:30597193 Srrt Rat enzacamene increases expression ISO SRRT (Homo sapiens) 6480464 enzacamene results in increased expression of SRRT mRNA CTD PMID:30597193 Srrt Rat enzyme inhibitor multiple interactions ISO SRRT (Homo sapiens) 6480464 [Enzyme Inhibitors results in decreased activity of OGA protein] which results in increased O-linked glycosylation of SRRT protein CTD PMID:23301498 Srrt Rat ethanol multiple interactions ISO Srrt (Mus musculus) 6480464 Ethanol affects the expression of and affects the splicing of SRRT mRNA CTD PMID:30319688 Srrt Rat flutamide increases expression EXP 6480464 Flutamide results in increased expression of SRRT mRNA CTD PMID:24136188 Srrt Rat folpet decreases expression ISO Srrt (Mus musculus) 6480464 folpet results in decreased expression of SRRT mRNA CTD PMID:31558096 Srrt Rat FR900359 affects phosphorylation ISO SRRT (Homo sapiens) 6480464 FR900359 affects the phosphorylation of SRRT protein CTD PMID:37730182 Srrt Rat geldanamycin increases expression ISO SRRT (Homo sapiens) 6480464 geldanamycin results in increased expression of SRRT mRNA CTD PMID:26705709 Srrt Rat glafenine increases expression EXP 6480464 Glafenine results in increased expression of SRRT mRNA CTD PMID:24136188 Srrt Rat ivermectin decreases expression ISO SRRT (Homo sapiens) 6480464 Ivermectin results in decreased expression of SRRT protein CTD PMID:32959892 Srrt Rat lead(0) decreases expression ISO SRRT (Homo sapiens) 6480464 Lead results in decreased expression of SRRT mRNA CTD PMID:19921347 Srrt Rat lead(0) affects expression ISO SRRT (Homo sapiens) 6480464 Lead affects the expression of SRRT mRNA CTD PMID:28903495 Srrt Rat methamphetamine increases expression ISO Srrt (Mus musculus) 6480464 Methamphetamine results in increased expression of SRRT mRNA CTD PMID:26307267 Srrt Rat methamphetamine decreases methylation ISO Srrt (Mus musculus) 6480464 Methamphetamine results in decreased methylation of SRRT promoter CTD PMID:26307267 Srrt Rat N-methyl-4-phenylpyridinium decreases expression ISO Srrt (Mus musculus) 6480464 1-Methyl-4-phenylpyridinium results in decreased expression of SRRT protein CTD PMID:26558463 Srrt Rat nefazodone increases expression EXP 6480464 nefazodone results in increased expression of SRRT mRNA CTD PMID:24136188 Srrt Rat nitrates multiple interactions ISO Srrt (Mus musculus) 6480464 [Particulate Matter results in increased abundance of Nitrates] which results in increased expression of SRRT mRNA CTD PMID:35964746 Srrt Rat Nutlin-3 multiple interactions ISO SRRT (Homo sapiens) 6480464 [Dactinomycin co-treated with nutlin 3] results in increased secretion of SRRT protein CTD PMID:38460933 Srrt Rat ozone multiple interactions ISO SRRT (Homo sapiens) 6480464 [Air Pollutants results in increased abundance of Ozone] which affects the expression of SRRT mRNA CTD PMID:35430440 Srrt Rat perfluorooctane-1-sulfonic acid multiple interactions ISO Srrt (Mus musculus) 6480464 [perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of SRRT mRNA CTD PMID:36331819 Srrt Rat resveratrol decreases expression ISO Srrt (Mus musculus) 6480464 resveratrol results in decreased expression of SRRT protein CTD PMID:25505154 Srrt Rat SB 203580 multiple interactions ISO SRRT (Homo sapiens) 6480464 SB 203580 inhibits the reaction [sodium arsenite results in increased expression of SRRT protein] CTD PMID:26404762 Srrt Rat selenomethionine affects expression ISO SRRT (Homo sapiens) 6480464 Selenomethionine affects the expression of SRRT mRNA CTD PMID:17222674 Srrt Rat sodium arsenite multiple interactions ISO SRRT (Homo sapiens) 6480464 3-(4-methylphenylsulfonyl)-2-propenenitrile inhibits the reaction [sodium arsenite results in increased expression of SRRT protein] more ... CTD PMID:23219847 more ... Srrt Rat sodium arsenite decreases expression ISO SRRT (Homo sapiens) 6480464 sodium arsenite results in decreased expression of SRRT mRNA CTD PMID:38568856 Srrt Rat sodium arsenite increases expression ISO SRRT (Homo sapiens) 6480464 sodium arsenite results in increased expression of SRRT mRNA and sodium arsenite results in increased expression of SRRT protein CTD PMID:23219847 more ... Srrt Rat sodium chloride multiple interactions ISO SRRT (Homo sapiens) 6480464 [Sodium Chloride co-treated with pyrogallol 1 and 3-dimethyl ether] results in increased expression of and affects the localization of SRRT protein CTD PMID:38598786 Srrt Rat tamoxifen affects expression ISO Srrt (Mus musculus) 6480464 Tamoxifen affects the expression of SRRT mRNA CTD PMID:17555576 Srrt Rat tert-butyl hydroperoxide decreases expression ISO SRRT (Homo sapiens) 6480464 tert-Butylhydroperoxide results in decreased expression of SRRT mRNA CTD PMID:15336504 Srrt Rat tetrachloroethene decreases expression ISO Srrt (Mus musculus) 6480464 Tetrachloroethylene results in decreased expression of SRRT mRNA CTD PMID:28973375 Srrt Rat tetrachloromethane increases expression ISO Srrt (Mus musculus) 6480464 Carbon Tetrachloride results in increased expression of SRRT mRNA CTD PMID:31919559 Srrt Rat tetramethylpyrazine multiple interactions ISO SRRT (Homo sapiens) 6480464 tetramethylpyrazine inhibits the reaction [sodium arsenite results in increased expression of SRRT protein] CTD PMID:26404762 Srrt Rat titanium dioxide decreases methylation ISO Srrt (Mus musculus) 6480464 titanium dioxide results in decreased methylation of SRRT gene CTD PMID:35295148 Srrt Rat triphenyl phosphate affects expression ISO SRRT (Homo sapiens) 6480464 triphenyl phosphate affects the expression of SRRT mRNA CTD PMID:37042841 Srrt Rat triptonide increases expression ISO Srrt (Mus musculus) 6480464 triptonide results in increased expression of SRRT mRNA CTD PMID:33045310 Srrt Rat valproic acid increases methylation ISO SRRT (Homo sapiens) 6480464 Valproic Acid results in increased methylation of SRRT gene CTD PMID:29154799 Srrt Rat valproic acid decreases expression ISO SRRT (Homo sapiens) 6480464 Valproic Acid results in decreased expression of SRRT mRNA CTD PMID:29154799 Srrt Rat valproic acid increases expression ISO SRRT (Homo sapiens) 6480464 Valproic Acid results in increased expression of SRRT mRNA CTD PMID:23179753 Srrt Rat valproic acid affects expression ISO SRRT (Homo sapiens) 6480464 Valproic Acid affects the expression of SRRT mRNA CTD PMID:25979313
(1->4)-beta-D-glucan (ISO) 1,2-dimethylhydrazine (ISO) 14-Deoxy-11,12-didehydroandrographolide (ISO) 17alpha-ethynylestradiol (ISO) 17beta-estradiol (ISO) 2,2',4,4'-Tetrabromodiphenyl ether (ISO) 2,3,7,8-tetrachlorodibenzodioxine (ISO) 2,4,6-tribromophenol (ISO) 2,6-dimethoxyphenol (ISO) 2-methylcholine (ISO) 3,3',5,5'-tetrabromobisphenol A (ISO) 3,4-methylenedioxymethamphetamine (ISO) 4,4'-sulfonyldiphenol (EXP,ISO) actinomycin D (ISO) aflatoxin B1 (ISO) all-trans-retinoic acid (ISO) anthra[1,9-cd]pyrazol-6(2H)-one (ISO) aristolochic acid A (ISO) Aroclor 1254 (ISO) arsane (ISO) arsenic atom (ISO) arsenous acid (ISO) benzo[a]pyrene (ISO) benzo[a]pyrene diol epoxide I (ISO) beta-lapachone (ISO) bisphenol A (EXP,ISO) Bisphenol B (ISO) bisphenol F (EXP) bortezomib (ISO) cadmium atom (ISO) cadmium dichloride (ISO) carbamazepine (ISO) chlordecone (ISO) copper atom (ISO) copper(0) (ISO) coumarin (ISO) coumestrol (ISO) diarsenic trioxide (ISO) diazinon (ISO) Dibutyl phosphate (ISO) dicrotophos (ISO) Enterolactone (ISO) enzacamene (ISO) enzyme inhibitor (ISO) ethanol (ISO) flutamide (EXP) folpet (ISO) FR900359 (ISO) geldanamycin (ISO) glafenine (EXP) ivermectin (ISO) lead(0) (ISO) methamphetamine (ISO) N-methyl-4-phenylpyridinium (ISO) nefazodone (EXP) nitrates (ISO) Nutlin-3 (ISO) ozone (ISO) perfluorooctane-1-sulfonic acid (ISO) resveratrol (ISO) SB 203580 (ISO) selenomethionine (ISO) sodium arsenite (ISO) sodium chloride (ISO) tamoxifen (ISO) tert-butyl hydroperoxide (ISO) tetrachloroethene (ISO) tetrachloromethane (ISO) tetramethylpyrazine (ISO) titanium dioxide (ISO) triphenyl phosphate (ISO) triptonide (ISO) valproic acid (ISO)
Srrt Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 12 25,027,883 - 25,042,847 (+) NCBI GRCr8 mRatBN7.2 12 19,392,578 - 19,406,098 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 12 19,392,625 - 19,406,095 (+) Ensembl mRatBN7.2 Ensembl Rnor_6.0 12 22,457,898 - 22,471,090 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 12 22,466,601 - 22,470,972 (+) NCBI Rnor6.0 rn6 Rnor6.0 Rnor_5.0 12 24,472,569 - 24,486,364 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 Celera 12 21,194,556 - 21,206,708 (+) NCBI Celera Cytogenetic Map 12 q12 NCBI
SRRT Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 7 100,875,103 - 100,888,664 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 7 100,875,103 - 100,888,664 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 7 100,472,725 - 100,486,285 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 7 100,310,671 - 100,324,221 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 7 95,203,280 - 95,216,866 (+) NCBI Celera Cytogenetic Map 7 q22.1 NCBI HuRef 7 95,103,080 - 95,116,663 (+) NCBI HuRef CHM1_1 7 100,403,311 - 100,416,895 (+) NCBI CHM1_1 T2T-CHM13v2.0 7 102,115,207 - 102,128,766 (+) NCBI T2T-CHM13v2.0 CRA_TCAGchr7v2 7 99,832,306 - 99,845,890 (+) NCBI
Srrt Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 5 137,293,966 - 137,306,564 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 5 137,293,973 - 137,305,928 (-) Ensembl GRCm39 Ensembl GRCm38 5 137,295,704 - 137,307,716 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 5 137,295,704 - 137,307,674 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 5 137,736,932 - 137,748,902 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 5 137,525,619 - 137,536,955 (-) NCBI MGSCv36 mm8 Celera 5 134,278,697 - 134,290,681 (-) NCBI Celera Cytogenetic Map 5 G2 NCBI cM Map 5 76.33 NCBI
Srrt Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955573 87,084 - 101,033 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955573 86,975 - 101,538 (-) NCBI ChiLan1.0 ChiLan1.0
SRRT Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 6 118,777,096 - 118,792,244 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 7 167,043,139 - 167,056,874 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 7 92,900,023 - 92,913,690 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 7 106,296,488 - 106,310,257 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 7 106,296,488 - 106,310,257 (+) Ensembl panpan1.1 panPan2
SRRT Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 6 8,881,171 - 8,893,504 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 6 8,881,176 - 8,892,963 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 6 10,587,239 - 10,599,573 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 6 8,816,987 - 8,829,332 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 6 8,816,991 - 8,829,303 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 6 8,669,555 - 8,681,880 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 6 8,647,613 - 8,659,951 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 6 8,829,362 - 8,841,702 (-) NCBI UU_Cfam_GSD_1.0
Srrt
SRRT Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 3 8,717,785 - 8,731,201 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 3 8,717,782 - 8,731,204 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 3 8,144,701 - 8,158,128 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
SRRT Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 28 12,336,666 - 12,351,084 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 28 12,333,884 - 12,349,901 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666070 3,978,560 - 3,992,404 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Srrt
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Predicted Target Of
Count of predictions: 27 Count of miRNA genes: 27 Interacting mature miRNAs: 27 Transcripts: ENSRNOT00000074544 Prediction methods: Miranda, Rnahybrid Result types: miRGate_prediction
2312418 Kidm41 Kidney mass QTL 41 3.7 0.0001 kidney mass (VT:0002707) single kidney wet weight to body weight ratio (CMO:0000622) 12 1 19611090 Rat 631560 Apr1 Acute phase response QTL 1 6.1 orosomucoid 1 amount (VT:0010541) plasma orosomucoid 1 level (CMO:0001467) 12 19144362 46669029 Rat 61443 Btemp2 Thermal response to stress QTL 2 3.3 0.000094 body temperature trait (VT:0005535) core body temperature (CMO:0001036) 12 15025183 20794014 Rat 8552964 Pigfal17 Plasma insulin-like growth factor 1 level QTL 17 3.5 blood insulin-like growth factor amount (VT:0010479) plasma insulin-like growth factor 1 level (CMO:0001299) 12 5564495 46669029 Rat 7411641 Foco19 Food consumption QTL 19 27.7 0.001 eating behavior trait (VT:0001431) feed conversion ratio (CMO:0001312) 12 5564495 46669029 Rat 1549912 Bp268 Blood pressure QTL 268 arterial blood pressure trait (VT:2000000) diastolic blood pressure (CMO:0000005) 10 13182736 46669029 Rat 2302060 Pia37 Pristane induced arthritis QTL 37 6.1 0.001 blood immunoglobulin amount (VT:0002460) serum immunoglobulin G1 level (CMO:0002115) 12 13198157 46669029 Rat 9590147 Scort7 Serum corticosterone level QTL 7 13.61 0.001 blood corticosterone amount (VT:0005345) plasma corticosterone level (CMO:0001173) 12 1 42110980 Rat 1641928 Alcrsp5 Alcohol response QTL 5 response to alcohol trait (VT:0010489) duration of loss of righting reflex (CMO:0002289) 12 12812385 46669029 Rat 8552912 Pigfal6 Plasma insulin-like growth factor 1 level QTL 6 5 blood insulin-like growth factor amount (VT:0010479) plasma insulin-like growth factor 1 level (CMO:0001299) 12 5564498 46669029 Rat 1549829 Scl48 Serum cholesterol level QTL 48 5 blood cholesterol amount (VT:0000180) serum total cholesterol level (CMO:0000363) 12 9603277 46669029 Rat 10059594 Kidm46 Kidney mass QTL 46 3.79 0.025 kidney mass (VT:0002707) both kidneys wet weight to body weight ratio (CMO:0000340) 12 6107579 46669029 Rat 61331 Eau2 Experimental allergic uveoretinitis QTL 2 0.0005 uvea integrity trait (VT:0010551) experimental autoimmune uveitis score (CMO:0001504) 12 8525423 28064601 Rat 1581516 Cm56 Cardiac mass QTL 56 4.2 0.05 heart left ventricle mass (VT:0007031) heart left ventricle weight to body weight ratio (CMO:0000530) 12 1 29333307 Rat 9590086 Insglur6 Insulin/glucose ratio QTL 6 18.97 0.001 blood insulin amount (VT:0001560) calculated plasma insulin level (CMO:0002170) 12 1 42110980 Rat 8552918 Pigfal7 Plasma insulin-like growth factor 1 level QTL 7 blood insulin-like growth factor amount (VT:0010479) plasma insulin-like growth factor 1 level (CMO:0001299) 12 5564495 46669029 Rat 2293684 Bmd26 Bone mineral density QTL 26 4.4 0.0002 femur mineral mass (VT:0010011) total volumetric bone mineral density (CMO:0001728) 12 15872653 32974238 Rat 6893681 Bw109 Body weight QTL 109 2.3 0.004 body mass (VT:0001259) body weight (CMO:0000012) 12 1 23297788 Rat 1549902 Bp269 Blood pressure QTL 269 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 12 13182736 46669029 Rat 1302792 Scl21 Serum cholesterol level QTL 21 3.8 0.0011 blood cholesterol amount (VT:0000180) plasma total cholesterol level (CMO:0000585) 12 7196730 46669029 Rat 61404 Bw120 Body weight QTL 120 5.1 body mass (VT:0001259) body mass index (BMI) (CMO:0000105) 12 12351619 46669029 Rat 1331786 Kidm11 Kidney mass QTL 11 3.571 kidney mass (VT:0002707) right kidney wet weight (CMO:0000082) 12 11073825 24234895 Rat 1598855 Bp294 Blood pressure QTL 294 3.5 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 12 1 34851688 Rat 2293699 Bss49 Bone structure and strength QTL 49 5.61 0.0001 lumbar vertebra size trait (VT:0010518) lumbar vertebra trabecular cross-sectional area (CMO:0001692) 12 10474137 46669029 Rat 10755457 Coatc14 Coat color QTL 14 0.01759 coat/hair pigmentation trait (VT:0010463) pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) 12 1 22591684 Rat 1331761 Bp218 Blood pressure QTL 218 2.973 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 12 11073825 45055165 Rat 634351 Apr5 Acute phase response QTL 5 6.7 blood interleukin-6 amount (VT:0008595) plasma interleukin-6 level (CMO:0001927) 12 1 44503507 Rat 8694179 Bw150 Body weight QTL 150 2.9 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 12 1 42110980 Rat 634350 Apr4 Acute phase response QTL 4 6 orosomucoid 1 amount (VT:0010541) plasma orosomucoid 1 level (CMO:0001467) 12 1172005 46172005 Rat 7411545 Bw128 Body weight QTL 128 5.2 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 12 1 42110980 Rat 61416 Pia4 Pristane induced arthritis QTL 4 8.4 joint integrity trait (VT:0010548) arthritic paw count (CMO:0001460) 12 13635523 30827399 Rat 7411547 Bw129 Body weight QTL 129 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 6 5564495 46669029 Rat 7387292 Kidm42 Kidney mass QTL 42 3.03 0.0004 kidney mass (VT:0002707) left kidney wet weight (CMO:0000083) 12 1 36247923 Rat 61421 Cia12 Collagen induced arthritis QTL 12 4.6 joint integrity trait (VT:0010548) joint inflammation composite score (CMO:0000919) 12 13635523 35682913 Rat 1300157 Rf21 Renal function QTL 21 4.4 renal blood flow trait (VT:2000006) absolute change in renal blood flow rate (CMO:0001168) 12 9318216 32103380 Rat 737979 Pia22 Pristane induced arthritis QTL 22 53.1 joint integrity trait (VT:0010548) joint inflammation composite score (CMO:0000919) 12 1 44465750 Rat 2303569 Gluco44 Glucose level QTL 44 2 blood glucose amount (VT:0000188) blood glucose level (CMO:0000046) 12 12812385 46669029 Rat 7411586 Foco5 Food consumption QTL 5 5.4 0.001 eating behavior trait (VT:0001431) feed conversion ratio (CMO:0001312) 12 1 42110980 Rat 2303575 Insul14 Insulin level QTL 14 4 blood insulin amount (VT:0001560) blood insulin level (CMO:0000349) 12 1 42450532 Rat 7411588 Foco6 Food consumption QTL 6 0.001 eating behavior trait (VT:0001431) feed conversion ratio (CMO:0001312) 12 5564495 46669029 Rat 2302042 Pia38 Pristane induced arthritis QTL 38 3.5 0.001 blood immunoglobulin amount (VT:0002460) serum immunoglobulin G1 level (CMO:0002115) 12 1 44503507 Rat 2300186 Bmd59 Bone mineral density QTL 59 7.1 0.0001 lumbar vertebra mineral mass (VT:0010511) volumetric bone mineral density (CMO:0001553) 12 10474137 46669029 Rat 7411595 Foco9 Food consumption QTL 9 4 0.001 eating behavior trait (VT:0001431) feed conversion ratio (CMO:0001312) 12 1 42110980 Rat 7411597 Foco10 Food consumption QTL 10 0.001 eating behavior trait (VT:0001431) feed conversion ratio (CMO:0001312) 12 5564495 46669029 Rat 2293086 Iddm30 Insulin dependent diabetes mellitus QTL 30 3.82 blood glucose amount (VT:0000188) blood glucose level (CMO:0000046) 12 8449490 28302290 Rat 7411660 Foco28 Food consumption QTL 28 10.9 0.001 eating behavior trait (VT:0001431) feed conversion ratio (CMO:0001312) 12 1 42110980 Rat 631543 Bp83 Blood pressure QTL 83 5.8 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 12 15550826 38478808 Rat 1331755 Bp219 Blood pressure QTL 219 3.041 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 12 11073825 28064557 Rat
RH140968
Rat Assembly Chr Position (strand) Source JBrowse Celera 12 21,206,446 - 21,206,636 UniSTS Celera 12 21,206,366 - 21,206,636 UniSTS Celera 12 21,206,406 - 21,206,636 UniSTS RH 3.4 Map 12 281.0 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSRNOT00000074544 ⟹ ENSRNOP00000065372
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 12 19,401,798 - 19,406,095 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000113858 ⟹ ENSRNOP00000094934
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 12 19,392,625 - 19,406,095 (+) Ensembl
RefSeq Acc Id:
NM_001427441 ⟹ NP_001414370
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 12 25,029,366 - 25,042,847 (+) NCBI
RefSeq Acc Id:
XM_039090059 ⟹ XP_038945987
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 12 25,027,883 - 25,042,847 (+) NCBI mRatBN7.2 12 19,392,578 - 19,406,098 (+) NCBI
RefSeq Acc Id:
XM_039090060 ⟹ XP_038945988
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 12 25,027,883 - 25,042,847 (+) NCBI mRatBN7.2 12 19,392,578 - 19,406,098 (+) NCBI
RefSeq Acc Id:
XM_039090061 ⟹ XP_038945989
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 12 25,034,555 - 25,042,847 (+) NCBI mRatBN7.2 12 19,397,808 - 19,406,098 (+) NCBI
RefSeq Acc Id:
XM_039090062 ⟹ XP_038945990
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 12 25,035,535 - 25,042,847 (+) NCBI mRatBN7.2 12 19,399,001 - 19,406,098 (+) NCBI
RefSeq Acc Id:
XM_039090063 ⟹ XP_038945991
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 12 25,027,883 - 25,042,847 (+) NCBI mRatBN7.2 12 19,392,579 - 19,406,098 (+) NCBI
RefSeq Acc Id:
XP_038945987 ⟸ XM_039090059
- Peptide Label:
isoform X1
RefSeq Acc Id:
XP_038945988 ⟸ XM_039090060
- Peptide Label:
isoform X2
RefSeq Acc Id:
XP_038945991 ⟸ XM_039090063
- Peptide Label:
isoform X5
- UniProtKB:
A0A8I6AM26 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_038945989 ⟸ XM_039090061
- Peptide Label:
isoform X3
RefSeq Acc Id:
XP_038945990 ⟸ XM_039090062
- Peptide Label:
isoform X4
Ensembl Acc Id:
ENSRNOP00000065372 ⟸ ENSRNOT00000074544
Ensembl Acc Id:
ENSRNOP00000094934 ⟸ ENSRNOT00000113858
RefSeq Acc Id:
NP_001414370 ⟸ NM_001427441
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2022-06-02
Srrt
serrate, RNA effector molecule
AABR07035787.1
Data merged from RGD:15005471
737654 PROVISIONAL
2019-11-08
AABR07035787.1
Symbol and Name status set to provisional
45752 PROVISIONAL
2015-12-21
Srrt
serrate, RNA effector molecule
LOC686980
similar to arsenate resistance protein 2
Nomenclature updated to reflect human and mouse nomenclature
1299863 APPROVED
2006-11-20
LOC686980
similar to arsenate resistance protein 2
Symbol and Name status set to provisional
70820 PROVISIONAL
