Srrt (serrate, RNA effector molecule)

Gene: Srrt (serrate, RNA effector molecule) Ictidomys tridecemlineatus

Analyze

Symbol:

Srrt

Name:

serrate, RNA effector molecule

RGD ID:

12671324

Description:

ENCODES a protein that exhibits DNA binding (inferred); mRNA cap binding complex binding (inferred); nucleic acid binding (inferred); INVOLVED IN mRNA processing (inferred); neuronal stem cell population maintenance (inferred); positive regulation of neurogenesis (inferred); ASSOCIATED WITH genetic disease (ortholog); glioblastoma (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytoplasm (inferred); nuclear body (inferred); nucleoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

serrate RNA effector molecule homolog; serrate, RNA effector molecule, transcript variant X1; serrate, RNA effector molecule, transcript variant X2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	133,181,032 - 133,193,250 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936543	843,164 - 855,491 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936543	843,144 - 855,491 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

glioblastoma (ISO)

pleomorphic xanthoastrocytoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA processing (IEA)

neuronal stem cell population maintenance (IEA)

positive regulation of neurogenesis (IEA)

primary miRNA processing (IEA)

regulation of DNA-templated transcription (IEA)

Cellular Component

cytoplasm (IEA)

nuclear body (IEA)

nucleoplasm (IEA)

nucleus (IEA)

protein-containing complex (IEA)

ribonucleoprotein complex (IEA)

Molecular Function

DNA binding (IEA)

mRNA cap binding complex binding (IEA)

nucleic acid binding (IEA)

protein binding (ISO)

protein-macromolecule adaptor activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Srrt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	133,181,032 - 133,193,250 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936543	843,164 - 855,491 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936543	843,144 - 855,491 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SRRT
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	100,875,103 - 100,888,664 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	100,875,103 - 100,888,664 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	100,472,725 - 100,486,285 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	100,310,671 - 100,324,221 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	95,203,280 - 95,216,866 (+)	NCBI		Celera
Cytogenetic Map	7	q22.1	NCBI
HuRef	7	95,103,080 - 95,116,663 (+)	NCBI		HuRef
CHM1_1	7	100,403,311 - 100,416,895 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	102,115,207 - 102,128,766 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	99,832,306 - 99,845,890 (+)	NCBI

Srrt
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	137,293,966 - 137,306,564 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	137,293,973 - 137,305,928 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	137,295,704 - 137,307,716 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	137,295,704 - 137,307,674 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	137,736,932 - 137,748,902 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	137,525,619 - 137,536,955 (-)	NCBI		MGSCv36	mm8
Celera	5	134,278,697 - 134,290,681 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	76.33	NCBI

Srrt
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	25,027,883 - 25,042,847 (+)	NCBI		GRCr8
mRatBN7.2	12	19,392,578 - 19,406,098 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	19,392,625 - 19,406,095 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	12	22,457,898 - 22,471,090 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	22,466,601 - 22,470,972 (+)	NCBI	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	24,472,569 - 24,486,364 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	12	21,194,556 - 21,206,708 (+)	NCBI		Celera
Cytogenetic Map	12	q12	NCBI

Srrt
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955573	87,084 - 101,033 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955573	86,975 - 101,538 (-)	NCBI	ChiLan1.0	ChiLan1.0

SRRT
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	118,777,096 - 118,792,244 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	167,043,139 - 167,056,874 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	92,900,023 - 92,913,690 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	106,296,488 - 106,310,257 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	106,296,488 - 106,310,257 (+)	Ensembl	panpan1.1		panPan2

SRRT
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	8,881,171 - 8,893,504 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	8,881,176 - 8,892,963 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	10,587,239 - 10,599,573 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	8,816,987 - 8,829,332 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	8,816,991 - 8,829,303 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	8,669,555 - 8,681,880 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	8,647,613 - 8,659,951 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	8,829,362 - 8,841,702 (-)	NCBI		UU_Cfam_GSD_1.0

SRRT
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	8,717,785 - 8,731,201 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	8,717,782 - 8,731,204 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	8,144,701 - 8,158,128 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SRRT
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	12,336,666 - 12,351,084 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	12,333,884 - 12,349,901 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666070	3,978,560 - 3,992,404 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Srrt
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	16,282,005 - 16,292,020 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	16,281,893 - 16,292,552 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005328477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013360047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040278104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000013783 ⟹ ENSSTOP00000012353

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936543	843,164 - 855,491 (+)	Ensembl

RefSeq Acc Id:

XM_005328477 ⟹ XP_005328534

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	133,181,032 - 133,193,250 (-)	NCBI
SpeTri2.0	NW_004936543	843,144 - 855,491 (+)	NCBI

Sequence:

show sequence

ATTTTCCCCTCTTCGCGGCGCTTTGGTTCCAGTTCGGGCCGCGCGGGGCTCGTTTGTGGTCGGG
TCAGATCTCTGCCCGTGACGCAGGCGCAGCGCCAGCGGAGTGCGCTACCGCCCATTCTCTGTGG
TCTCCCTCTCCTCCCCTGTTTTCGGCCCCCTGGCTGAGAGCCCCGCGCCTCGCTCTCACCCTCT
GCGCCTCCCTCGTCGCGCGCCCGTGTCGCCTGGAAGACAAGCCCGCCCTCGCGCGCGACCAACG
GCCGCGACCGCTCCCAGACCGCGCCATGGGTGACAGTGACGACGAATACGATCGAAGGCGCAGG
GACAAGTTCAGAAGAGAGCGCAGCGACTACGACCGATCCCGAGAAAGAGACGAAAGGCGGCGAG
GAGACGACTGGAATGACCGGGAGTGGGACCGGGGCCGGGAACGCCGCAGTCGGGGTGAATATCG
AGACTATGACCGGAATCGTCGGGAGCGCTTCTCTCCTCCGCGCCATGAGCTCAGCCCCCCACAG
AAGCGCCTGAGGCGGGACTGGGATGAGCACAGCTCTGACCCATACCACAGTGGCTATGACATGC
CGTATGCTGGGGGTGGTGGGGGCCCAACTTATGGCCCTCCTCAGCCCTGGGGCCACCCAGATGT
ACACATCATGCAGCACCACGTACTGCCTATCCAGGCCAGGCTGGGCAGCATCGCTGAGATTGAC
CTAGGTGTGCCGCCACCGGTGATGAAGACCTTCAAAGAGTTCCTCCTATCGCTGGATGACTCTG
TGGATGAGACCGAGGCTGTCAAACGCTATAATGATTACAAACTGGATTTTCGCAGGCAGCAGAT
GCAGGATTTTTTCCTGGCTCATAAAGATGAGGAGTGGTTTCGGTCTAAGTACCACCCAGATGAG
GTGGGGAAGCGTAGGCAGGAGGCCCGGGGGGCCCTGCAAAACCGACTGAGGGTATTCCTGTCGC
TTATGGAGAGTGGCTGGTTTGATAATCTCCTCCTGGACATAGACCGAGCTGACGCCATTGTCAA
GATGTTGGATGCTGCTGTGATTAAGATGGAAGGGGGCACAGAGAATGATCTACGCATCCTGGAG
CAGGAGGAGGAGGAGGAGCAGGCAGGAAAGCCTGGGGAGCCCAACAAGAAAGAGGAAGGCCGGG
CTGGACCAGGCCTGGGGGATGGAGAGCGCAAGGCCAGTGATAAGGATGACAAGAAAGAAGAGGG
CAAACAGGCTGAAAACGATAGTTCCAATGACGATAAAACTAAGAAGTCCGAGGGTGATGGGGAC
AAGGAAGAGAAGAAGGAAGACTCAGAGAAGGAAGCCAAAAAGAGTAGTAAGAAACGAAACAGGA
AACACAGCGGTGATGACAGCTTTGACGAAGGCAGTGTGTCGGAGTCGGAGTCGGAGTCTGAGAG
TGGCCATGCTGAGGAGGAGAAGGAAGAGGCTGAAGAAGCACTAAAGGAGAAGGAGAAGCCCAAA
GAGGAGGACAGGGAGAAGCCCAAGGACGCTGCCGGGCTGGAGTGCAAGCCCCGGCCCCTTCATA
AGACCTGTTCCCTCTTCATGCGCAACATCGCGCCCAACATCTCCCGGGCTGAGATCATCTCTCT
TTGTAAACGGTACCCAGGCTTTATGCGTGTAGCACTGTCGGAGCCTCAACCCGAGAGGAGGTTT
TTCCGTCGTGGCTGGGTGACCTTTGACCGCAGCGTTAATATTAAAGAGATCTGTTGGAACCTGC
AGAATATCCGACTCCGGGAATGTGAACTGAGCCCCGGTGTGAACAGAGACCTGACTCGTCGTGT
CCGCAACATCAACGGCATTACACAGCACAAACAGATAGTGCGCAATGACATCAAGCTGGCAGCC
AAGCTGATCCATACACTGGATGACAGGACTCAGCTCTGGGCCTCTGAGCCTGGGACACCTCCTC
TGCCAACAAGTCTGCCTTCGCAAAACCCAATATTGAAGAATATCACTGACTACCTGATTGAGGA
AGTGAGTGCTGAGGAAGAGGAGCTGCTGGGGAGCAGTGGAGGGGCCCCCCCAGAGGAGCCGCCT
AAGGAAGGGAACCCAGCAGAGATCAACGTGGAACGGGACGAGAAACTGATCAAGGTGTTGGACA
AGCTTCTTCTCTATTTGCGCATCGTACATTCCTTGGATTATTACAACACCTGCGAGTACCCCAA
TGAGGACGAGATGCCCAATCGTTGTGGCATCATCCACGTTCGGGGGCCCATGCCTCCCAATCGA
ATCAGTCATGGAGAAGTGTTGGAGTGGCAGAAGACCTTTGAGGAGAAGCTGACTCCACTACTCA
GTGTGCGGGAATCCCTCTCAGAGGAAGAGGCTCAGAAGATGGGTCGCAAGGACCCTGAGCAAGA
AGTGGAAAAGTTTGTCACCTCGAACACCCAGGAACTGGGCAAGGATAAGTGGCTGTGTCCTCTC
AGTGGCAAGAAGTTTAAGGGCCCTGAATTTGTTCGCAAACATATCTTCAACAAGCATGCAGAGA
AGATTGAGGAAGTAAAGAAAGAGGTGGCATTTTTTAACAACTTCCTCACGGATGCTAAGCGCCC
AGCTCTGCCTGAAATTAAGCCAGCTCAGCCACCTGGCCCTGCCCAGAGCTTGACCCCGGGACTC
CCCTACCCACACCAGACTCCCCAGGGCCTGATGCCCTATGGTCAGCCCCGGCCGCCCATCTTGG
GCTATGGAGCGGGTGCTGTCCGCCCTGCAGTCCCCACAGGAGGGCCTCCATATCCGCATGCCCC
ATATGGTGCTGGCCGAGGGAACTATGATGCCTTTCGAGGCCAGGGTGGTTATCCTGGGAAACCT
CGCAACAGGATGGTTCGTGGAGACCCAAGGGCCATTGTGGAATATCGTGATCTGGATGCCCCCG
ATGATGTTGATTTCTTTTGAGCCGTGTCCCATCCCCCATTCCTATCATCTGTAATTGTGATTGC
CCTGTCCCATCAGCTGAGAATTTTTTTTTGTACGTTCAGACATACTGCCAATAAAAGCACTTCA
GTAGTGA

hide sequence

RefSeq Acc Id:

XM_013360047 ⟹ XP_013215501

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	133,181,032 - 133,193,250 (-)	NCBI
SpeTri2.0	NW_004936543	843,144 - 855,491 (+)	NCBI

Sequence:

show sequence

ATTTTCCCCTCTTCGCGGCGCTTTGGTTCCAGTTCGGGCCGCGCGGGGCTCGTTTGTGGTCGGG
TCAGATCTCTGCCCGTGACGCAGGCGCAGCGCCAGCGGAGTGCGCTACCGCCCATTCTCTGTGG
TCTCCCTCTCCTCCCCTGTTTTCGGCCCCCTGGCTGAGAGCCCCGCGCCTCGCTCTCACCCTCT
GCGCCTCCCTCGTCGCGCGCCCGTGTCGCCTGGAAGACAAGCCCGCCCTCGCGCGCGACCAACG
GCCGCGACCGCTCCCAGACCGCGCCATGGGTGACAGTGACGACGAATACGATCGAAGGCGCAGG
GACAAGTTCAGAAGAGAGCGCAGCGACTACGACCGATCCCGAGAAAGAGACGAAAGGCGGCGAG
GAGACGACTGGAATGACCGGGAGTGGGACCGGGGCCGGGAACGCCGCAGTCGGGGTGAATATCG
AGACTATGACCGGAATCGTCGGGAGCGCTTCTCTCCTCCGCGCCATGAGCTCAGCCCCCCACAG
AAGCGCCTGAGGCGGGACTGGGATGAGCACAGCTCTGACCCATACCACAGTGGCTATGACATGC
CGTATGCTGGGGGTGGTGGGGGCCCAACTTATGGCCCTCCTCAGCCCTGGGGCCACCCAGATGT
ACACATCATGCAGCACCACGTACTGCCTATCCAGGCCAGGCTGGGCAGCATCGCTGAGATTGAC
CTAGGTGTGCCGCCACCGGTGATGAAGACCTTCAAAGAGTTCCTCCTATCGCTGGATGACTCTG
TGGATGAGACCGAGGCTGTCAAACGCTATAATGATTACAAACTGGATTTTCGCAGGCAGCAGAT
GCAGGATTTTTTCCTGGCTCATAAAGATGAGGAGTGGTTTCGGTCTAAGTACCACCCAGATGAG
GTGGGGAAGCGTAGGCAGGAGGCCCGGGGGGCCCTGCAAAACCGACTGAGGGTATTCCTGTCGC
TTATGGAGAGTGGCTGGTTTGATAATCTCCTCCTGGACATAGACCGAGCTGACGCCATTGTCAA
GATGTTGGATGCTGCTGTGATTAAGATGGAAGGGGGCACAGAGAATGATCTACGCATCCTGGAG
CAGGAGGAGGAGGAGGAGCAGGCAGGAAAGCCTGGGGAGCCCAACAAGAAAGAGGAAGGCCGGG
CTGGACCAGGCCTGGGGGATGGAGAGCGCAAGGCCAGTGATAAGGATGACAAGAAAGAAGAGGG
CAAACAGGCTGAAAACGATAGTTCCAATGACGATAAAACTAAGAAGTCCGAGGGTGATGGGGAC
AAGGAAGAGAAGAAGGAAGACTCAGAGAAGGAAGCCAAAAAGAGTAGTAAGAAACGAAACAGGA
AACACAGCGGTGATGACAGCTTTGACGAAGGCAGTGTGTCGGAGTCGGAGTCGGAGTCTGAGAG
TGGCCATGCTGAGGAGGAGAAGGAAGAGGCTGAAGAAGCACTAAAGGAGAAGGAGAAGCCCAAA
GAGGAGGACAGGGAGAAGCCCAAGGACGCTGCCGGGCTGGAGTGCAAGCCCCGGCCCCTTCATA
AGACCTGTTCCCTCTTCATGCGCAACATCGCGCCCAACATCTCCCGGGCTGAGATCATCTCTCT
TTGTAAACGGTACCCAGGCTTTATGCGTGTAGCACTGTCGGAGCCTCAACCCGAGAGGAGGTTT
TTCCGTCGTGGCTGGGTGACCTTTGACCGCAGCGTTAATATTAAAGAGATCTGTTGGAACCTGC
AGAATATCCGACTCCGGGAATGTGAACTGAGCCCCGGTGTGAACAGAGACCTGACTCGTCGTGT
CCGCAACATCAACGGCATTACACAGCACAAACAGATAGTGCGCAATGACATCAAGCTGGCAGCC
AAGCTGATCCATACACTGGATGACAGGACTCAGCTCTGGGCCTCTGAGCCTGGGACACCTCCTC
TGCCAACAAGTCTGCCTTCGCAAAACCCAATATTGAAGAATATCACTGACTACCTGATTGAGGA
AGTGAGTGCTGAGGAAGAGGAGCTGCTGGGGAGCAGTGGAGGGGCCCCCCCAGAGGAGCCGCCT
AAGGAAGGGAACCCAGCAGAGATCAACGTGGAACGGGACGAGAAACTGATCAAGGTGTTGGACA
AGCTTCTTCTCTATTTGCGCATCGTACATTCCTTGGATTATTACAACACCTGCGAGTACCCCAA
TGAGGACGAGATGCCCAATCGTTGTGGCATCATCCACGTTCGGGGGCCCATGCCTCCCAATCGA
ATCAGTCATGGAGAAGTGTTGGAGTGGCAGAAGACCTTTGAGGAGAAGCTGACTCCACTACTCA
GTGTGCGGGAATCCCTCTCAGAGGAAGAGGCTCAGAAGATGGGTCGCAAGGACCCTGAGCAAGA
AGTGGAAAAGTTTGTCACCTCGAACACCCAGGAACTGGGCAAGGATAAGTGGCTGTGTCCTCTC
AGTGGCAAGAAGTTTAAGGGCCCTGAATTTGTTCGCAAACATATCTTCAACAAGCATGCAGAGA
AGATTGAGGAAGTAAAGAAAGAGGTGGCATTTTTTAACAACTTCCTCACGGATGCTAAGCGCCC
AGCTCTGCCTGAAATTAAGCCAGCTCAGCCACCTGGCCCTGCCCAGATACTCCCCCCAGGCTTG
ACCCCGGGACTCCCCTACCCACACCAGACTCCCCAGGGCCTGATGCCCTATGGTCAGCCCCGGC
CGCCCATCTTGGGCTATGGAGCGGGTGCTGTCCGCCCTGCAGTCCCCACAGGAGGGCCTCCATA
TCCGCATGCCCCATATGGTGCTGGCCGAGGGAACTATGATGCCTTTCGAGGCCAGGGTGGTTAT
CCTGGGAAACCTCGCAACAGGATGGTTCGTGGAGACCCAAGGGCCATTGTGGAATATCGTGATC
TGGATGCCCCCGATGATGTTGATTTCTTTTGAGCCGTGTCCCATCCCCCATTCCTATCATCTGT
AATTGTGATTGCCCTGTCCCATCAGCTGAGAATTTTTTTTTGTACGTTCAGACATACTGCCAAT
AAAAGCACTTCAGTAGTGA

hide sequence

RefSeq Acc Id:

XM_040278104 ⟹ XP_040134038

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	133,181,833 - 133,193,250 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005328534	(Get FASTA)	NCBI Sequence Viewer
	XP_013215501	(Get FASTA)	NCBI Sequence Viewer
	XP_040134038	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000012353.3
GenBank Protein	KAG3259872	(Get FASTA)	NCBI Sequence Viewer
	KAG3259873	(Get FASTA)	NCBI Sequence Viewer
	KAG3259874	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013215501 ⟸ XM_013360047

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGDSDDEYDRRRRDKFRRERSDYDRSRERDERRRGDDWNDREWDRGRERRSRGEYRDYDRNRRE
RFSPPRHELSPPQKRLRRDWDEHSSDPYHSGYDMPYAGGGGGPTYGPPQPWGHPDVHIMQHHVL
PIQARLGSIAEIDLGVPPPVMKTFKEFLLSLDDSVDETEAVKRYNDYKLDFRRQQMQDFFLAHK
DEEWFRSKYHPDEVGKRRQEARGALQNRLRVFLSLMESGWFDNLLLDIDRADAIVKMLDAAVIK
MEGGTENDLRILEQEEEEEQAGKPGEPNKKEEGRAGPGLGDGERKASDKDDKKEEGKQAENDSS
NDDKTKKSEGDGDKEEKKEDSEKEAKKSSKKRNRKHSGDDSFDEGSVSESESESESGHAEEEKE
EAEEALKEKEKPKEEDREKPKDAAGLECKPRPLHKTCSLFMRNIAPNISRAEIISLCKRYPGFM
RVALSEPQPERRFFRRGWVTFDRSVNIKEICWNLQNIRLRECELSPGVNRDLTRRVRNINGITQ
HKQIVRNDIKLAAKLIHTLDDRTQLWASEPGTPPLPTSLPSQNPILKNITDYLIEEVSAEEEEL
LGSSGGAPPEEPPKEGNPAEINVERDEKLIKVLDKLLLYLRIVHSLDYYNTCEYPNEDEMPNRC
GIIHVRGPMPPNRISHGEVLEWQKTFEEKLTPLLSVRESLSEEEAQKMGRKDPEQEVEKFVTSN
TQELGKDKWLCPLSGKKFKGPEFVRKHIFNKHAEKIEEVKKEVAFFNNFLTDAKRPALPEIKPA
QPPGPAQILPPGLTPGLPYPHQTPQGLMPYGQPRPPILGYGAGAVRPAVPTGGPPYPHAPYGAG
RGNYDAFRGQGGYPGKPRNRMVRGDPRAIVEYRDLDAPDDVDFF

hide sequence

RefSeq Acc Id:	XP_005328534 ⟸ XM_005328477
- Peptide Label:	isoform X2
- UniProtKB:	I3MLP1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGDSDDEYDRRRRDKFRRERSDYDRSRERDERRRGDDWNDREWDRGRERRSRGEYRDYDRNRRE RFSPPRHELSPPQKRLRRDWDEHSSDPYHSGYDMPYAGGGGGPTYGPPQPWGHPDVHIMQHHVL PIQARLGSIAEIDLGVPPPVMKTFKEFLLSLDDSVDETEAVKRYNDYKLDFRRQQMQDFFLAHK DEEWFRSKYHPDEVGKRRQEARGALQNRLRVFLSLMESGWFDNLLLDIDRADAIVKMLDAAVIK MEGGTENDLRILEQEEEEEQAGKPGEPNKKEEGRAGPGLGDGERKASDKDDKKEEGKQAENDSS NDDKTKKSEGDGDKEEKKEDSEKEAKKSSKKRNRKHSGDDSFDEGSVSESESESESGHAEEEKE EAEEALKEKEKPKEEDREKPKDAAGLECKPRPLHKTCSLFMRNIAPNISRAEIISLCKRYPGFM RVALSEPQPERRFFRRGWVTFDRSVNIKEICWNLQNIRLRECELSPGVNRDLTRRVRNINGITQ HKQIVRNDIKLAAKLIHTLDDRTQLWASEPGTPPLPTSLPSQNPILKNITDYLIEEVSAEEEEL LGSSGGAPPEEPPKEGNPAEINVERDEKLIKVLDKLLLYLRIVHSLDYYNTCEYPNEDEMPNRC GIIHVRGPMPPNRISHGEVLEWQKTFEEKLTPLLSVRESLSEEEAQKMGRKDPEQEVEKFVTSN TQELGKDKWLCPLSGKKFKGPEFVRKHIFNKHAEKIEEVKKEVAFFNNFLTDAKRPALPEIKPA QPPGPAQSLTPGLPYPHQTPQGLMPYGQPRPPILGYGAGAVRPAVPTGGPPYPHAPYGAGRGNY DAFRGQGGYPGKPRNRMVRGDPRAIVEYRDLDAPDDVDFF hide sequence

RefSeq Acc Id:	XP_040134038 ⟸ XM_040278104
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSSTOP00000012353 ⟸ ENSSTOT00000013783

Protein Domains

SERRATE/Ars2 C-terminal SERRATE/Ars2 N-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000013776	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000013783.3	UniProtKB/TrEMBL
InterPro	RBD_domain_sf	UniProtKB/TrEMBL
	SE/Ars2	UniProtKB/TrEMBL
	SERRATE/Ars2_C	UniProtKB/TrEMBL
	SERRATE/Ars2_N	UniProtKB/TrEMBL
NCBI Gene	Srrt	ENTREZGENE
PANTHER	PTHR13165	UniProtKB/TrEMBL
	SERRATE RNA EFFECTOR MOLECULE HOMOLOG	UniProtKB/TrEMBL
Pfam	ARS2	UniProtKB/TrEMBL
	SERRATE_Ars2_N	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	I3MLP1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD