Eau2 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Eau2 (Experimental allergic uveoretinitis QTL 2) Rattus norvegicus

Symbol: Eau2
Name: Experimental allergic uveoretinitis QTL 2
RGD ID: 61331
Trait: uvea integrity trait   (VT:0010551)    
Measurement Type: experimental autoimmune uveitis score   (CMO:0001504)    
LOD Score: Not Available
P Value: 5.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2128,525,423 - 28,064,601RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01210,256,890 - 31,723,732RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01212,361,595 - 33,647,566RGDRnor5.0
RGSC_v3.4121 - 29,130,348RGDRGSC3.4
RGSC_v3.1120 - 28,993,736RGD
Cross Type: F2
Strains Crossed: LEW F344/NRrrc 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
F344/NRrrc  (IEA)
LEW  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Differentially expressed genes in MHC-compatible rat strains that are susceptible or resistant to experimental autoimmune uveitis. Mattapallil MJ, et al., Invest Ophthalmol Vis Sci. 2008 May;49(5):1957-70. Epub 2008 Feb 15.
2. Common genetic determinants of uveitis shared with other autoimmune disorders. Mattapallil MJ, etal., J Immunol. 2008 May 15;180(10):6751-9.
3. Identification of genomic regions controlling experimental autoimmune uveoretinitis in rats. Sun SH, etal., Int Immunol 1999 Apr;11(4):529-34
Related QTLs

Related QTL Description Reference
Pia4 interacts with RGD:61073
Cia12 interacts with RGD:61073


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
68333Gpr12G protein-coupled receptor 121285227098525875Rat
41279517LOC120095888uncharacterized LOC1200958881285436408546160Rat
41348606LOC120095929uncharacterized LOC1200959291285469118553407Rat
1592807Wasf3WASP family member 31285638058660799Rat
41169375LOC12009588960S ribosomal protein L29-like1286316048632206Rat
1590340LOC684427similar to Histidine triad nucleotide-binding protein 1 (Adenosine 5-monophosphoramidase) (Protein kinase C inhibitor 1) (Protein kinase C-interacting protein 1) (PKCI-1)1286684388668940Rat
41384695LOC120095890uncharacterized LOC1200958901286852558704812Rat
1560888Cdk8cyclin-dependent kinase 81287371988805026Rat
1306092Rnf6ring finger protein 61288167778826870Rat
41251146LOC120095891uncharacterized LOC1200958911288334888835122Rat
41153330LOC120095930uncharacterized LOC1200959301288433128846055Rat
628709Cyp3a18cytochrome P450, family 3, subfamily a, polypeptide 181288805288930382Rat
1595705Cyp3a73cytochrome P450, family 3, subfamily a, polypeptide 731289555938995061Rat
1583820Hsp90aa1-ps8heat shock protein 90 alpha family class A member 1, pseudogene 81289949248997727Rat
9074083LOC103691023uncharacterized LOC1036910231290152209042818Rat
1597309Cyp3a71-pscytochrome P450, family 3, subfamily a, polypeptide 71, pseudogene1291363189151198Rat
708379Cyp3a2cytochrome P450, family 3, subfamily a, polypeptide 21292079869230038Rat
628626Cyp3a23-3a1cytochrome P450, family 3, subfamily a, polypeptide 23-polypeptide 11292561599285020Rat
11430784LOC10835242160S ribosomal protein L29 pseudogene1292775009278307Rat
1596095LOC690410similar to developmental pluripotency associated 4 isoform 11292861419287341Rat
1308619Zscan25zinc finger and SCAN domain containing 251293273479338206Rat
1309158Zfp655zinc finger protein 6551293499859375449Rat
1311175Zkscan5zinc finger with KRAB and SCAN domains 51293845619405763Rat
628654Zfp394zinc finger protein 3941294090479417228Rat
1596067Atp5mfATP synthase membrane subunit f1294216659428236Rat
620440Cpsf4cleavage and polyadenylation specific factor 41294297659445582Rat
1311473Ptcd1pentatricopeptide repeat domain 11294456569463508Rat
621103Bud31BUD31 homolog1294628389470387Rat
620442Pdap1PDGFA associated protein 11294706529480880Rat
2155Arpc1bactin related protein 2/3 complex, subunit 1B1294821769495772Rat
620834Arpc1aactin related protein 2/3 complex, subunit 1A1295024969525304Rat
41250024Trnap-agg80transfer RNA proline (anticodon AGG) 801295309469531026Rat
1596017Rps15al1ribosomal protein S15A-like 11295334659533899Rat
11440668LOC108352477U1 small nuclear ribonucleoprotein C pseudogene1295701889570666Rat
1594749Kpna7karyopherin subunit alpha 71295763789635247Rat
1594738Smurf1SMAD specific E3 ubiquitin protein ligase 11296350099726520Rat
1305446Trraptransformation/transcription domain-associated protein1297380069827708Rat
40977332LOC120096103small nucleolar RNA SNORA701298221599822288Rat
1563248Tmem130transmembrane protein 1301298370559862843Rat
41248887Trnas-aga12transfer RNA serine (anticodon AGA) 121299859469986026Rat
1309447Nptx2neuronal pentraxin 2121003743510048345Rat
9241109LOC103693619uncharacterized LOC103693619121015764810158685Rat
2322550LOC100360200cleavage and polyadenylation specific factor 4121021174410213512Rat
1565131RGD1565131similar to ribosomal protein L15121022718110227989Rat
40932154LOC120096089U4 spliceosomal RNA121023732610237440Rat
1308452Baiap2l1BAR/IMD domain containing adaptor protein 2 like 1121025043410339937Rat
9081796Ube2n-ps5ubiquitin-conjugating enzyme E2N, pseudogene 5121030909510314132Rat
1309187Bri3brain protein I3121034100710364655Rat
7638517LOC102554669uncharacterized LOC102554669121034904510359627Rat
1306873Tecpr1tectonin beta-propeller repeat containing 1121039158710420462Rat
3091Bhlha15basic helix-loop-helix family, member a15121042046510424641Rat
1598332Lmtk2lemur tyrosine kinase 2121042677210508750Rat
3222Ocmoncomodulin121053561910596705Rat
9185431LOC103691025elongation factor 1-gamma pseudogene121053646710537604Rat
1306410Ccz1bCCZ1 homolog B, vacuolar protein trafficking and biogenesis associated121060106610624608Rat
1311893Rsph10bradial spoke head 10 homolog B121062743410675227Rat
1305483Pms2PMS1 homolog 2, mismatch repair system component121067681910701161Rat
40982078LOC120096114small nucleolar RNA SNORA51121068966410689796Rat
1560787Aimp2aminoacyl tRNA synthetase complex-interacting multifunctional protein 2121070119410710772Rat
41251110LOC120095833uncharacterized LOC120095833121070653410708834Rat
70883Eif2ak1eukaryotic translation initiation factor 2 alpha kinase 1121071077110744597Rat
1586393Ankrd61ankyrin repeat domain 61121071890810723267Rat
7731748LOC102554825uncharacterized LOC102554825121075688710770859Rat
1585013Aldoa-ps3aldolase, fructose-bisphosphate A, pseudogene 3121077795210779290Rat
7505188LOC102554879uncharacterized LOC102554879121079362010800689Rat
1305231Usp42ubiquitin specific peptidase 42121080086410840785Rat
41127121LOC120095931collagen alpha-1(I) chain-like121080481010821511Rat
620399Cyth3cytohesin 3121084013710933792Rat
1561923Fam220afamily with sequence similarity 220, member A121099796911013962Rat
619755Rac1Rac family small GTPase 1121103702811057251Rat
1310193Daglbdiacylglycerol lipase, beta121105973211102170Rat
1304618Kdelr2KDEL endoplasmic reticulum protein retention receptor 2121113882011157117Rat
7610051LOC102554945uncharacterized LOC102554945121115721411158522Rat
1310492Grid2ipGrid2 interacting protein121116656711203765Rat
1308389Zdhhc4zinc finger DHHC-type palmitoyltransferase 4121123086411244898Rat
1584479Ints15integrator complex subunit 15121124504511260170Rat
11371857LOC108352423uncharacterized LOC108352423121125474711258556Rat
1563095Zfp853zinc finger protein 853121126612411276492Rat
1311647Zfp316zinc finger protein 316121129444511313841Rat
1564396Zfp12zinc finger protein 12121131697111330498Rat
1561076Spdye4speedy/RINGO cell cycle regulator family member E4121133726211344753Rat
7634033Spdye4-ps1speedy/RINGO cell cycle regulator family member E4, pseudogene 1121135951011373943Rat
1562875RbakRB-associated KRAB zinc finger121137531411388937Rat
7637009LOC102555525uncharacterized LOC102555525121139674711397774Rat
2322117LOC100360439ribosomal protein L36-like121140837911408767Rat
9271212LOC103693627putative olfactory receptor 10AC1121141733211425904Rat
1565135Rnf216ring finger protein 216121145475211576305Rat
41204650LOC120095834uncharacterized LOC120095834121150554911508629Rat
1583309Fscn1fascin actin-bundling protein 1121159704211610183Rat
41297723LOC120095835uncharacterized LOC120095835121160012611602621Rat
41050335LOC120095836uncharacterized LOC120095836121163259611640692Rat
628837Actbactin, beta121166311211666697Rat
1596958Fbxl18F-box and leucine-rich repeat protein 18121167453811701317Rat
11503703LOC108352424uncharacterized LOC108352424121174731011755112Rat
1307540Tnrc18trinucleotide repeat containing 18121175539211851721Rat
41235499LOC120095837uncharacterized LOC120095837121179749311801221Rat
1310545Slc29a4solute carrier family 29 member 4121185354011884660Rat
1359154Wipi2WD repeat domain, phosphoinositide interacting 2121191136911939799Rat
1306506Mmd2monocyte to macrophage differentiation-associated 2121196273312009776Rat
1306155RadilRap associating with DIL domain121202439512088540Rat
1310946Papolbpoly(A) polymerase beta121204427512046621Rat
1593125Ap5z1adaptor related protein complex 5 subunit zeta 1121209383412109043Rat
1309643Foxk1forkhead box K1121211011912175089Rat
41253801LOC120095892uncharacterized LOC120095892121219044212208375Rat
1560686Sdk1sidekick cell adhesion molecule 1121237807413363934Rat
1564193Ube2c-ps2ubiquitin-conjugating enzyme E2C, pseudogene 2121266888412669423Rat
41240022LOC120096102U6 spliceosomal RNA121303886713038969Rat
1584808Nip7-ps9nucleolar pre-rRNA processing protein NIP7, pseudogene 9121342089613421417Rat
41079527LOC120095893uncharacterized LOC120095893121343303013460245Rat
7598302LOC102547234uncharacterized LOC102547234121354778913607490Rat
41014784LOC120095894uncharacterized LOC120095894121358920213594498Rat
2323211Card11caspase recruitment domain family, member 11121362097913758115Rat
71018Gna12G protein subunit alpha 12121380558013886255Rat
1311314Amz1archaelysin family metallopeptidase 1121388653313924275Rat
1565146Brat1BRCA1-associated ATM activator 1121392888913951760Rat
1311349IqceIQ motif containing E121394329013982708Rat
1309549Ttyh3tweety family member 3121399683114025457Rat
620587LfngLFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase121403055114038996Rat
71055Grifingalectin-related inter-fiber protein121408017014082892Rat
1308214Chst12carbohydrate sulfotransferase 12121411063114129099Rat
1598146LOC679924similar to Kif19A CG9913-PB, isoform B121414416314196259Rat
41188349LOC120095895uncharacterized LOC120095895121414908814152690Rat
41182922LOC120096093U6 spliceosomal RNA121416998914170094Rat
1309018Eif3beukaryotic translation initiation factor 3, subunit B121419640314220865Rat
11502171LOC108352425uncharacterized LOC108352425121422308014265458Rat
1305791Snx8sorting nexin 8121425182914300435Rat
621080Nudt1nudix hydrolase 1121430251414309559Rat
1305944Mrm2mitochondrial rRNA methyltransferase 2121430955614314759Rat
1596881Mad1l1mitotic arrest deficient 1 like 1121432089214630750Rat
1308787Elfn1extracellular leucine-rich repeat and fibronectin type III domain containing 1121466004914725709Rat
2319950Psmg3proteasome assembly chaperone 3121480923414812347Rat
1306702Tmem184atransmembrane protein 184A121481750814833109Rat
628633MafkMAF bZIP transcription factor K121483462814856414Rat
7519900LOC102546414uncharacterized LOC102546414121484552214848118Rat
1308908Ints1integrator complex subunit 1121486131214886048Rat
1307875Micall2MICAL-like 2121489915114927949Rat
69361UncxUNC homeobox121509277915097300Rat
1562250LOC498152hypothetical protein LOC498152121512135315142294Rat
11414185Npm1-ps12nucleophosmin 1, pseudogene 12121513561915136849Rat
1310991Zfand2azinc finger AN1-type containing 2A121516160115172679Rat
1566418LOC498154hypothetical protein LOC498154121518572815289042Rat
619845Gper1G protein-coupled estrogen receptor 1121521721715222679Rat
7673409LOC102546864uncharacterized LOC102546864121522974315241457Rat
1560731Gpr146G protein-coupled receptor 146121525193615267217Rat
2325466Mir339microRNA 339121527754615277641Rat
1305193Cyp2w1cytochrome P450, family 2, subfamily w, polypeptide 1121529155215296421Rat
1305631Cox19cytochrome c oxidase assembly factor COX19121530353515313014Rat
621418Adap1ArfGAP with dual PH domains 1121532391315376110Rat
1311660Get4guided entry of tail-anchored proteins factor 4121537700915394238Rat
1359142Sun1Sad1 and UNC84 domain containing 1121539637815441277Rat
7682710LOC102547493uncharacterized LOC102547493121543065715453779Rat
1566028Dnaaf5dynein, axonemal, assembly factor 5121545363615492722Rat
3392Prkar1bprotein kinase cAMP-dependent type I regulatory subunit beta121549223315624942Rat
9133748LOC103691050uncharacterized LOC103691050121563246015636507Rat
3282Pdgfaplatelet derived growth factor subunit A121564554915667056Rat
7536442LOC10254879440S ribosomal protein S27-like121577683915778793Rat
1594158Foxl3forkhead box L3121581217715814534Rat
1311980Fam20cFAM20C, golgi associated secretory pathway kinase121582686415885423Rat
41016460Ppp1r14b-ps2protein phosphatase 1, regulatory (inhibitor) subunit 14B, pseudogene121589313815975566Rat
1566386Znf846zinc finger protein 846121597931216012933Rat
1310463Zfp68zinc finger protein 68121602605816040995Rat
1562569Rps8-ps9ribosomal protein S8, pseudogene 9121604777616048497Rat
1625997Vom2r-ps98vomeronasal 2 receptor, pseudogene 98121606460616066575Rat
41315690Spn-ps4sialophorin, pseudogene 4121609028116097302Rat
6499499Spn-ps1sialophorin, pseudogene 1121610035416101498Rat
1598204Spn-ps7sialophorin, pseudogene 7121610570516106765Rat
6499303Spn-ps2sialophorin, pseudogene 2121611083816112028Rat
2319349Spn-ps6sialophorin, pseudogene 6121611083816117345Rat
1559964MGC112692similar to Leukosialin precursor (Leucocyte sialoglycoprotein) (Sialophorin) (CD43) (W3/13 antigen)121612615016131108Rat
1598202Spn-ps8sialophorin, pseudogene 8121613127516133558Rat
1359506Spnl1sialophorin like 1121613658316147719Rat
41150475Spn-ps5sialophorin, pseudogene 5121614788516150072Rat
6497070Spn-ps3sialophorin, pseudogene 3121615474016156686Rat
1591744LOC680456similar to autism susceptibility candidate 2121619607116233257Rat
1359435Zfp157zinc finger protein 157121624823016279459Rat
1332710Or7a43-ps1olfactory receptor family 7 subfamily A member 43, pseudogene 1121628844616289236Rat
1305017Dhrsxdehydrogenase/reductase X-linked121629976816304553Rat
708472Asmtacetylserotonin O-methyltransferase121630471916309568Rat
1564640Akap17aA-kinase anchoring protein 17A121631042716315166Rat
1306877Asmtlacetylserotonin O-methyltransferase-like121631533516321607Rat
628728Il3rainterleukin 3 receptor subunit alpha121631808116323781Rat
1560288Pum3-ps3pumilio RNA-binding family member 3, pseudogene 3121635713116359221Rat
1595919Cyp3a62cytochrome P450, family 3, subfamily a, polypeptide 62121639799816433833Rat
7641109LOC102554019uncharacterized LOC102554019121642643916479103Rat
7612525LOC102554070uncharacterized LOC102554070121656636616569183Rat
41378758Fus-ps5FUS RNA binding protein, pseudogene 5121657167116577185Rat
1593752Tubb4b-ps2tubulin, beta 4B class IVb, pseudogene 2121661134416612890Rat
1584948Cbwd1-ps2COBW domain containing 1, pseudogene 2121662616216629000Rat
1562172Spry3sprouty RTK signaling antagonist 3121666318816673124Rat
621558Vamp7vesicle-associated membrane protein 7121672847716764261Rat
708392Cyp3a9cytochrome P450, family 3, subfamily a, polypeptide 9121680622216846428Rat
1595709LOC498158hypothetical LOC498158121686689516867939Rat
2319106Rpl31l4ribosomal protein L31-like 4121689311116893551Rat
727930Gjc3gap junction protein, gamma 3121689984616912309Rat
7581366Ccdc90b-ps1coiled-coil domain containing 90B, pseudogene 1121690674816908225Rat
2187Azgp1alpha-2-glycoprotein 1, zinc-binding121693099016939333Rat
41111819Rpl34-ps3ribosomal protein L34, pseudogene 3121696413416964559Rat
1560616Zkscan1zinc finger with KRAB and SCAN domains 1121696628716987680Rat
41041701LOC120095841uncharacterized LOC120095841121697612216995839Rat
9368177LOC103691088transcription elongation factor B polypeptide 1 pseudogene121698971716991140Rat
1309981Zscan21zinc finger and SCAN domain containing 21121699849617024167Rat
9205257LOC103691091NHP2-like protein 1 pseudogene121701804017019347Rat
6489147Zfp113zinc finger protein 3121702210417033776Rat
1309919Cops6COP9 signalosome subunit 6121703897917041818Rat
1303018Mcm7minichromosome maintenance complex component 7121704220717049470Rat
2325594Mir25microRNA 25121704293217043015Rat
2325459Mir93microRNA 93121704313517043221Rat
2325388Mir106bmicroRNA 106b121704334417043425Rat
1310233Ap4m1adaptor related protein complex 4 subunit mu 1121704976617055954Rat
1311608Taf6TATA-box binding protein associated factor 6121705586417064244Rat
1307636Cnpy4canopy FGF signaling regulator 4121706464217070755Rat
1306932Mblac1metallo-beta-lactamase domain containing 1121707146517072736Rat
1588255Nxpe5neurexophilin and PC-esterase domain family, member 5121709762417119700Rat
1587058LOC680825hypothetical protein LOC680825121712410417142519Rat
1587046LOC680837hypothetical protein LOC680837121715294917153791Rat
7675853LOC102551138uncharacterized LOC102551138121717846417200736Rat
1559954Nxpe5l1neurexophilin and PC-esterase domain family, member 5-like 1121718656617196784Rat
41070362LOC120095896NXPE family member 3-like121720844017225545Rat
1562319RGD1562319similar to family with sequence similarity 55, member C121723831117252723Rat
1309735Lamtor4late endosomal/lysosomal adaptor, MAPK and MTOR activator 4121725865617262478Rat
1305455Trappc14trafficking protein particle complex subunit 14121726274817267093Rat
1561105Gal3st4galactose-3-O-sulfotransferase 4121726796317276951Rat
621363Gpc2glypican 2121727787517284297Rat
621333Stag3stromal antigen 3121728467717314936Rat
1585866PvrigPVR related immunoglobulin domain containing121736372117365577Rat
1559588RGD1559588similar to cell surface receptor FDFACT121739884417404810Rat
1562930Vom2r61vomeronasal 2 receptor, 61121743891117465634Rat
1598200Vom2r62vomeronasal 2 receptor, 62121752466217542226Rat
11466946Vmn2r116l-ps4vomeronasal 2, receptor 116 like, pseudogene 4121758263517615711Rat
1564022Vom2r63vomeronasal 2 receptor, 63121762514117652806Rat
1562525RGD1562525similar to cell surface receptor FDFACT121767486017682715Rat
1566006RGD1566006similar to paired immunoglobin-like type 2 receptor beta121772021317732681Rat
41122052Rap1b-ps1RAP1B, member of RAS oncogene family, pseudogene 1121773295517734674Rat
40977068LOC120095898paired immunoglobulin-like type 2 receptor beta121774431517756074Rat
41102335Rap1b-ps2RAP1B, member of RAS oncogene family, pseudogene 2121775685017757928Rat
1561143Pilrb2paired immunoglobin like type 2 receptor beta 2121777304717779527Rat
6497409Pilrapaired immunoglobin-like type 2 receptor alpha121778716917798149Rat
6497217Zcwpw1l1zinc finger CW-type and PWWP domain containing 1-like 1121779865017812208Rat
7553419LOC102554231paired immunoglobulin-like type 2 receptor alpha-like121782366217828030Rat
1598199Vom2r-ps104vomeronasal 2 receptor, pseudogene 104121786250917880232Rat
41389804Vmn2r116l-ps7vomeronasal 2, receptor 116 like, pseudogene 7121790355317929309Rat
41145634Vmn2r116l-ps10vomeronasal 2, receptor 116 like, pseudogene 10121794226217956785Rat
1641975Vom2r-ps107vomeronasal 2 receptor, pseudogene 107121801328818014187Rat
41105168Vmn2r116l-ps11vomeronasal 2, receptor 116 like, pseudogene 11121803529818043422Rat
1583509LOC681182similar to paired immunoglobin-like type 2 receptor beta121808141018089619Rat
41031955Pilrb-ps5paired immunoglobin-like type 2 receptor beta, pseudogene 5121818675818190046Rat
1561730RGD1561730similar to cell surface receptor FDFACT121821053518216471Rat
41017732Trnag-acc1transfer RNA glycine (anticodon ACC) 1121822243818222512Rat
41111820LOC120095902paired immunoglobulin-like type 2 receptor beta121822248018237114Rat
1559499Pilrb-ps7paired immunoglobin-like type 2 receptor beta, pseudogene 7121825144218257788Rat
1626043Vom2r-ps103vomeronasal 2 receptor, pseudogene 103121829041018300223Rat
41201467Vmn2r116l-ps8vomeronasal 2, receptor 116 like, pseudogene 8121831329718350370Rat
1626049Vom2r-ps101vomeronasal 2 receptor, pseudogene 101121837651218387463Rat
1584665Vom2r64vomeronasal 2 receptor, 64121841940918449218Rat
1625996Vom2r-ps100vomeronasal 2 receptor, pseudogene 100121846688518480996Rat
1584675Pilrbpaired immunoglobin-like type 2 receptor beta121851616118525375Rat
1563400RGD1563400similar to paired immunoglobin-like type 2 receptor beta121856684118580286Rat
6496729Pilrb-ps1paired immunoglobin-like type 2 receptor beta, pseudogene 1121860115618607655Rat
1560262Pilrb-ps6paired immunoglobin-like type 2 receptor beta, pseudogene 6121860905518630916Rat
1596422LOC685275similar to paired immunoglobin-like type 2 receptor beta121863684418651872Rat
41169192LOC120095853uncharacterized LOC120095853121865363018661701Rat
40963637Pilrb-ps4paired immunoglobin-like type 2 receptor beta, pseudogene 4121870450918710373Rat
41202788LOC120095904uncharacterized LOC120095904121872580418728687Rat
11492645Pilrb-ps2paired immunoglobin-like type 2 receptor beta, pseudogene 2121877185018777708Rat
1597726LOC685157similar to paired immunoglobin-like type 2 receptor beta121879284018799391Rat
40942766Pilrb-ps3paired immunoglobin-like type 2 receptor beta, pseudogene 3121880167318811757Rat
7556717LOC102546903paired immunoglobulin-like type 2 receptor beta-2-like121881408518837515Rat
9261510LOC103693637ras-related protein Rap-1b pseudogene121882114618821924Rat
41314880Rap1b-ps3RAP1B, member of RAS oncogene family, pseudogene 3121883809818839898Rat
41173580LOC120095906paired immunoglobulin-like type 2 receptor beta121885345218861001Rat
6498401LOC100910497paired immunoglobulin-like type 2 receptor alpha-like121886630118881290Rat
1305405Zcwpw1zinc finger CW-type and PWWP domain containing 1121888062518910713Rat
1560550Mepcemethylphosphate capping enzyme121891179618916515Rat
1584367Ppp1r35protein phosphatase 1, regulatory subunit 35121891590918919253Rat
11442159Spacdrsperm acrosome developmental regulator121893060818936787Rat
1584380Tsc22d4TSC22 domain family, member 4121893915018952008Rat
1310964Nyap1neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1121895619218967624Rat
1591278Echdc2-ps1enoyl CoA hydratase domain containing 2, pseudogene 1121898935318992172Rat
1306590Agfg2ArfGAP with FG repeats 2121901222819048433Rat
69317Irs3insulin receptor substrate 3121905314819055286Rat
1562406Sap25Sin3A-associated protein 25121905576219057425Rat
1306145Lrch4leucine rich repeats and calponin homology domain containing 4121905758219072573Rat
1305095Fbxo24F-box protein 24121907266819083067Rat
11511026LOC108352432uncharacterized LOC108352432121907583919095304Rat
3270Pcolceprocollagen C-endopeptidase enhancer121908419119090508Rat
1304973Mospd3motile sperm domain containing 3121909520319100303Rat
1310152Tfr2transferrin receptor 2121910767319124622Rat
1307763Actl6bactin-like 6B121912488719141419Rat
69319Gnb2G protein subunit beta 2121915900219164021Rat
1309933Gigyf1GRB10 interacting GYF protein 1121916607019181570Rat
1306413Pop7POP7 homolog, ribonuclease P/MRP subunit121918938419190425Rat
2559Epoerythropoietin121920425819207948Rat
1305044Zanzonadhesin121921501819322789Rat
1583193Ephb4EPH receptor B4121932641119351667Rat
9263674LOC103691283uncharacterized LOC103691283121936730619368987Rat
620747Slc12a9solute carrier family 12, member 9121936899019385881Rat
1583180Trip6thyroid hormone receptor interactor 6121938621219390619Rat
1591241Srrtserrate, RNA effector molecule121939257819406098Rat
69313Acheacetylcholinesterase121940735919413713Rat
41199718LOC120095907uncharacterized LOC120095907121941722819420134Rat
40994669LOC120095953mucin-3A-like121943221419442687Rat
6485223LOC100912943mucin-3B-like121945067919454753Rat
41045133Muc3amucin 3A, cell surface associated121945578319462165Rat
41019124LOC120095954mucin-12-like121948241219485946Rat
40984024LOC120095955mucin-12-like121948604119493995Rat
41257084LOC120095957mucin-12-like121949503719498028Rat
41109471LOC120095909uncharacterized LOC120095909121950066119501189Rat
41386117LOC120095958spore coat protein SP96-like121950835319521577Rat
3124Muc3mucin 3121952725119536924Rat
40958426Trim56tripartite motif containing 56121954491319567324Rat
41120780LOC120095911uncharacterized LOC120095911121954803519556511Rat
3249Serpine1serpin family E member 1121960127219611657Rat
1305911Ap1s1adaptor related protein complex 1 subunit sigma 1121962526719635792Rat
69399VgfVGF nerve growth factor inducible121963731319645123Rat
1592588Mogat3monoacylglycerol O-acyltransferase 3121966870319669420Rat
631339Plod3procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3121967638419686945Rat
4888576Mir702microRNA 702121968180919681915Rat
2322870Znhit1zinc finger, HIT-type containing 1121968660619692880Rat
1310678Cldn15claudin 15121969816919708419Rat
1306668Fis1fission, mitochondrial 1121970855819723392Rat
6496734LOC100910802uncharacterized LOC100910802121974235519757486Rat
1305370Ift22intraflagellar transport 22121975907219768859Rat
1591401Col26a1collagen type XXVI alpha 1 chain121979269319938556Rat
1561258Myl10myosin light chain 10121996917419982627Rat
41397405LOC120095912uncharacterized LOC120095912122004641720053457Rat
620618Cux1cut-like homeobox 1122010706220425868Rat
69284Sh2b2SH2B adaptor protein 2122042705720456845Rat
1595708Prkrip1PRKR interacting protein 1122047080220491789Rat
1310213Orai2ORAI calcium release-activated calcium modulator 2122050030820520428Rat
1308608Alkbh4alkB homolog 4, lysine demethylase122052403020529947Rat
1359442Lrwd1leucine-rich repeats and WD repeat domain containing 1122053007220543078Rat
1310198Polr2jRNA polymerase II subunit J122054303820548590Rat
1565457Rasa4RAS p21 protein activator 4122055280520580177Rat
1598237Upk3bl1uroplakin 3B like 1122061035320616366Rat
41214653LOC120095913uncharacterized LOC120095913122062250520633507Rat
1309615Upk3buroplakin 3B122062949120638193Rat
1561790Dtx2deltex E3 ubiquitin ligase 2122064328920682908Rat
41148403LOC120096097U6 spliceosomal RNA122064436520644470Rat
620606Zp3zona pellucida glycoprotein 3122069054720697513Rat
1306970Ssc4dscavenger receptor cysteine rich family member with 4 domains122070293120723732Rat
40927760LOC120096095U6 spliceosomal RNA122072241820722523Rat
62002Ywhagtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma122074450020772828Rat
41184641Rps11-ps6ribosomal protein S11, pseudogene 6122078737120791987Rat
61306Hspb1heat shock protein family B (small) member 1122079401420795675Rat
1587868Srrm3serine/arginine repetitive matrix 3122080887820878557Rat
11499585LOC108352435uncharacterized LOC108352435122088043520891489Rat
619719Mdh2malate dehydrogenase 2122089426920907225Rat
1305845Styxl1serine/threonine/tyrosine interacting-like 1122090741020940232Rat
1311474Tmem120atransmembrane protein 120A122094224320950908Rat
68335Porcytochrome p450 oxidoreductase122095105820999198Rat
1308231Rhbdd2rhomboid domain containing 2122104360521054305Rat
1310245Ccl24C-C motif chemokine ligand 24122110083521104832Rat
1587817Ccl26C-C motif chemokine ligand 26122110938421114336Rat
1583828Rps13-ps4ribosomal protein S13, pseudogene 4122112530921125763Rat
620305Hip1huntingtin interacting protein 1122113331921267796Rat
41306277LOC120095918uncharacterized LOC120095918122115005021151606Rat
620680Pom121POM121 transmembrane nucleoporin122127371321294299Rat
41275322LOC120095917uncharacterized LOC120095917122127463921276764Rat
1309268Nsun5NOP2/Sun RNA methyltransferase 5122129363721299319Rat
631346Trim50tripartite motif-containing 50122130078421317668Rat
1308926Fkbp6FKBP prolyl isomerase family member 6122131825121390350Rat
41198486LOC120095916uncharacterized LOC120095916122139043821401115Rat
628817Fzd9frizzled class receptor 9122142708421429398Rat
1597089Baz1bbromodomain adjacent to zinc finger domain, 1B122143198521489956Rat
41064979LOC1200960805S ribosomal RNA122147615321476268Rat
1597090Bcl7bBAF chromatin remodeling complex subunit BCL7B122149685621510202Rat
1595038Tbl2transducin (beta)-like 2122151760021532114Rat
620400MlxiplMLX interacting protein-like122154296421577120Rat
1587769Vps37dVPS37D subunit of ESCRT-I122160921021614669Rat
1595783Dnajc30DnaJ heat shock protein family (Hsp40) member C30122162832321629389Rat
1589742Bud23BUD23, rRNA methyltransferase and ribosome maturation factor122162955121640758Rat
41383089LOC120096124small Cajal body-specific RNA 20122163961521639747Rat
69430Stx1asyntaxin 1A122164197121670022Rat
1585479Abhd11-as1ABHD11 antisense RNA 1 (tail to tail)122168111821682106Rat
1304681Abhd11abhydrolase domain containing 11122168220621685331Rat
68425Cldn3claudin 3122170853821710010Rat
41401627Rps13-ps6ribosomal protein S13, pseudogene 6122171220021715310Rat
1585449Arpc5l-ps3actin related protein 2/3 complex, subunit 5-like, pseudogene 3122173477521735623Rat
1307932Cldn4claudin 4122175163821753436Rat
1588881Mettl27methyltransferase like 27122175754521766698Rat
9242288LOC103691506claudin-4-like122177606621776722Rat
41255513LOC120095920uncharacterized LOC120095920122179357721800351Rat
1561903Tmem270transmembrane protein 270122179363121798723Rat
7520086LOC102553484uncharacterized LOC102553484122196238721969793Rat
67394Elnelastin122196854422011929Rat
62055Limk1LIM domain kinase 1122202669722060605Rat
11405154LOC10835248440S ribosomal protein S14 pseudogene122206842522069114Rat
1359222Eif4heukaryotic translation initiation factor 4H122208315522099876Rat
631397Lat2linker for activation of T cells family, member 2122210416322118294Rat
621198Rfc2replication factor C subunit 2122212044922133576Rat
7689818LOC102553558uncharacterized LOC102553558122213845522140424Rat
1583827Chmp5-ps3charged multivesicular body protein 5, pseudogene 3122214657622147671Rat
1563240Ervfrd-1endogenous retrovirus group FRD member 1, envelope122215121122158264Rat
62019Clip2CAP-GLY domain containing linker protein 2122216304422227023Rat
620856Gtf2ird1GTF2I repeat domain containing 1122225411322361052Rat
727961Gtf2igeneral transcription factor II I122240093322476243Rat
9311981LOC103691302uncharacterized LOC103691302122247302922487591Rat
61307Ncf1neutrophil cytosolic factor 1122248538222494647Rat
1307435Gtf2ird2GTF2I repeat domain containing 2122249836022551293Rat
1307558Rcc1lRCC1 like122254312522574042Rat
1304672Castor2cytosolic arginine sensor for mTORC1 subunit 2122257750422620182Rat
7587101LOC102553721uncharacterized LOC102553721122262846522635776Rat
40965707LOC120096096U6 spliceosomal RNA122276037022760469Rat
6488308Rpsa-ps7ribosomal protein SA, pseudogene 7122279671522803092Rat
40951983LOC120095854uncharacterized LOC120095854122280502222815570Rat
41319237LOC120095855uncharacterized LOC120095855122285966222867915Rat
41001183LOC120095924uncharacterized LOC120095924122293268922945250Rat
40992997LOC120095926uncharacterized LOC120095926122322144823319564Rat
41373117LOC120095927uncharacterized LOC120095927122341717523434982Rat
11435442LOC108352438uncharacterized LOC108352438122366574023707081Rat
7489014Mir6322microRNA 6322122378000123780119Rat
41166140Rps29-ps4ribosomal protein S29, pseudogene 4122379983923800137Rat
41344750Pnp-ps1purine nucleoside phosphorylase, pseudogene 1122389459123895813Rat
2323959Auts2activator of transcription and developmental regulator AUTS2122410418725194123Rat
40964822LOC120095842uncharacterized LOC120095842122496547324968048Rat
1563452Galnt17polypeptide N-acetylgalactosaminyltransferase 17122532383925780036Rat
7684404LOC102550645uncharacterized LOC102550645122580013725805997Rat
1305843Caln1calneuron 1122581174326303670Rat
41342002Rps15a-ps5ribosomal protein S15a, pseudogene 5122613335726138348Rat
41391291Trnas-aga21transfer RNA serine (anticodon AGA) 21122614549226145564Rat
1310420Tyw1tRNA-yW synthesizing protein 1 homolog122633202026418286Rat
41132218Ifitm1-ps2interferon induced transmembrane protein 1, pseudogene 2122639569326395896Rat
1311043SbdsSbds, ribosome maturation factor122642041026429650Rat
1303319Tmem248transmembrane protein 248122643077526457105Rat
41387608Trnal-aag19transfer RNA leucine (anticodon AAG) 19122645849526458569Rat
1307295Rabgef1RAB guanine nucleotide exchange factor 1122645919026503790Rat
1582914Kctd7potassium channel tetramerization domain containing 7122652096926532327Rat
1308473Tpst1tyrosylprotein sulfotransferase 1122654453626605706Rat
620753CrcpCGRP receptor component122662396826659756Rat
619974Aslargininosuccinate lyase122665966426677136Rat
41266323LOC120096116small nucleolar RNA SNORA17122668094826681081Rat
41387478Trnat-agu12transfer RNA threonine (anticodon AGU) 12122668978826689862Rat
1598198Rps9-ps15ribosomal protein S9, pseudogene 15122669235326698674Rat
41014265LOC120096125small nucleolar RNA SNORA81122669321226693392Rat
41161287LOC120096127small nucleolar RNA SNORA81122669615026696237Rat
2772Gusbglucuronidase, beta122670119126714718Rat
1303249Vkorc1l1vitamin K epoxide reductase complex, subunit 1-like 1122671795926768193Rat
41114360Trnaa-agc84transfer RNA alanine (anticodon AGC) 84122676349126763563Rat
1560258Nupr2nuclear protein 2, transcriptional regulator122680012326803228Rat
1559988Chchd2l2coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 2122680765226813706Rat
7646482LOC102555557MLV-related proviral Env polyprotein-like122682069126822694Rat
6496638Chchd2l1coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 1122682873826834762Rat
3325Phkg1phosphorylase kinase catalytic subunit gamma 1122683882226854547Rat
1563253Sumf2sulfatase modifying factor 2122685356126871835Rat
40968761LOC120095933uncharacterized LOC120095933122686188326865773Rat
1304763Cct6achaperonin containing TCP1 subunit 6A122687273626883125Rat
41308945LOC120096108small nucleolar RNA SNORA15122687576126875891Rat
41347348Snora22csmall nucleolar RNA, H/ACA box 22C122688078826880922Rat
1308764Psphphosphoserine phosphatase122688252426905084Rat
1566421Nipsnap2nipsnap homolog 2122690606826944238Rat
41142329LOC120095934uncharacterized LOC120095934122690948126917294Rat
40971147LOC120096123small nucleolar RNA SNORA76122692392026924065Rat
1307650Mrps17mitochondrial ribosomal protein S17122694853526951828Rat
1596186Septin14septin 14122697528327005588Rat
11492414LOC10835244040S ribosomal protein S25 pseudogene122702189927022580Rat
2324824Zfp11zinc finger protein 11122702806727040846Rat
1311541Mmp17matrix metallopeptidase 17122707439827099317Rat
41053934LOC120095935uncharacterized LOC120095935122707716627079043Rat
1305004Sfswapsplicing factor SWAP122710960727179941Rat
7689144LOC102555340uncharacterized LOC102555340122731604127324144Rat
1594795Adgrd1adhesion G protein-coupled receptor D1122748890827603714Rat
1594781LOC689271similar to ATP synthase, H+ transporting, mitochondrial Fo complex, subunit f, isoform 2122761224627612664Rat
40947512LOC120095936uncharacterized LOC120095936122761394627623220Rat
40980827LOC120095938uncharacterized LOC120095938122763696527640093Rat
41096920LOC120095937uncharacterized LOC120095937122763709427645516Rat
41134391LOC120095939uncharacterized LOC120095939122765388027659897Rat
620367RanRAN, member RAS oncogene family122767404927678598Rat
2558Stx2syntaxin 2122767874427714751Rat
708533Rimbp2RIMS binding protein 2122774761527946256Rat
1306980Piwil1piwi-like RNA-mediated gene silencing 1122794974327970645Rat
11518793LOC108352441uncharacterized LOC108352441122797074527974390Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10888D12Wox1092122089438020894469Ratregion
11051D12Mit2217121961087019611091Ratregion
11052D12Wox11196121961088619611090Ratregion
11053D12Wox12198121961088919611095Ratregion
33911D12Mit6139121235161912351758Ratregion
33961D12Mit5180121235161912351752Ratregion
34017D12Mit9142122184936621849508Ratregion
34246D12Mgh3118122423477724234895Ratregion
34417D12Mgh2163121983578919835952Ratregion
34729D12Mgh5132122806443328064557Ratregion
11449D12Wox14158122200342822003586Ratregion
11450D12Mgh12140122199658621996726Ratregion
11451D12Mgh13145122200341122003550Ratregion
33725D12Mit1259121502494215025183Ratregion
36025D12Rat23154122413905724139202Ratregion
36221D12Rat4292121238654912386833Ratregion
36344D12Mit10121122363264523632770Ratregion
37250D12Rat26201122269248122692658Ratregion
37272D12Rat28120121580606515806191Ratregion
37318D12Rat29150121731067817310845Ratregion
37346D12Rat27205122481210124812308Ratregion
37478D12Rat43243121107382511074078Ratregion
35479D12Rat8158122277945922779600Ratregion
35501D12Rat21671293182169318387Ratregion
36805D12Rat13170122482568624825856Ratregion
37878D12Rat33221122114617721146418Ratregion
36538D12Rat7161121994867819948839Ratregion
36755D12Rat11165122495666924956834Ratregion
34801D12Rat3148121181215911812311Ratregion
35889D12Rat10155122367192823672083Ratregion
39626D12Rat75215122649713826497355Ratregion
39886D12Rat65202121144446611444665Ratregion
38052D12Rat37165121037299310373166Ratregion
38094D12Rat47209121507055115070761Ratregion
40408D12Rat91160121587265315872803Ratregion
40702D12Rat69211121995043219950632Ratregion
38404D12Rat45248122515746025157706Ratregion
40214D12Rat83158122663672426636867Ratregion
39026D12Rat34223121106751711067730Ratregion
39218D12Rat35200122291940222919596Ratregion
39236D12Rat51213122127306221273283Ratregion
39330D12Rat39215121290184612902077Ratregion
39446D12Rat99231122573546425735691Ratregion
41960D12Arb21701285254238525593Ratregion
41384D12Rat70154121964216619642312Ratregion
41414D12Rat63166121000902810009200Ratregion
41440D12Rat74137122492508824925229Ratregion
42965D12Rat92248122078029620780530Ratregion
42969D12Rat115215122408880524089002Ratregion
40838D12Rat622171298777889877995Ratregion
40942D12Rat60178121003653010036704Ratregion
40986D12Rat72309122196559521965906Ratregion
41054D12Rat61178121023185410232030Ratregion
43361D1Got180156121109377711093812Ratregion
44933D12Got122581290680279068285Ratregion
44935D12Got1012041295268829527086Ratregion
44937D12Got13295121039569510395989Ratregion
44939D12Got14194121035540310355595Ratregion
44940D12Got15270121080911110809378Ratregion
44941D12Got21274121095792810958202Ratregion
44942D12Got18173121008692310087097Ratregion
44944D12Got17131121098458710984718Ratregion
44947D12Got25127121216883812168962Ratregion
44948D12Got20234121091241010912644Ratregion
44949D12Got24145121221818412218331Ratregion
44950D12Wox5116121363552313635658Ratregion
44951D12Got26220121281017712810397Ratregion
44952D12Got27156121343671213436870Ratregion
44954D12Got29279121392476113925040Ratregion
44956D12Got30158121446396714464125Ratregion
44959D12Got34207121690215316902360Ratregion
44960D12Got35142121709872117098867Ratregion
44962D12Got36139121637919316379328Ratregion
44963D12Got32176121709874417098921Ratregion
44965D12Got40230121986903919869269Ratregion
44967D12Got41157121981117419811331Ratregion
44968D12Got39155121958899819589153Ratregion
44969D12Got102135122111996721120102Ratregion
44970D12Got45149122195186021952011Ratregion
44971D12Got46216122229720922297425Ratregion
44973D12Got103249122087451320874764Ratregion
44974D12Got48180122289624922896429Ratregion
44975D12Got49185122306034523060532Ratregion
44976D12Got47111122342739323427504Ratregion
44977D12Got50298122348574723486045Ratregion
44978D12Got51205122359346823593673Ratregion
44979D12Got55222122386746423867686Ratregion
44980D12Got58145122565246825652613Ratregion
44981D12Got67241122606235526062598Ratregion
44982D12Got57162122460575724605919Ratregion
44983D12Got104196122586210725862303Ratregion
44986D12Got68234122730481027305044Ratregion
44989D12Got64228122738629927386531Ratregion
44990D12Got61128122731252027312648Ratregion
60755D12Wox16142122701474427014890Ratregion
60756D12Wox3961294541359454231Ratregion
625806D12Got19133121171290011713033Ratregion
60019D12Got53166122564305025643216Ratregion
60020D12Got54136122524970125249837Ratregion
60021D12Got56179122565242725652606Ratregion
60022D12Got59187122614257626142765Ratregion
60023D12Got60285122632917826329463Ratregion
60024D12Got62266122678857326788836Ratregion
60025D12Got65197122796564827965847Ratregion
60026D12Got66298122773875427739052Ratregion
60012D12Got105128121966594319666071Ratregion
60016D12Got43159122021785420218013Ratregion
61278D12Arb5122806439628064601Ratregion
62471D2Uia1271121531710015317367Ratregion
629605D12Hmgc1181121693293516933106Ratregion
629606D12Hmgc2262122199672021996983Ratregion
67290D8Arb9204122200342122003625Ratregion
67356D12Arb15202122195183521952039Ratregion
1630268D12Cebr1239122744705827447299Ratregion
1628808D12Got207275121011549810115773Ratregion
1629328D12Got217284122191328221913563Ratregion
1629647D12Got220119122088154520881664Ratregion
1638964D12Got23111121265868012658791Ratregion
1640906D12Got212221122500046925000690Ratregion
1641769D12Wox20121042238110422669Ratregion
1632605D12Got211125122479240024792525Ratregion
1633534D12Wox29101121042600010426267Ratregion
1633534D12Wox29101121042616410426267Ratregion
1639781D12Got226103121885849018858588Ratregion
1635936D12Wox19156121042327310423429Ratregion
1637896D12Uia3216122315654923156765Ratregion
7205870PMC85795P4500121166435411665320Ratregion
7192219Fzd9487122142886621429353Ratregion
7193095AA957504192122056484220565034Ratregion
5035789PMC180915P1362121166505411665416Ratregion
5035831PMC20960P1346121166562111665967Ratregion
5035841PMC224995P1585121166504811665633Ratregion
5035851PMC23951P1565121166510011665665Ratregion
5035853PMC240671P1382121166563211666014Ratregion
5035873PMC26753P1657121166524911665906Ratregion
5035879PMC275467P1254121166506311665317Ratregion
5038642C7881584121891612518916209Ratregion
5035905PMC304100P1121121166499811665119Ratregion
5035973PMC340938P1249121166539311665642Ratregion
5036011PMC85361P1357121166505211665409Ratregion
5036027PMC96811P1651121166508711665738Ratregion
5036033PMC98352P1795121166519711665992Ratregion
5036069Actb-rs1288121166566011666072Ratregion
5038900RH127397183121545384115454024Ratregion
5038936RH127418190122679902626799216Ratregion
5038976RH127441189122055290720553096Ratregion
7206564UniSTS:547070835121185356311854398Ratregion
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5089283AU049064185122606235026062537Ratregion
5083337BF417900202122076495320765155Ratregion
5088299AU048487168122079838820799310Ratregion
5088299AU048487168122079914220799310Ratregion
5090807AU049974208122017595020176158Ratregion
5088579AU048654176121742593117426107Ratregion
5088651AU048696137121039271410392851Ratregion
5088655AU048698165122220861222208776Ratregion
5088655AU048698165122220861222209459Ratregion
5088827AU048794232122116014721160379Ratregion
5089619AU049263194122408882824089022Ratregion
5089627AU049267158122689174026891898Ratregion
5089721AU049324182121134469111344871Ratregion
5090463AU049765202121206494112065143Ratregion
5090467AU049767193122326311323263306Ratregion
5090515AU049797289122365538623655675Ratregion
5084104AI01303399121081005310810152Ratregion
5081457Fzd9269122142861721428886Ratregion
5081461UniSTS:230793351122205904822059399Ratregion
5090261AU049646126121531128715311413Ratregion
5088139Uncx4.198121509279115092889Ratregion
5088143Baz1b121122148981621489937Ratregion
5082163BI280199151121963525119635402Ratregion
5082331BI274506161122197926321979424Ratregion
5082417BE1193481661285716638571829Ratregion
5082421BE119354170122590602025906190Ratregion
5082437BI274753205122247585722476062Ratregion
5088259AU048461162122287962622879788Ratregion
5088539AU0486291431299684169968557Ratregion
5080834RH141809180121690761816907812Ratregion
5085092AW533191151122737516627375317Ratregion
5085345BE100612165122257990922580081Ratregion
5090417AU049738129122532098125321110Ratregion
5085537BE097726203122598870325988906Ratregion
5089193AU049010210121953746719537677Ratregion
5082587BF416395169121698410416984273Ratregion
5080736RH141752202121067691910677121Ratregion
5080796RH141786207121123570311235910Ratregion
5081016RH141916184121488585914886043Ratregion
5081258RH142057192122052421920524411Ratregion
5084786AI171447119122704057727040696Ratregion
5084938AI236775145121403057014031271Ratregion
5083067BF390734209121079363910793848Ratregion
5083365AA818673142122667674026677034Ratregion
5086449BM386455156121237862412378780Ratregion
5086572BE114476157122505617025056327Ratregion
5086610AA850383191121211279112112982Ratregion
5081388AI454263194121531086415311058Ratregion
5081459UniSTS:230791255122142863121428886Ratregion
5081633BE117712186121280532612805512Ratregion
5086695BE115283162121356318313563345Ratregion
5086787BE107332214122051587620516090Ratregion
5085709BE101960176122081933920819515Ratregion
5085758BM390892215121237843112378646Ratregion
5085800BF388132200122148408021484280Ratregion
5086034BM383880189122345327223453461Ratregion
5502619RH1256771631295025989502761Ratregion
5502918Prkar1b751121562410215624853Ratregion
5503196mActb0121166602411666464Ratregion
5503072Sbds161122642055326421639Ratregion
5502989D5Dcr13141122188159321881734Ratregion
5503867SSC3D06197122077254720772744Ratregion
5507648Eln698122198622321986921Ratregion
5503613Cldn3660122170891021709570Ratregion
5503986UniSTS:2571050121483699514837963Ratregion
5504448PMC209527P1500121166435911665325Ratregion
5504464PMC212730P175121166572611665925Ratregion
5504504PMC24644P4243121166423011664560Ratregion
5504658PMC33181P2315121166558211666021Ratregion
5504662PMC33279P1460121166438611665312Ratregion
5504670PMC350549P3154121166447211665092Ratregion
5504742PMC86565P2601121905335319053954Ratregion
5504314D12S1240E100121773411417734214Ratregion
5504314D12S1240E100121775751717757617Ratregion
5504314D12S1240E100121883894918839049Ratregion
5504562PMC30411P1321121166415911664567Ratregion
5504682PMC356969P12330121166447111665267Ratregion
5504758PMC87052P1433121166537911666026Ratregion
5504772PMC97445P1440121166413211665125Ratregion
5504819ha2178866122438816024389026Ratregion
5505327Papolb321121204477912045100Ratregion
5683878D12Hmgc3194121300829613008490Ratregion
5683880D12Hmgc4170121310437613104548Ratregion
5683882D12Hmgc5193121837715918377352Ratregion
5683884D12Hmgc6121921261419212979Ratregion
5683884D12Hmgc6121921274219212979Ratregion
5505961Gnb2390121916298219163459Ratregion
5505360Ache1290121941012219411412Ratregion
5505466UniSTS:530587421121487436114874782Ratregion
5505919Mmp1795122708836427088459Ratregion
5506041UniSTS:498230476121105937411059850Ratregion
5506193UniSTS:498764430122796486227965292Ratregion
5506270GDB:458569784122054586220545946Ratregion
5506797G45501143121010232610102469Ratregion
5507245BB013350871288458828845969Ratregion
5507263aa6586760121166594711666235Ratregion
5507319G48114154122206037922060533Ratregion
5499595Wbscr1215122209751722098178Ratregion
5500240AI747533103121704270517043542Ratregion
5499597Wbscr14147122154414321545203Ratregion
5499615MARC_2660-2661:991933047:1307121773349017733786Ratregion
5499615MARC_2660-2661:991933047:1307121775689317757189Ratregion
5499615MARC_2660-2661:991933047:1307121882122918821524Ratregion
5499615MARC_2660-2661:991933047:1307121883832518838621Ratregion
5499663MARC_6945-6946:992007577:2582122094952920950111Ratregion
5500967PMC102052P1360121166544211666016Ratregion
5500977PMC107891P1514121166434111665321Ratregion
5501001PMC115141P1318121166504711665365Ratregion
5501011PMC117352P1160121166433611664496Ratregion
5501013PMC117780P1465121166516311665718Ratregion
5501091PMC133998P8537121166440311665406Ratregion
5501387Mafk588121483465614835244Ratregion
5499901UniSTS:235351167121411079914110966Ratregion
5499903UniSTS:2353622031293588549359057Ratregion
5499895UniSTS:235349192121539658615396778Ratregion
5499899UniSTS:235344206121963543119635637Ratregion
5499905UniSTS:235357128121125994511260073Ratregion
5502357RH124577138121071048010710618Ratregion
5503095ASL204122667516726675631Ratregion
5500713RH911941560122119362221195182Ratregion
5500535RH135895139121035996310360102Ratregion
5501017PMC122924P2439121166413211665124Ratregion
5500551RH135954170121472489314725063Ratregion
5503556UniSTS:463940304121941027519410579Ratregion
5500875D5S5031483122138140521382889Ratregion
5501175PMC15197P30121960956619610072Ratregion
5501273PMC187403P1220121166512111665341Ratregion
5504454PMC21071P1285121166561611666025Ratregion
5504688PMC37512P3250121166507111665321Ratregion
5504730PMC86032P2444121166441411665324Ratregion
5504780PMC99880P2318121166505011665368Ratregion
5504789UniSTS:2741821383121483659514837978Ratregion
5505116LOC783396150121581353015813680Ratregion
5501693LOC345651130121166447011665066Ratregion
5501724UniSTS:266994207121932685119327058Ratregion
5502066MARC_26575-26576:1033748265:10121909595319096548Ratregion
5502126MARC_5081-5082:996690120:1683121912715019127833Ratregion
5502295RH1243081461288253138825459Ratregion
5502686Tmem184a0121482930314829966Ratregion
5502307RH124339154121698989516990049Ratregion
5502307RH124339154121698989516990049Ratregion
5502609RH12552482122389537023895452Ratregion
5502898Lmtk21032121042702310428055Ratregion
5502475RH125009259122387715623877415Ratregion
Position Markers

Flank 1: (D12Arb2)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2128,525,423 - 8,525,593 (+)MAPPER
Rnor_6.01210,256,890 - 10,257,059NCBI
Rnor_5.01212,361,595 - 12,361,764UniSTS
Celera1210,340,887 - 10,341,056UniSTS
RH 3.4 Map12110.7UniSTS
RH 3.4 Map12110.7RGD
RH 2.0 Map1288.7RGD
SHRSP x BN Map1211.64RGD
Cytogenetic Map12p11UniSTS
Peak: (D12Arb2)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2128,525,423 - 8,525,593 (+)MAPPER
Rnor_6.01210,256,890 - 10,257,059NCBI
Rnor_5.01212,361,595 - 12,361,764UniSTS
Celera1210,340,887 - 10,341,056UniSTS
RH 3.4 Map12110.7UniSTS
RH 3.4 Map12110.7RGD
RH 2.0 Map1288.7RGD
SHRSP x BN Map1211.64RGD
Cytogenetic Map12p11UniSTS
Flank 2: (D12Arb5)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21228,064,396 - 28,064,601 (+)MAPPER
Rnor_6.01231,723,528 - 31,723,732NCBI
Rnor_5.01233,647,362 - 33,647,566UniSTS
RGSC_v3.41229,130,143 - 29,130,348RGD
RGSC_v3.41229,130,144 - 29,130,348UniSTS
RGSC_v3.11228,993,531 - 28,993,736RGD
Celera1229,756,840 - 29,757,037UniSTS
Cytogenetic Map12 RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)1219318387Rat
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)127977298525593Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12390696910373166Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12683319017870186Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12931821612829686Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121107382524234895Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382528064557Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121300829619212979Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121363552330827399Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
61443Btemp2Thermal response to stress QTL 23.30.000094body temperature trait (VT:0005535)core body temperature (CMO:0001036)121502518320794014Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)121961087024139202Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961088935682913Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121983578938193007Rat
631521Pia12Pristane induced arthritis QTL 128.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)122025941723672083Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122413920236638073Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)122423477731894213Rat
1556747Calcic1Intracellular calcium level QTL 13.6platelet calcium amount (VT:0010500)platelet intracellular calcium level (CMO:0000922)122806443340130419Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)122806443345899022Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)122806443346669029Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)122806455740218380Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Eau2

RGD Curation Notes
Note Type Note Reference
qtl_general microarray analysis, z-score analysis, major fluctuation in the expression, known functional role in Eau susceptibility suggested 42 genes, 26 of which were validated 2293749