Tmem116 (transmembrane protein 116)

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Gene: Tmem116 (transmembrane protein 116) Rattus norvegicus

Analyze

Symbol:

Tmem116

Name:

transmembrane protein 116

RGD ID:

1596066

Description:

Predicted to localize to integral component of membrane. Orthologous to human TMEM116 (transmembrane protein 116); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; endosulfan.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

hypothetical protein LOC690442; hypothetical protein LOC690455; LOC690442; LOC690455

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM116 (transmembrane protein 116)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Tmem116 (transmembrane protein 116)	HGNC	Treefam, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Tmem116 (transmembrane protein 116)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM116 (transmembrane protein 116)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM116 (transmembrane protein 116)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem116 (transmembrane protein 116)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM116 (transmembrane protein 116)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	TMEM116 (transmembrane protein 116)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmem116 (transmembrane protein 116)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TMEM116 (transmembrane protein 116)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	si:ch211-157p22.10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Saccharomyces cerevisiae (baker's yeast):	GPR1	Alliance	DIOPT (Ensembl Compara\|PANTHER)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	12	40,537,261 - 40,618,805 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	40,557,677 - 40,590,361 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	42,403,957 - 42,485,861 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	36,176,676 - 36,209,989 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	12	36,705,977 - 36,739,335 (-)	NCBI		Celera
Cytogenetic Map	12	q16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

3-methylcholanthrene (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

calyculin a (ISO)

carbon nanotube (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dibutyl phthalate (ISO)

doxorubicin (ISO)

endosulfan (EXP)

Erionite (ISO)

fenvalerate (EXP)

folic acid (ISO)

furan (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

nickel atom (ISO)

nobiletin (EXP,ISO)

p-toluidine (EXP)

paracetamol (ISO)

quinolin-8-ol (ISO)

rac-lactic acid (ISO)

sulforaphane (ISO)

sunitinib (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

tunicamycin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

integral component of membrane (IEA)

Molecular Function

molecular_function (ND)

References

References - curated


1.	RGD automated import pipeline for gene-chemical interactions
2.	RGD comprehensive gene curation

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Tmem116
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	12	40,537,261 - 40,618,805 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	40,557,677 - 40,590,361 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	42,403,957 - 42,485,861 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	36,176,676 - 36,209,989 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	12	36,705,977 - 36,739,335 (-)	NCBI		Celera
Cytogenetic Map	12	q16	NCBI

TMEM116
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	12	111,931,282 - 112,013,185 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	12	111,894,880 - 112,013,219 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	12	112,369,086 - 112,451,023 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	110,853,486 - 110,935,318 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	12	111,994,553 - 112,076,493 (-)	NCBI
Cytogenetic Map	12	q24.12-q24.13	NCBI
HuRef	12	109,382,372 - 109,464,309 (-)	NCBI		HuRef
CHM1_1	12	112,336,986 - 112,419,272 (-)	NCBI		CHM1_1

Tmem116
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	121,590,643 - 121,656,601 (+)	NCBI	GRCm39		mm39
GRCm38	5	121,452,580 - 121,518,188 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	121,451,893 - 121,524,183 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	121,902,718 - 121,945,430 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	5	121,723,818 - 121,756,038 (+)	NCBI			mm8
Celera	5	118,542,581 - 118,585,505 (+)	NCBI		Celera
Cytogenetic Map	5	F	NCBI

Tmem116
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	8,429,543 - 8,542,216 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955482	8,388,446 - 8,572,160 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMEM116
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	12	112,923,729 - 113,004,037 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	112,923,729 - 113,004,037 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	12	109,490,385 - 109,610,574 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

TMEM116
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	26	9,495,135 - 9,584,460 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	26	9,495,011 - 9,609,819 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Tmem116
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936558	4,494,340 - 4,531,295 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM116
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	39,695,515 - 39,806,773 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	39,695,739 - 39,812,613 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	42,187,491 - 42,293,211 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMEM116
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	107,192,723 - 107,244,291 (-)	NCBI
ChlSab1.1 Ensembl	11	107,194,412 - 107,228,392 (-)	Ensembl

Tmem116
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624747	20,175,061 - 20,383,459 (+)	NCBI

Position Markers

BF403047

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	12	40,557,777 - 40,557,925	NCBI	Rnor6.0
Rnor_5.0	12	42,425,013 - 42,425,161	UniSTS	Rnor5.0
RGSC_v3.4	12	36,176,777 - 36,176,925	UniSTS	RGSC3.4
Celera	12	36,706,078 - 36,706,226	UniSTS
Cytogenetic Map	12	q16	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9590086	Insglur6	Insulin/glucose ratio QTL 6	18.97	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	12	150810	45150810	Rat
9590147	Scort7	Serum corticosterone level QTL 7	13.61	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	12	150810	45150810	Rat
7411545	Bw128	Body weight QTL 128	5.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	150810	45150810	Rat
7411586	Foco5	Food consumption QTL 5	5.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	150810	45150810	Rat
7411660	Foco28	Food consumption QTL 28	10.9	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	150810	45150810	Rat
7411595	Foco9	Food consumption QTL 9	4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	150810	45150810	Rat
8694179	Bw150	Body weight QTL 150	2.9	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	150810	45150810	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	492578	45492578	Rat
737979	Pia22	Pristane induced arthritis QTL 22	53.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2475687	47475687	Rat
634351	Apr5	Acute phase response QTL 5	6.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	12	2513442	47513442	Rat
2302042	Pia38	Pristane induced arthritis QTL 38	3.5	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	2513442	47513442	Rat
634350	Apr4	Acute phase response QTL 4	6		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	4210051	49210051	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	9223626	52716770	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	9223626	52716770	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	9223626	52716770	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	9223626	52716770	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	9223626	52716770	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	9223626	52716770	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	9223630	52716770	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	9789834	52716770	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	13127211	50320041	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	14419775	52716770	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15021986	52716770	Rat
61421	Cia12	Collagen induced arthritis QTL 12	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	15714609	41291738	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	15908900	52716770	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	15908900	52716770	Rat
631543	Bp83	Blood pressure QTL 83	5.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	17185580	44098244	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	18342477	52716770	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	18342477	52716770	Rat
2302060	Pia37	Pristane induced arthritis QTL 37	6.1	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	18729043	52716770	Rat
1549902	Bp269	Blood pressure QTL 269			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	18752593	52716770	Rat
1549912	Bp268	Blood pressure QTL 268			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	18752593	52716770	Rat
737822	Alc10	Alcohol consumption QTL 10	2.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	12	22650702	45946937	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	22650702	48598906	Rat
61324	Eae5	Experimental allergic encephalomyelitis QTL 5	14		nervous system integrity trait (VT:0010566)	percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)	12	22650702	52716770	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	22650721	41291738	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	22876297	43799153	Rat
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	24906590	52716770	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	26098845	52716770	Rat
70169	Eae13	Experimental allergic encephalomyelitis QTL 13		0.032	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	12	27190240	42196641	Rat
8693658	Alc33	Alcohol consumption QTL 33	2.1	0.68	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	29113609	49560679	Rat
8693635	Alc28	Alcohol consumption QTL 28	2.7	0.439	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	29113609	50757185	Rat
1556747	Calcic1	Intracellular calcium level QTL 1		3.6	platelet calcium amount (VT:0010500)	platelet intracellular calcium level (CMO:0000922)	12	31723565	47433663	Rat
1300175	Cm5	Cardiac mass QTL 5	3.78		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	31723565	51955754	Rat
1600386	Calcic2	Intracellular calcium level QTL 2		0.001	platelet physiology trait (VT:0005464)	platelet intracellular calcium level (CMO:0000922)	12	31723565	52716770	Rat
1331787	Rf41	Renal function QTL 41	2.998		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	12	31723688	45946802	Rat
631829	Alc6	Alcohol consumption QTL 6	4.7		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	12	32289782	43305579	Rat
1300162	Bp188	Blood pressure QTL 188	3.19		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	37521884	51955754	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	160
Count of miRNA genes:	128
Interacting mature miRNAs:	136
Transcripts:	ENSRNOT00000067503
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		23								23	7	6
Low	3	20	22	6	12	6	8	11	21	8	24	5	8
Below cutoff			34	34	7	34			51	4	10

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001159625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AABR07036374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AABR07036375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01072541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01072542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01072543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01072544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC167104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000067503 ⟹ ENSRNOP00000063208

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	40,557,677 - 40,590,361 (-)	Ensembl

RefSeq Acc Id:

NM_001159625 ⟹ NP_001153097

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	40,557,676 - 40,590,361 (-)	NCBI
Rnor_5.0	12	42,403,957 - 42,485,861 (-)	NCBI
RGSC_v3.4	12	36,176,676 - 36,209,989 (-)	RGD
Celera	12	36,705,977 - 36,739,335 (-)	RGD

Sequence:

show sequence

CTGAAGTCTGCATGGCCCTCCCACTGGAGCTTTTTCCTGCGATACAGTGGATACAGTTTGCCGT
GGCTACTCTGAGTGTTATAGGTTCCAGTTCACTTATCACCTACATCGTGTTCCAGAACCCACAG
AAGTCTGCAGAGGTAAAGTCACTCTTGTATCTGAGCTTCTCTGACCTGCTCCTGGGAATTTGCT
GGCTCATAAAGGCACTTGTCTATGGAACCGCAGCAGCCCACAAGGACAGCATCTGCTATAACCT
ACAGACTGCAGGAGAGATTTTCTACCTGGCCTCACTCGTCTTCACCGTCAGTTACATCTGGTGT
CTGTACGCGGAGCTGAGGAGGAAGCACAGCCCGAGCGAGCAGAGCACAGCTGCGCAGGTGACAG
ATTACGCTTGCCAAGGTGGTTGTGTAATGTTCCTTTTGTCAAGCCTGACACCTCTGCTGTTGAT
GACGCCTGTGTTCTTTCTGGGCAACGTCAATGAATGTTTCCACAACTTCAGCCAGAACCACAGG
TGTATGCTAATGCACTCTGAGCCACTGCCCTCCACCAACACGTCTGTCTGCAGCACACTCTATC
TTTATGGTGTCACCGTTTTCCTGGCCAGCTTTTTCTTCAGCCTCCTCACCATTGTGGTCTTACT
CGTCCTCGCCCAGACGTTATATAAGAAGTTTGTGAAATCCATGGGCCTTCTGGAGAGCGAGCAG
TGGGCAGTGATCCACACGGTGGGTCAGCGAGTGCGTTTTTTCCCAGCGGCCTTTGTGTGCTGCT
GGGGCCCAGCTGTCACACTGCTGATCATGAAGCTGACCAAGCCGCAGGAGACCTCCCTGCACGT
GGCCCTCTCTGTGCTCCAGGCTCTTACAGCAGCATCCCAGGGGCTGCTCAACTGTGGCATTTAT
GGCTGGACACAGTGCAAGTTCCAGCAGATAAAGCGCGAGCCTCCCCGTGACGCAGACACTCAGA
CCCCACTGCTGTGCTCACAGAAGAGAGTTTATAGCAGGAGCCCGAGCGCATCGAGGCCTCCTCT
TGCCTTTGCTTCCAGCTCTTCCACCGTTCTTTGAGCCTCTGGACTGCACCGTCAGGGAGTGAAT
GTGTCCCAGGAGTGGACTCTCTGCTGGCCACACCCCAGACTGATGGCCACACCCCAGACTGAAG
AGCTGAAAGGAAATGTAGGGCCATGGCCAGTAGCAATTGTGGGCGAATTCGGAAGGAACTCTCC
AACTGCTCGTTCAGGGAGATATAGCCGCTTTCTATCTAAGAGACTCATTACTTTAACAAGTACT
AGACTTATTTACATCTCTTGAAGAAAAAATAAATGTCAGGTTCATATGTAAAAAAAAAAAAAAA
AAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006249404 ⟹ XP_006249466

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	40,557,666 - 40,590,641 (-)	NCBI
Rnor_5.0	12	42,403,957 - 42,485,861 (-)	NCBI

Sequence:

show sequence

ATCAGGTCTGCTGGATTAGGCACATCCTCTCTCACTGAGGCAGCCCTCTGCTCTGTGACATCTG
TGCTGGGGGCCTCGGTCCAGCCAGCTATGCCCTTTGTTACAACTTGCTTTCTTCTGTCACCTGC
TTCTTCTATTTTTGGCTTTGTCCTTGGCCCTTCAGCCTCCTTCCCTTAAGGTACAGGGCAGGAT
TAGCTGGGGTGGAGCCCAGCTGAGGTAGGGTGGAGCTACCTGTTCCGAGCCTGACTGAGAAGGG
CCTGGGCTTGGAGGGTCGCTGGAACTGAAGTCTGCATGGCCCTCCCACTGGAGGTCAGCCGCCT
GGAAGGCAGATGGGAGTCTCTTTTTCCTGCGATACAGTGGATACAGTTTGCCGTGGCTACTCTG
AGTGTTATAGGTTCCAGTTCACTTATCACCTACATCGTGTTCCAGAACCCACAGAAGTCTGCAG
AGGTAAAGTCACTCTTGTATCTGAGCTTCTCTGACCTGCTCCTGGGAATTTGCTGGCTCATAAA
GGCACTTGTCTATGGAACCGCAGCAGCCCACAAGGACAGCATCTGCTATAACCTACAGACTGCA
GGAGAGATTTTCTACCTGGCCTCACTCGTCTTCACCGTCAGTTACATCTGGTGTCTGTACGCGG
AGCTGAGGAGGAAGCACAGCCCGAGCGAGCAGAGCACAGCTGCGCAGGTGACAGATTACGCTTG
CCAAGGTGGTTGTGTAATGTTCCTTTTGTCAAGCCTGACACCTCTGCTGTTGATGACGCCTGTG
TTCTTTCTGGGCAACGTCAATGAATGTTTCCACAACTTCAGCCAGAACCACAGGTGTATGCTAA
TGCACTCTGAGCCACTGCCCTCCACCAACACGTCTGTCTGCAGCACACTCTATCTTTATGGTGT
CACCGTTTTCCTGGCCAGCTTTTTCTTCAGCCTCCTCACCATTGTGGTCTTACTCGTCCTCGCC
CAGACGTTATATAAGAAGTTTGTGAAATCCATGGGCCTTCTGGAGAGCGAGCAGTGGGCAGTGA
TCCACACGGTGGGTCAGCGAGTGCGTTTTTTCCCAGCGGCCTTTGTGTGCTGCTGGGGCCCAGC
TGTCACACTGCTGATCATGAAGCTGACCAAGCCGCAGGAGACCTCCCTGCACGTGGCCCTCTCT
GTGCTCCAGGCTCTTACAGCAGCATCCCAGGGGCTGCTCAACTGTGGCATTTATGGCTGGACAC
AGTGCAAGTTCCAGCAGATAAAGCGCGAGCCTCCCCGTGACGCAGACACTCAGACCCCACTGCT
GTGCTCACAGAAGAGAGTTTATAGCAGGAGCCCGAGCGCATCGAGGCCTCCTCTTGCCTTTGCT
TCCAGCTCTTCCACCGTTCTTTGAGCCTCTGGACTGCACCGTCAGGGAGTGAATGTGTCCCAGG
AGTGGACTCTCTGCTGGCCACACCCCAGACTGATGGCCACACCCCAGACTGAAGAGCTGAAAGG
AAATGTAGGGCCATGGCCAGTAGCAATTGTGGGCGAATTCGGAAGGAACTCTCCAACTGCTCGT
TCAGGGAGATATAGCCGCTTTCTATCTAAGAGACTCATTACTTTAACAAGTACTAGACTTATTT
ACATCTCTTGAAGAAAAAATAAATGTCAGGTTCATATGTATGTGTGTCAA

hide sequence

RefSeq Acc Id:

XM_006249406 ⟹ XP_006249468

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	40,557,666 - 40,590,648 (-)	NCBI
Rnor_5.0	12	42,403,957 - 42,485,861 (-)	NCBI

Sequence:

show sequence

CTGGTACATCAGGTCTGCTGGATTAGGCACATCCTCTCTCACTGAGGCAGCCCTCTGCTCTGTG
ACATCTGTGCTGGGGGCCTCGGTCCAGCCAGCTATGCCCTTTGTTACAACTTGCTTTCTTCTGT
CACCTGCTTCTTCTATTTTTGGCTTTGTCCTTGGCCCTTCAGCCTCCTTCCCTTAAGGTACAGG
GCAGGATTAGCTGGGGTGGAGCCCAGCTGAGGTAGGGTGGAGCTACCTGTTCCGAGCCTGACTG
AGAAGGGCCTGGGCTTGGAGGGTCGCTGGAACTGAAGTCTGCATGGCCCTCCCACTGGAGGTCA
GCCGCCTGGAAGGCAGATGGGAGTCTCTTTTTCCTGCGATACAGTGGATACAGTTTGCCGTGGC
TACTCTGAGTGTTATAGGTTCCAGTTCACTTATCACCTACATCGTGTTCCAGAACCCACAGAAG
TCTGCAGAGGTAAAGTCACTCTTGTATCTGAGCTTCTCTGACCTGCTCCTGGGAATTTGCTGGC
TCATAAAGGCACTTGTCTATGGAACCGCAGCAGCCCACAAGGACAGCATCTGCTATAACCTACA
GACTGCAGGAGAGGTGACAGATTACGCTTGCCAAGGTGGTTGTGTAATGTTCCTTTTGTCAAGC
CTGACACCTCTGCTGTTGATGACGCCTGTGTTCTTTCTGGGCAACGTCAATGAATGTTTCCACA
ACTTCAGCCAGAACCACAGGTGTATGCTAATGCACTCTGAGCCACTGCCCTCCACCAACACGTC
TGTCTGCAGCACACTCTATCTTTATGGTGTCACCGTTTTCCTGGCCAGCTTTTTCTTCAGCCTC
CTCACCATTGTGGTCTTACTCGTCCTCGCCCAGACGTTATATAAGAAGTTTGTGAAATCCATGG
GCCTTCTGGAGAGCGAGCAGTGGGCAGTGATCCACACGGTGGGTCAGCGAGTGCGTTTTTTCCC
AGCGGCCTTTGTGTGCTGCTGGGGCCCAGCTGTCACACTGCTGATCATGAAGCTGACCAAGCCG
CAGGAGACCTCCCTGCACGTGGCCCTCTCTGTGCTCCAGGCTCTTACAGCAGCATCCCAGGGGC
TGCTCAACTGTGGCATTTATGGCTGGACACAGTGCAAGTTCCAGCAGATAAAGCGCGAGCCTCC
CCGTGACGCAGACACTCAGACCCCACTGCTGTGCTCACAGAAGAGAGTTTATAGCAGGAGCCCG
AGCGCATCGAGGCCTCCTCTTGCCTTTGCTTCCAGCTCTTCCACCGTTCTTTGAGCCTCTGGAC
TGCACCGTCAGGGAGTGAATGTGTCCCAGGAGTGGACTCTCTGCTGGCCACACCCCAGACTGAT
GGCCACACCCCAGACTGAAGAGCTGAAAGGAAATGTAGGGCCATGGCCAGTAGCAATTGTGGGC
GAATTCGGAAGGAACTCTCCAACTGCTCGTTCAGGGAGATATAGCCGCTTTCTATCTAAGAGAC
TCATTACTTTAACAAGTACTAGACTTATTTACATCTCTTGAAGAAAAAATAAATGTCAGGTTCA
TATGTATGTGTGTCAA

hide sequence

RefSeq Acc Id:

XM_017598460 ⟹ XP_017453949

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	40,537,261 - 40,590,578 (-)	NCBI

Sequence:

show sequence

GTGCTGGGGGCCTCGGTCCAGCCAGCTATGCCCTTTGTTACAACTTGCTTTCTTCTGTCACCTG
CTTCTTCTATTTTTGGCTTTGTCCTTGGCCCTTCAGCCTCCTTCCCTTAAGGTACAGGGCAGGA
TTAGCTGGGGTGGAGCCCAGCTGAGGTAGGGTGGAGCTACCTGTTCCGAGCCTGACTGAGAAGG
GCCTGGGCTTGGAGGGTCGCTGGAACTGAAGTCTGCATGGCCCTCCCACTGGAGGTCAGCCGCC
TGGAAGGCAGATGGGAGTCTCTTTTTCCTGCGATACAGTGGATACAGTTTGCCGTGGCTACTCT
GAGTGTTATAGGTTCCAGTTCACTTATCACCTACATCGTGTTCCAGAACCCACAGAAGTCTGCA
GAGGTAAAGTCACTCTTGTATCTGAGCTTCTCTGACCTGCTCCTGGGAATTTGCTGGCTCATAA
AGGCACTTGTCTATGGAACCGCAGCAGCCCACAAGGACAGCATCTGCTATAACCTACAGACTGC
AGGAGAGATTTTCTACCTGGCCTCACTCGTCTTCACCGTCAGTTACATCTGGTGTCTGTACGCG
GAGCTGAGGAGGAAGCACAGCCCGAGCGAGCAGAGCACAGCTGCGCAGGTGACAGATTACGCTT
GCCAAGGTGGTTGTGTAATGTTCCTTTTGTCAAGCCTGACACCTCTGCTGTTGATGACGCCTGT
GTTCTTTCTGGGCAACGTCAATGAATGTTTCCACAACTTCAGCCAGAACCACAGGTGTATGCTA
ATGCACTCTGAGCCACTGCCCTCCACCAACACGTCTGTCTGCAGCACACTCTATCTTTATGGTG
TCACCGTTTTCCTGGCCAGCTTTTTCTTCAGCCTCCTCACCATTGTGGTCTTACTCGTCCTCGC
CCAGACGTTATATAAGAAGTTTGTGAAATCCATGGGCCTTCTGGAGAGCGAGCAGTGGGCAGTG
ATCCACACGGTGGGTCAGCGAGTGCGTTTTTTCCCAGCGGCCTTTGTGTGCTGCTGGGGCCCAG
CTGTCACACTGCTGATCATGAAGCTGACCAAGCCGCAGGAGACCTCCCTGCACGTGGCCCTCTC
TGTGCTCCAGAATAATGGTCCCCCACAGTGGATACTGTGACATCTTCCCAGAATCTTCCTCATG
CCAGCAACATGGACACGGATGTCCCTCCTCTAGCCACACAGCATTAATCAGCCCCAGAGCTCTC
AAAACACATGACTAGCTAGCCTGTCTGCTGACTGCAGACCCGGTCACCTTGCTGCCTAGTGAAC
ACAGCCACTTAACAGGCATCTCAGCCTGAACCCAGCCATGTCTGCTAGCCACACTTGGCCCATC
CCAGTTGAAGACCAGCCAGTGAGTGCACGTCTGAGTTCTGCTGCACTCTCTGTGACCCCTCTGT
GGGCAAATCCTTTTAGCTTTCGGGGGTGTTGTCATATCTCAAGGGATGACAGTGTTCCTAGAGC
TTCTCAACTTCCTAATGCTGTGACCTGGAAGGTGGTTTTCCAAGTTGCTTTCATTCCTATTTCA
TACCTATAACTTTGCTGCAGTTATGAATTACAATGTAAATGTGTGATGTGCAGAGGGGCTTAGG
AGACCCCTATGAAAGGCAGCTGTAGGCCGAGGTTGAGAACCACCGCTAAGACCTAGATCCTACT
GTAAGATCCGTCACGCTCAACACCAGCATCATCCTCTACTTGGCAAAGCAAAGCAAGAGCAGAT
AACGTTCTGTAACTACACGATGAATTGCACATTTATTTTATTTTTCTGAGACAAGACAGGTTTG
TTTGTGTAATTTTGGCTGTCCTGAAACTGACAGAAATGTAGTTCTCTACATAGACCAGGATGGC
CTTGAACTCACCTGCCTCAGCCTCCAAGTGCAGGCTTATGAGCCACCACCAACCTGCTGAATTG
CACACTTTTATCCTAAGGTGTTATTCTGTAGTCCAGGCTGGCCACTGACTGGTGCCAGTACTCC
TGCCTTAGTCTCCCTAGGTGGAGATCACAGGCATGAGACGCCATATTTGACTGGGAACTAGATC
TAGGGCATTGCATGTGCTAGGTAAGAACAGCACCACTGTTCTCTATTCACAGCTAATGGGTTAG
TTTCAAGATGCTTTTAAAATGATCAGATGGTGCAGGGGGTTCTTGCTACATCTCAGTATCTAAT
TAAGGACTGATCGGGACAGTCAGACTCATCAAATGTTCTTCCTTTTTACTGAAGGGAGGGAAAG
GCGCAGTGACAGTGTAGGCTGTGGGGTGGGGTACCCGCCACAGGCTCTTCCTGCCTGTCTCTGA
GGAGAGGTATTAAACCTGTCACACAGAAGGAA

hide sequence

RefSeq Acc Id:

XM_017598461 ⟹ XP_017453950

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	40,557,666 - 40,618,805 (-)	NCBI

Sequence:

show sequence

CACTCCGTGCCACTCGTCTAGGCTGGGTTTCGCGGCGTTCTCGCGTGAGGAGAGGCGCGAGGCG
CAGCCTCAACAATTCCCTCGTTGCCTTCTCTCGCCTTGGAACAAGACGTGGCGGCGTCCCTGCC
TTCTCTGCGCTGGGCTGTCATGAGGTCCGTTGAGACCCGTCGCTTCCCCCGCTTTTTCCTGCGA
TACAGTGGATACAGTTTGCCGTGGCTACTCTGAGTGTTATAGGTTCCAGTTCACTTATCACCTA
CATCGTGTTCCAGAACCCACAGAAGTCTGCAGAGGTAAAGTCACTCTTGTATCTGAGCTTCTCT
GACCTGCTCCTGGGAATTTGCTGGCTCATAAAGGCACTTGTCTATGGAACCGCAGCAGCCCACA
AGGACAGCATCTGCTATAACCTACAGACTGCAGGAGAGATTTTCTACCTGGCCTCACTCGTCTT
CACCGTCAGTTACATCTGGTGTCTGTACGCGGAGCTGAGGAGGAAGCACAGCCCGAGCGAGCAG
AGCACAGCTGCGCAGGTGACAGATTACGCTTGCCAAGGTGGTTGTGTAATGTTCCTTTTGTCAA
GCCTGACACCTCTGCTGTTGATGACGCCTGTGTTCTTTCTGGGCAACGTCAATGAATGTTTCCA
CAACTTCAGCCAGAACCACAGGTGTATGCTAATGCACTCTGAGCCACTGCCCTCCACCAACACG
TCTGTCTGCAGCACACTCTATCTTTATGGTGTCACCGTTTTCCTGGCCAGCTTTTTCTTCAGCC
TCCTCACCATTGTGGTCTTACTCGTCCTCGCCCAGACGTTATATAAGAAGTTTGTGAAATCCAT
GGGCCTTCTGGAGAGCGAGCAGTGGGCAGTGATCCACACGGTGGGTCAGCGAGTGCGTTTTTTC
CCAGCGGCCTTTGTGTGCTGCTGGGGCCCAGCTGTCACACTGCTGATCATGAAGCTGACCAAGC
CGCAGGAGACCTCCCTGCACGTGGCCCTCTCTGTGCTCCAGGCTCTTACAGCAGCATCCCAGGG
GCTGCTCAACTGTGGCATTTATGGCTGGACACAGTGCAAGTTCCAGCAGATAAAGCGCGAGCCT
CCCCGTGACGCAGACACTCAGACCCCACTGCTGTGCTCACAGAAGAGAGTTTATAGCAGGAGCC
CGAGCGCATCGAGGCCTCCTCTTGCCTTTGCTTCCAGCTCTTCCACCGTTCTTTGAGCCTCTGG
ACTGCACCGTCAGGGAGTGAATGTGTCCCAGGAGTGGACTCTCTGCTGGCCACACCCCAGACTG
ATGGCCACACCCCAGACTGAAGAGCTGAAAGGAAATGTAGGGCCATGGCCAGTAGCAATTGTGG
GCGAATTCGGAAGGAACTCTCCAACTGCTCGTTCAGGGAGATATAGCCGCTTTCTATCTAAGAG
ACTCATTACTTTAACAAGTACTAGACTTATTTACATCTCTTGAAGAAAAAATAAATGTCAGGTT
CATATGTATGTGTGTCAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001153097	(Get FASTA)	NCBI Sequence Viewer
	XP_006249466	(Get FASTA)	NCBI Sequence Viewer
	XP_006249468	(Get FASTA)	NCBI Sequence Viewer
	XP_017453949	(Get FASTA)	NCBI Sequence Viewer
	XP_017453950	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI67104	(Get FASTA)	NCBI Sequence Viewer
	EDM13733	(Get FASTA)	NCBI Sequence Viewer
	EDM13734	(Get FASTA)	NCBI Sequence Viewer
	EDM13735	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001153097 ⟸ NM_001159625

- UniProtKB:

B2RZC5 (UniProtKB/TrEMBL), F1LRF5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MALPLELFPAIQWIQFAVATLSVIGSSSLITYIVFQNPQKSAEVKSLLYLSFSDLLLGICWLIK
ALVYGTAAAHKDSICYNLQTAGEIFYLASLVFTVSYIWCLYAELRRKHSPSEQSTAAQVTDYAC
QGGCVMFLLSSLTPLLLMTPVFFLGNVNECFHNFSQNHRCMLMHSEPLPSTNTSVCSTLYLYGV
TVFLASFFFSLLTIVVLLVLAQTLYKKFVKSMGLLESEQWAVIHTVGQRVRFFPAAFVCCWGPA
VTLLIMKLTKPQETSLHVALSVLQALTAASQGLLNCGIYGWTQCKFQQIKREPPRDADTQTPLL
CSQKRVYSRSPSASRPPLAFASSSSTVL

hide sequence

RefSeq Acc Id:

XP_006249468 ⟸ XM_006249406

- Peptide Label:

isoform X2

- Sequence:

show sequence

MALPLEVSRLEGRWESLFPAIQWIQFAVATLSVIGSSSLITYIVFQNPQKSAEVKSLLYLSFSD
LLLGICWLIKALVYGTAAAHKDSICYNLQTAGEVTDYACQGGCVMFLLSSLTPLLLMTPVFFLG
NVNECFHNFSQNHRCMLMHSEPLPSTNTSVCSTLYLYGVTVFLASFFFSLLTIVVLLVLAQTLY
KKFVKSMGLLESEQWAVIHTVGQRVRFFPAAFVCCWGPAVTLLIMKLTKPQETSLHVALSVLQA
LTAASQGLLNCGIYGWTQCKFQQIKREPPRDADTQTPLLCSQKRVYSRSPSASRPPLAFASSSS
TVL

hide sequence

RefSeq Acc Id:

XP_006249466 ⟸ XM_006249404

- Peptide Label:

isoform X1

- Sequence:

show sequence

MALPLEVSRLEGRWESLFPAIQWIQFAVATLSVIGSSSLITYIVFQNPQKSAEVKSLLYLSFSD
LLLGICWLIKALVYGTAAAHKDSICYNLQTAGEIFYLASLVFTVSYIWCLYAELRRKHSPSEQS
TAAQVTDYACQGGCVMFLLSSLTPLLLMTPVFFLGNVNECFHNFSQNHRCMLMHSEPLPSTNTS
VCSTLYLYGVTVFLASFFFSLLTIVVLLVLAQTLYKKFVKSMGLLESEQWAVIHTVGQRVRFFP
AAFVCCWGPAVTLLIMKLTKPQETSLHVALSVLQALTAASQGLLNCGIYGWTQCKFQQIKREPP
RDADTQTPLLCSQKRVYSRSPSASRPPLAFASSSSTVL

hide sequence

RefSeq Acc Id:

XP_017453949 ⟸ XM_017598460

- Peptide Label:

isoform X3

- Sequence:

show sequence

MALPLEVSRLEGRWESLFPAIQWIQFAVATLSVIGSSSLITYIVFQNPQKSAEVKSLLYLSFSD
LLLGICWLIKALVYGTAAAHKDSICYNLQTAGEIFYLASLVFTVSYIWCLYAELRRKHSPSEQS
TAAQVTDYACQGGCVMFLLSSLTPLLLMTPVFFLGNVNECFHNFSQNHRCMLMHSEPLPSTNTS
VCSTLYLYGVTVFLASFFFSLLTIVVLLVLAQTLYKKFVKSMGLLESEQWAVIHTVGQRVRFFP
AAFVCCWGPAVTLLIMKLTKPQETSLHVALSVLQNNGPPQWIL

hide sequence

RefSeq Acc Id:

XP_017453950 ⟸ XM_017598461

- Peptide Label:

isoform X4

- Sequence:

show sequence

MFLLSSLTPLLLMTPVFFLGNVNECFHNFSQNHRCMLMHSEPLPSTNTSVCSTLYLYGVTVFLA
SFFFSLLTIVVLLVLAQTLYKKFVKSMGLLESEQWAVIHTVGQRVRFFPAAFVCCWGPAVTLLI
MKLTKPQETSLHVALSVLQALTAASQGLLNCGIYGWTQCKFQQIKREPPRDADTQTPLLCSQKR
VYSRSPSASRPPLAFASSSSTVL

hide sequence

RefSeq Acc Id:

ENSRNOP00000063208 ⟸ ENSRNOT00000067503

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1596066	AgrOrtholog
Ensembl Genes	ENSRNOG00000027480	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000063208	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000067503	ENTREZGENE, UniProtKB/TrEMBL
KEGG Report	rno:690442	UniProtKB/TrEMBL
NCBI Gene	690442	ENTREZGENE
PhenoGen	Tmem116	PhenoGen
UniGene	Rn.39141	ENTREZGENE
UniProt	B2RZC5	ENTREZGENE, UniProtKB/TrEMBL
	F1LRF5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2009-06-15	Tmem116	transmembrane protein 116	LOC690455	hypothetical protein LOC690455	Data Merged	737654	PROVISIONAL
2009-06-15	Tmem116	transmembrane protein 116	LOC687361	hypothetical protein LOC687361	Data Merged	1643240	APPROVED
2008-03-06	Tmem116	transmembrane protein 116	LOC690442	hypothetical protein LOC690442	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC690442	hypothetical protein LOC690442			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-20	LOC690455	hypothetical protein LOC690455			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC687361	hypothetical protein LOC687361			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)