Atp6v0a2 (ATPase H+ transporting V0 subunit a2)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer VCMap Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Atp6v0a2 (ATPase H+ transporting V0 subunit a2) Rattus norvegicus

Analyze

Symbol:

Atp6v0a2

Name:

ATPase H+ transporting V0 subunit a2

RGD ID:

621006

Description:

Predicted to enable ATP binding activity; minus-end-directed microtubule motor activity; and proton-transporting ATPase activity, rotational mechanism. Predicted to be involved in cellular iron ion homeostasis and cellular response to increased oxygen levels. Predicted to be located in several cellular components, including acrosomal vesicle; focal adhesion; and perinuclear region of cytoplasm. Predicted to be part of ATPase complex; proton-transporting V-type ATPase, V0 domain; and transmembrane transporter complex. Human ortholog(s) of this gene implicated in autosomal recessive cutis laxa type IIA and wrinkly skin syndrome. Orthologous to human ATP6V0A2 (ATPase H+ transporting V0 subunit a2); PARTICIPATES IN oxidative phosphorylation pathway; phagocytosis pathway; rheumatoid arthritis pathway; INTERACTS WITH 6-propyl-2-thiouracil; ammonium chloride; amphetamine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ATPase, H+ transporting, lysosomal V0 subunit a isoform 2; ATPase, H+ transporting, lysosomal V0 subunit A2; Cc1-3; J6b7; LOC304467; T-cell expressing clone j6; Tj6; V-type proton ATPase 116 kDa subunit a; V-type proton ATPase 116 kDa subunit a isoform 2; V-type proton ATPase 116 kDa subunit a2

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	12	31,949,863 - 31,979,777 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	31,822,733 - 32,007,069 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	33,129,001 - 33,158,515 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	12	33,740,320 - 33,769,838 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	12	32,792,188 - 32,821,709 (-)	NCBI	Rnor_WKY
Rnor_6.0	12	37,368,321 - 37,398,233 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	37,363,906 - 37,425,596 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	39,238,423 - 39,269,298 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	33,061,611 - 33,092,421 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	32,941,066 - 32,949,116 (-)	NCBI
Celera	12	33,639,711 - 33,670,024 (-)	NCBI		Celera
Cytogenetic Map	12	q15	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Autosomal Recessive Cutis Laxa (ISO)

autosomal recessive cutis laxa type IIA (ISO)

combined oxidative phosphorylation deficiency 7 (ISO)

congenital disorder of glycosylation Il (ISO)

cutis laxa (ISO)

Joubert syndrome (ISO)

Joubert syndrome 24 (ISO)

Meckel syndrome (ISO)

Meckel syndrome 8 (ISO)

paraplegia (ISO)

wrinkly skin syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

amphetamine (EXP)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

clofibrate (ISO)

cobalt dichloride (EXP)

cyclosporin A (ISO)

daidzein (ISO)

dextran sulfate (ISO)

diazinon (ISO)

dorsomorphin (ISO)

entinostat (ISO)

epoxiconazole (ISO)

ethanol (ISO)

folic acid (ISO)

genistein (EXP,ISO)

glycitein (ISO)

glyphosate (ISO)

hydroxyurea (ISO)

lead(0) (ISO)

lead(2+) (ISO)

N,N-diethyl-m-toluamide (EXP)

panobinostat (ISO)

paracetamol (ISO)

permethrin (EXP)

phenobarbital (ISO)

pirinixic acid (ISO)

Pyridostigmine bromide (EXP)

quinolin-8-ol (ISO)

rac-lactic acid (ISO)

rotenone (ISO)

sarin (ISO)

SB 431542 (ISO)

sunitinib (ISO)

tamibarotene (ISO)

temozolomide (ISO)

testosterone (ISO)

thapsigargin (ISO)

titanium dioxide (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell projection organization (IEA)

cellular iron ion homeostasis (ISO)

cellular response to increased oxygen levels (ISO)

microtubule-based movement (IEA)

proton transmembrane transport (IEA)

Cellular Component

acrosomal vesicle (ISO)

ATPase complex (ISO)

axoneme (IEA)

dynein complex (IEA)

focal adhesion (ISO)

intracellular membrane-bounded organelle (ISO)

intracellular organelle (ISO)

microtubule (IEA)

motile cilium (IEA)

perinuclear region of cytoplasm (ISO)

plasma membrane (ISO)

proton-transporting V-type ATPase complex (ISO)

proton-transporting V-type ATPase, V0 domain (IEA,ISO)

transmembrane transporter complex (ISO)

vacuolar proton-transporting V-type ATPase, V0 domain (IEA)

Molecular Function

ATP binding (IEA)

minus-end-directed microtubule motor activity (IEA)

protein binding (ISO)

proton-transporting ATPase activity, rotational mechanism (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

oxidative phosphorylation pathway (IEA)

phagocytosis pathway (IEA)

rheumatoid arthritis pathway (IEA)

tuberculosis pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	Immunization with an antigen identified by cytokine tumor vaccine-assisted SEREX (CAS) suppressed growth of the rat 9L glioma in vivo.	Okada H, etal., Cancer Res 2001 Mar 15;61(6):2625-31.
5.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
6.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11872743	PMID:12477932	PMID:12672822	PMID:15326124	PMID:16621796	PMID:17897319	PMID:19549681	PMID:21795392	PMID:28296633

Genomics

Comparative Map Data

Atp6v0a2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	12	31,949,863 - 31,979,777 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	31,822,733 - 32,007,069 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	33,129,001 - 33,158,515 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	12	33,740,320 - 33,769,838 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	12	32,792,188 - 32,821,709 (-)	NCBI	Rnor_WKY
Rnor_6.0	12	37,368,321 - 37,398,233 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	37,363,906 - 37,425,596 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	39,238,423 - 39,269,298 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	33,061,611 - 33,092,421 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	32,941,066 - 32,949,116 (-)	NCBI
Celera	12	33,639,711 - 33,670,024 (-)	NCBI		Celera
Cytogenetic Map	12	q15	NCBI

ATP6V0A2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	123,712,353 - 123,761,755 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	12	123,712,353 - 123,761,755 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	124,196,900 - 124,246,302 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	122,762,818 - 122,810,394 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	122,721,744 - 122,769,321	NCBI
Celera	12	123,793,121 - 123,842,693 (+)	NCBI		Celera
Cytogenetic Map	12	q24.31	NCBI
HuRef	12	121,158,054 - 121,207,491 (+)	NCBI		HuRef
CHM1_1	12	124,017,815 - 124,067,195 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	123,711,219 - 123,760,679 (+)	NCBI		T2T-CHM13v2.0

Atp6v0a2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	124,767,117 - 124,801,519 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	124,766,641 - 124,801,519 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	124,629,052 - 124,724,455 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	124,628,576 - 124,724,455 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	125,079,648 - 125,097,437 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv37	5	125,192,573 - 125,202,524 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	125,001,189 - 125,011,627 (+)	NCBI		MGSCv36	mm8
Celera	5	121,704,480 - 121,735,509 (+)	NCBI		Celera
Cytogenetic Map	5	F	NCBI

Atp6v0a2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	5,311,434 - 5,337,697 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955482	5,311,434 - 5,337,684 (-)	NCBI	ChiLan1.0	ChiLan1.0

ATP6V0A2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	12	125,522,886 - 125,569,858 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	125,522,886 - 125,569,858 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	12	121,297,959 - 121,343,294 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

ATP6V0A2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	5,911,319 - 5,952,773 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	5,912,887 - 5,952,306 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	6,074,169 - 6,115,619 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	6,161,361 - 6,202,794 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	6,162,010 - 6,229,946 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	6,094,884 - 6,136,318 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	6,187,243 - 6,228,453 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	6,140,432 - 6,181,874 (-)	NCBI		UU_Cfam_GSD_1.0

Atp6v0a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	158,344,853 - 158,374,799 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936558	1,104,627 - 1,138,487 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATP6V0A2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	29,250,405 - 29,297,683 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	29,250,400 - 29,297,697 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	30,944,213 - 30,989,982 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ATP6V0A2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	119,042,465 - 119,095,380 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	119,042,525 - 119,097,450 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	126,179,187 - 126,233,498 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atp6v0a2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	23,471,403 - 23,504,576 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	23,471,697 - 23,501,018 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Position Markers

BF395959

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	31,986,499 - 31,986,623 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	37,404,956 - 37,405,079	NCBI	Rnor6.0
Rnor_5.0	12	39,276,021 - 39,276,144	UniSTS	Rnor5.0
RGSC_v3.4	12	33,099,144 - 33,099,267	UniSTS	RGSC3.4
Celera	12	33,676,746 - 33,676,869	UniSTS
RH 3.4 Map	12	550.9	UniSTS
Cytogenetic Map	12	q15	UniSTS

RH141592

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	31,947,277 - 31,947,462 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	37,365,736 - 37,365,920	NCBI	Rnor6.0
Rnor_5.0	12	39,235,838 - 39,236,022	UniSTS	Rnor5.0
RGSC_v3.4	12	33,059,026 - 33,059,210	UniSTS	RGSC3.4
Celera	12	33,637,126 - 33,637,310	UniSTS
RH 3.4 Map	12	558.8	UniSTS
Cytogenetic Map	12	q15	UniSTS

BE110564

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	31,949,576 - 31,949,736 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	37,368,035 - 37,368,194	NCBI	Rnor6.0
Rnor_5.0	12	39,238,137 - 39,238,296	UniSTS	Rnor5.0
RGSC_v3.4	12	33,061,325 - 33,061,484	UniSTS	RGSC3.4
Celera	12	33,639,425 - 33,639,584	UniSTS
RH 3.4 Map	12	568.11	UniSTS
Cytogenetic Map	12	q15	UniSTS

RH141862

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	31,949,162 - 31,949,361 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	37,367,621 - 37,367,819	NCBI	Rnor6.0
Rnor_5.0	12	39,237,723 - 39,237,921	UniSTS	Rnor5.0
RGSC_v3.4	12	33,060,911 - 33,061,109	UniSTS	RGSC3.4
Celera	12	33,639,011 - 33,639,209	UniSTS
RH 3.4 Map	12	565.9	UniSTS
Cytogenetic Map	12	q15	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598855	Bp294	Blood pressure QTL 294	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	1	34851688	Rat
7411660	Foco28	Food consumption QTL 28	10.9	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
9590086	Insglur6	Insulin/glucose ratio QTL 6	18.97	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	12	1	42110980	Rat
8694179	Bw150	Body weight QTL 150	2.9	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
7411586	Foco5	Food consumption QTL 5	5.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411595	Foco9	Food consumption QTL 9	4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411545	Bw128	Body weight QTL 128	5.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
9590147	Scort7	Serum corticosterone level QTL 7	13.61	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	12	1	42110980	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	1	42450532	Rat
737979	Pia22	Pristane induced arthritis QTL 22	53.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	1	44465750	Rat
634351	Apr5	Acute phase response QTL 5	6.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	12	1	44503507	Rat
2302042	Pia38	Pristane induced arthritis QTL 38	3.5	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	1	44503507	Rat
634350	Apr4	Acute phase response QTL 4	6		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	1172005	46172005	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	5564495	46669029	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564498	46669029	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	6107579	46669029	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	7196730	46669029	Rat
1300157	Rf21	Renal function QTL 21	4.4		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	12	9318216	32103380	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	9603277	46669029	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	10474137	46669029	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	10474137	46669029	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	45055165	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	12351619	46669029	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	12812385	46669029	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	12812385	46669029	Rat
1549902	Bp269	Blood pressure QTL 269			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	13182736	46669029	Rat
1549912	Bp268	Blood pressure QTL 268			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	13182736	46669029	Rat
2302060	Pia37	Pristane induced arthritis QTL 37	6.1	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	13198157	46669029	Rat
61421	Cia12	Collagen induced arthritis QTL 12	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	13635523	35682913	Rat
631543	Bp83	Blood pressure QTL 83	5.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	15550826	38478808	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	15872653	32974238	Rat
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	19144362	46669029	Rat
737822	Alc10	Alcohol consumption QTL 10	2.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	12	19610870	40218516	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	19610870	42828880	Rat
61324	Eae5	Experimental allergic encephalomyelitis QTL 5	14		nervous system integrity trait (VT:0010566)	percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)	12	19610870	46669029	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	19610889	35682913	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	19835789	38193007	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	20328819	46669029	Rat
70169	Eae13	Experimental allergic encephalomyelitis QTL 13		0.032	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	12	24139202	36638073	Rat
1556747	Calcic1	Intracellular calcium level QTL 1		3.6	platelet calcium amount (VT:0010500)	platelet intracellular calcium level (CMO:0000922)	12	28064433	40130419	Rat
1300175	Cm5	Cardiac mass QTL 5	3.78		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	28064433	45899022	Rat
1600386	Calcic2	Intracellular calcium level QTL 2		0.001	platelet physiology trait (VT:0005464)	platelet intracellular calcium level (CMO:0000922)	12	28064433	46669029	Rat
1331787	Rf41	Renal function QTL 41	2.998		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	12	28064557	40218380	Rat
631829	Alc6	Alcohol consumption QTL 6	4.7		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	12	28607526	37691617	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	255
Count of miRNA genes:	160
Interacting mature miRNAs:	183
Transcripts:	ENSRNOT00000001349, ENSRNOT00000049316, ENSRNOT00000057966
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	24	19	6	18	6			70	24	40	11
Low		19	38	35	1	35	8	11	4	11	1		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053775	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC127646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF118854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC098791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC168659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ286425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DV216525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000083401 ⟹ ENSRNOP00000068905

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	31,949,022 - 31,979,862 (-)	Ensembl
Rnor_6.0 Ensembl	12	37,367,474 - 37,398,329 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000084553 ⟹ ENSRNOP00000072568

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	31,982,730 - 32,007,050 (-)	Ensembl
Rnor_6.0 Ensembl	12	37,401,186 - 37,425,596 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000087698 ⟹ ENSRNOP00000073487

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	31,946,465 - 32,007,069 (-)	Ensembl
Rnor_6.0 Ensembl	12	37,363,906 - 37,411,525 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000106066 ⟹ ENSRNOP00000084529

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	31,823,454 - 31,993,069 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000106704 ⟹ ENSRNOP00000097523

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	31,822,733 - 31,993,069 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000108577 ⟹ ENSRNOP00000095339

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	31,822,880 - 32,007,069 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000110165 ⟹ ENSRNOP00000093343

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	31,982,730 - 32,007,050 (-)	Ensembl

RefSeq Acc Id:

NM_053775 ⟹ NP_446227

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	31,949,863 - 31,979,777 (-)	NCBI
Rnor_6.0	12	37,368,321 - 37,398,233 (-)	NCBI
Rnor_5.0	12	39,238,423 - 39,269,298 (-)	NCBI
RGSC_v3.4	12	33,061,611 - 33,092,421 (-)	RGD
Celera	12	33,639,711 - 33,670,024 (-)	RGD

Sequence:

show sequence

ATGGGCTCCCTCTTCCGTAGCGAGAGCATGTGCCTGGCGCAGCTCTTCCTGCAGTCGGGCACGG
CCTACGAGTGTCTGAGCGCGCTTGGCGAGAAGGGCCTGGTGCAGTTCCGAGACCTCAACCAAAA
TGTAAGTTCTTTCCAAAGAAAATTCGTTGGTGAGGTAAAGAGGTGTGAAGAACTAGAACGAATA
TTGGTGTACCTGGTGCAGGAAATCACCAGAGCTGATATTCCCCTGCCTGAGGGAGAGGCCAGTC
CTCCCGCACCACCTGTTAAACATGTTCTAGAAATGCAGGAGCAGCTGCAGAAGCTCGAGGTGGA
GCTCAGAGAAGTCACCAAGAACAAGGAGAAGCTGAGGAAGAACCTGCTGGAGCTGGTGGAGTAT
ACCCACATGCTGAGGGTCACCAAGACCTTCCTTAAACGGAACGTGGAGTTTGAGCCAACTTACG
AAGAGTTCCCCGCCTTAGAGAGCGACTCTCTGTTGGACTACAGCTGCATGCAGCGGCTGGGCGC
CAAGCTGGGATTCGTTTCTGGCCTGATTCAGCAAGGCAAAGTGGAAGCATTTGAAAGAATGCTG
TGGCGGGCCTGCAAAGGGTACACCATTGTGACCTATGCAGAGCTGGACGAGGCCCTGGAAGACC
CTGAGACGGGTGAAGTCATAAAGTGGTATGTGTTCCTGATCTCGTTTTGGGGAGAGCAGATTGG
CCACAAGGTTAAGAAGATCTGTGACTGTTACCACTGCCACATCTACCCGTATCCAAACACGGCC
GAGGAGCGCAGGGAGATCCAGGAGGGGCTCAATACTCGGATCCAAGACCTTTACACTGTGCTGC
ACAAAACGGAGGACTACCTGCGGCAAGTGCTGTGCAAGGCTGCCGAGTCCGTGTGCAGCCGTGT
GATACAGGTGCGGAAGATGAAAGCCATCTACCACATGCTCAACATGTGCAGCTTTGACGTCACC
AACAAGTGCCTCATAGCTGAGGTCTGGTGCCCCGAGGTGGACCTGCCCGGCTTGCGCAGAGCGC
TGGAGGAAGGCTCGAGAGAAAGTGGAGCTACAATCCCCTCGTTCATGAACACAATCCCTACGAA
AGAAACGCCGCCCACTCTGATCCGCACCAACAAATTCACTGAAGGTTTCCAGAACATCGTGGAT
GCCTACGGTGTTGGGAGCTACAGAGAAGTGAACCCAGCTTTGTTCACCATCATCACCTTCCCGT
TCCTGTTTGGCGTGATGTTTGGTGACTTGGGGCACGGCTTTGTCATGTTCCTGTTTGCCCTCTT
ACTGGTGTTGAATGAGAATCACCCCAGACTAAGCCAGTCACAGGAGATCCTTAGGATGTTCTTT
GATGGCCGATATATCCTGCTGCTGATGGGGCTGTTCTCCGTGTACACCGGCCTCATCTACAACG
ACTGCTTCTCCAAGTCCCTGAACCTCTTTGGCTCTGGGTGGAACGTGTCTGCCATGTACAGTTC
CAGCCACTCCCCAGAGGAGCAAAGGAAAATGGTGCTTTGGAATGACAGCACCATCAGGCACAGC
AGGACGCTGCAGCTGGACCCAAACATCCCTGGAGTTTTCCGAGGCCCCTACCCTTTCGGCATCG
ATCCTATTTGGAACCTGGCCACAAATCGCCTCACGTTCCTCAACTCCTTCAAGATGAAGATGTC
TGTGATTTTAGGAATTTTTCACATGACCTTTGGTGTCATTCTGGGAATATTTAACCACTTGCAC
TTCAGGAAGAAGTTCAACATCTACCTGGTCTCGGTCCCCGAGATCCTGTTTATGCTCTGCATCT
TTGGGTACCTGATTTTCATGATCATCTACAAGTGGCTGGCGTACTCGGCAGAGACCTCCAGAGA
GGCCCCCAGCATCCTCATCGAGTTCATTAACATGTTCCTGTTCCCGTCCAGTGAGACACACGGC
CTCTACCCGGGGCAGGCACACGTCCAGAAGGTGTTGTTGGCTCTCACCGTGCTGGCTGTCCCTG
TGCTCTTCTTGGGAAAGCCGCTCTTTCTGCTGTGGCTGCACAATGGGCGCAGTTGCTTCGGCGT
GAGCCGGAGCGGCTACACGCTCGTGAGGAAGGACAGCGAGGAAGAGGTGTCTCTCCTAGGCAGC
CAGGACATAGAGGAGGGGAACAACCGCATGGAAGAGGGCTGCCGAGAAATGACCTGTGAGGAGT
TTAACTTCGGGGAGATCCTGATGACTCAGGCCATCCACTCCATCGAGTACTGCCTTGGCTGCAT
CTCCAACACTGCGTCCTACCTGAGGCTTTGGGCTCTCAGCCTGGCACACGCACAGCTCTCGGAT
GTGCTGTGGGCCATGCTGATGCGTGTAGGCCTGCGTGTGGACAACACTTACGGGGTCCTGCTGC
TGCTGCCCGTCATGACTTTCTTTGCAGTTCTGACCGTTTTTATCCTTCTGGTCATGGAAGGGCT
TTCTGCATTTCTCCACGCCATCCGGCTTCACTGGGTAGAATTTCAGAACAAATTCTACGTTGGT
GCAGGTACCAAATTCGTTCCTTTCTCCTTCAGTCTGCTGTCCTCCAAGTTCAGTAAAGATGACA
GCATAGCATGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_446227	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD45408	(Get FASTA)	NCBI Sequence Viewer
	AAH98791	(Get FASTA)	NCBI Sequence Viewer
	AAI68659	(Get FASTA)	NCBI Sequence Viewer
	ABB91444	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_446227 ⟸ NM_053775

- UniProtKB:

Q2I6B1 (UniProtKB/TrEMBL), F1LQ38 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGSLFRSESMCLAQLFLQSGTAYECLSALGEKGLVQFRDLNQNVSSFQRKFVGEVKRCEELERI
LVYLVQEITRADIPLPEGEASPPAPPVKHVLEMQEQLQKLEVELREVTKNKEKLRKNLLELVEY
THMLRVTKTFLKRNVEFEPTYEEFPALESDSLLDYSCMQRLGAKLGFVSGLIQQGKVEAFERML
WRACKGYTIVTYAELDEALEDPETGEVIKWYVFLISFWGEQIGHKVKKICDCYHCHIYPYPNTA
EERREIQEGLNTRIQDLYTVLHKTEDYLRQVLCKAAESVCSRVIQVRKMKAIYHMLNMCSFDVT
NKCLIAEVWCPEVDLPGLRRALEEGSRESGATIPSFMNTIPTKETPPTLIRTNKFTEGFQNIVD
AYGVGSYREVNPALFTIITFPFLFGVMFGDLGHGFVMFLFALLLVLNENHPRLSQSQEILRMFF
DGRYILLLMGLFSVYTGLIYNDCFSKSLNLFGSGWNVSAMYSSSHSPEEQRKMVLWNDSTIRHS
RTLQLDPNIPGVFRGPYPFGIDPIWNLATNRLTFLNSFKMKMSVILGIFHMTFGVILGIFNHLH
FRKKFNIYLVSVPEILFMLCIFGYLIFMIIYKWLAYSAETSREAPSILIEFINMFLFPSSETHG
LYPGQAHVQKVLLALTVLAVPVLFLGKPLFLLWLHNGRSCFGVSRSGYTLVRKDSEEEVSLLGS
QDIEEGNNRMEEGCREMTCEEFNFGEILMTQAIHSIEYCLGCISNTASYLRLWALSLAHAQLSD
VLWAMLMRVGLRVDNTYGVLLLLPVMTFFAVLTVFILLVMEGLSAFLHAIRLHWVEFQNKFYVG
AGTKFVPFSFSLLSSKFSKDDSIA

hide sequence

RefSeq Acc Id:

ENSRNOP00000072568 ⟸ ENSRNOT00000084553

RefSeq Acc Id:

ENSRNOP00000073487 ⟸ ENSRNOT00000087698

RefSeq Acc Id:

ENSRNOP00000068905 ⟸ ENSRNOT00000083401

RefSeq Acc Id:

ENSRNOP00000095339 ⟸ ENSRNOT00000108577

RefSeq Acc Id:

ENSRNOP00000093343 ⟸ ENSRNOT00000110165

RefSeq Acc Id:

ENSRNOP00000084529 ⟸ ENSRNOT00000106066

RefSeq Acc Id:

ENSRNOP00000097523 ⟸ ENSRNOT00000106704

Protein Domains

AAA DUF1619

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698605

Promoter ID:

EPDNEW_R9129

Type:

multiple initiation site

Name:

Tctn2_1

Description:

tectonic family member 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R9130

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	37,398,331 - 37,398,391	EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)

ACI/EurMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN-Lx/CubMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BUF/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

DA/OlaHsd (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/Stm (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE16/Stm (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/FarMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB10/IpcvMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF10A/StmMcwi (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrcAek (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrcAek (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrcAek (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/NRrrcMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MWF/Hsd (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHR/OlalpcvMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WAG/RijCrl (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621006	AgrOrtholog
BioCyc Gene	G2FUF-19365	BioCyc
BioCyc Pathway	PWY-7980 [ATP biosynthesis]	BioCyc
Ensembl Genes	ENSRNOG00000052704	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000068905	ENTREZGENE
	ENSRNOP00000068905.1	UniProtKB/TrEMBL
	ENSRNOP00000073487.2	UniProtKB/TrEMBL
	ENSRNOP00000084529.1	UniProtKB/TrEMBL
	ENSRNOP00000093343.1	UniProtKB/TrEMBL
	ENSRNOP00000095339.1	UniProtKB/TrEMBL
	ENSRNOP00000097523.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000083401	ENTREZGENE
	ENSRNOT00000083401.2	UniProtKB/TrEMBL
	ENSRNOT00000087698.2	UniProtKB/TrEMBL
	ENSRNOT00000106066.1	UniProtKB/TrEMBL
	ENSRNOT00000106704.1	UniProtKB/TrEMBL
	ENSRNOT00000108577.1	UniProtKB/TrEMBL
	ENSRNOT00000110165.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.8.710	UniProtKB/TrEMBL
	1.10.8.720	UniProtKB/TrEMBL
	1.20.140.100	UniProtKB/TrEMBL
	3.10.490.20	UniProtKB/TrEMBL
	3.20.180.20	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7375616	IMAGE-MGC_LOAD
InterPro	AAA+_ATPase	UniProtKB/TrEMBL
	AAA_6	UniProtKB/TrEMBL
	AAA_9	UniProtKB/TrEMBL
	AAA_lid_11	UniProtKB/TrEMBL
	AAA_lid_11_sf	UniProtKB/TrEMBL
	ATPase_V0/A0-cplx_116kDa_su	UniProtKB/TrEMBL
	DNAH3_AAA_lid_1	UniProtKB/TrEMBL
	DUF1619	UniProtKB/TrEMBL
	Dynein_2_N	UniProtKB/TrEMBL
	Dynein_AAA1S	UniProtKB/TrEMBL
	Dynein_AAA5_ext	UniProtKB/TrEMBL
	Dynein_C	UniProtKB/TrEMBL
	Dynein_C_barrel	UniProtKB/TrEMBL
	Dynein_HC_stalk	UniProtKB/TrEMBL
	Dynein_heavy_chain_D4_dom	UniProtKB/TrEMBL
	Dynein_heavy_D6_P-loop	UniProtKB/TrEMBL
	Dynein_heavy_linker	UniProtKB/TrEMBL
	Dynein_heavy_tail	UniProtKB/TrEMBL
	Dynein_linker_3	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	Tectonic	UniProtKB/TrEMBL
	V-type_ATPase_116kDa_su_euka	UniProtKB/TrEMBL
KEGG Report	rno:116455	UniProtKB/TrEMBL
MGC_CLONE	MGC:112832	IMAGE-MGC_LOAD
NCBI Gene	116455	ENTREZGENE
PANTHER	ATPase_V0/A0_116	UniProtKB/TrEMBL
	PTHR14611	UniProtKB/TrEMBL
Pfam	AAA_6	UniProtKB/TrEMBL
	AAA_8	UniProtKB/TrEMBL
	AAA_9	UniProtKB/TrEMBL
	AAA_lid_1	UniProtKB/TrEMBL
	AAA_lid_11	UniProtKB/TrEMBL
	DHC_N1	UniProtKB/TrEMBL
	DHC_N2	UniProtKB/TrEMBL
	DUF1619	UniProtKB/TrEMBL
	Dynein_AAA_lid	UniProtKB/TrEMBL
	Dynein_C	UniProtKB/TrEMBL
	Dynein_heavy	UniProtKB/TrEMBL
	PF12777	UniProtKB/TrEMBL
	V_ATPase_I	UniProtKB/TrEMBL
PhenoGen	Atp6v0a2	PhenoGen
PIRSF	ATP6V0A1	UniProtKB/TrEMBL
SMART	AAA	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A0G2K5M9_RAT	UniProtKB/TrEMBL
	A0A8I6A269_RAT	UniProtKB/TrEMBL
	A0A8I6GK91_RAT	UniProtKB/TrEMBL
	A0A8I6GMJ7_RAT	UniProtKB/TrEMBL
	F1LQ38	ENTREZGENE
	Q2I6B1	ENTREZGENE, UniProtKB/TrEMBL
	Q4G036_RAT	UniProtKB/TrEMBL
	Q7TP16_RAT	UniProtKB/TrEMBL
UniProt Secondary	F1LQ38	UniProtKB/TrEMBL
	F1LR83	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Atp6v0a2	ATPase H+ transporting V0 subunit a2	Atp6v0a2	ATPase, H+ transporting, lysosomal V0 subunit A2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-22	Atp6v0a2	ATPase, H+ transporting, lysosomal V0 subunit A2	Atp6v0a2	ATPase, H+ transporting, lysosomal V0 subunit a isoform 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-29	Atp6v0a2	ATPase, H+ transporting, lysosomal V0 subunit a isoform 2	Atp6v0a2_predicted	ATPase, H+ transporting, lysosomal V0 subunit a isoform 2 (predicted)	Data Merged	737654	APPROVED
2005-07-08	Atp6v0a2	ATPase, H+ transporting, lysosomal V0 subunit a isoform 2	Tj6	T-cell expressing clone j6	Symbol and Name updated	1299863	APPROVED
2005-01-12	Atp6v0a2_predicted	ATPase, H+ transporting, lysosomal V0 subunit a isoform 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED
2002-08-07	Tj6	T-cell expressing clone j6			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)