Atp6v0a2 (ATPase H+ transporting V0 subunit a2) - Rat Genome Database

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Gene: Atp6v0a2 (ATPase H+ transporting V0 subunit a2) Rattus norvegicus
Analyze
Symbol: Atp6v0a2
Name: ATPase H+ transporting V0 subunit a2
RGD ID: 621006
Description: Predicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to be involved in cellular response to increased oxygen levels and intracellular iron ion homeostasis. Predicted to be located in several cellular components, including acrosomal vesicle; focal adhesion; and perinuclear region of cytoplasm. Predicted to be part of proton-transporting V-type ATPase, V0 domain. Human ortholog(s) of this gene implicated in autosomal recessive cutis laxa type IIA and wrinkly skin syndrome. Orthologous to human ATP6V0A2 (ATPase H+ transporting V0 subunit a2); PARTICIPATES IN oxidative phosphorylation pathway; phagocytosis pathway; rheumatoid arthritis pathway; INTERACTS WITH 6-propyl-2-thiouracil; ammonium chloride; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ATPase, H+ transporting, lysosomal V0 subunit a isoform 2; ATPase, H+ transporting, lysosomal V0 subunit A2; Cc1-3; J6b7; LOC304467; T-cell expressing clone j6; Tj6; V-type proton ATPase 116 kDa subunit a; V-type proton ATPase 116 kDa subunit a 2; V-type proton ATPase 116 kDa subunit a isoform 2; V-type proton ATPase 116 kDa subunit a2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81237,608,211 - 37,640,860 (-)NCBIGRCr8
mRatBN7.21231,947,220 - 31,979,875 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1231,822,733 - 32,007,069 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1233,129,001 - 33,158,515 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01233,740,320 - 33,769,838 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01232,792,188 - 32,821,709 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01237,368,321 - 37,398,233 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1237,363,906 - 37,425,596 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01239,238,423 - 39,269,298 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,061,611 - 33,092,421 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11232,941,066 - 32,949,116 (-)NCBI
Celera1233,639,711 - 33,670,024 (-)NCBICelera
Cytogenetic Map12q15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. Immunization with an antigen identified by cytokine tumor vaccine-assisted SEREX (CAS) suppressed growth of the rat 9L glioma in vivo. Okada H, etal., Cancer Res 2001 Mar 15;61(6):2625-31.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11872743   PMID:12477932   PMID:12672822   PMID:15326124   PMID:16621796   PMID:17897319   PMID:19549681   PMID:21795392   PMID:28296633  


Genomics

Comparative Map Data
Atp6v0a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81237,608,211 - 37,640,860 (-)NCBIGRCr8
mRatBN7.21231,947,220 - 31,979,875 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1231,822,733 - 32,007,069 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1233,129,001 - 33,158,515 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01233,740,320 - 33,769,838 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01232,792,188 - 32,821,709 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01237,368,321 - 37,398,233 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1237,363,906 - 37,425,596 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01239,238,423 - 39,269,298 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,061,611 - 33,092,421 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11232,941,066 - 32,949,116 (-)NCBI
Celera1233,639,711 - 33,670,024 (-)NCBICelera
Cytogenetic Map12q15NCBI
ATP6V0A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812123,712,353 - 123,761,755 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12123,712,353 - 123,761,755 (+)EnsemblGRCh38hg38GRCh38
GRCh3712124,196,900 - 124,246,302 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612122,762,818 - 122,810,394 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412122,721,744 - 122,769,321NCBI
Celera12123,793,121 - 123,842,693 (+)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12121,158,054 - 121,207,491 (+)NCBIHuRef
CHM1_112124,017,815 - 124,067,195 (+)NCBICHM1_1
T2T-CHM13v2.012123,711,219 - 123,760,679 (+)NCBIT2T-CHM13v2.0
Atp6v0a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,767,117 - 124,801,519 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5124,766,641 - 124,801,519 (+)EnsemblGRCm39 Ensembl
GRCm385124,629,052 - 124,724,455 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5124,628,576 - 124,724,455 (+)EnsemblGRCm38mm10GRCm38
MGSCv375125,079,648 - 125,097,437 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv375125,192,573 - 125,202,524 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365125,001,189 - 125,011,627 (+)NCBIMGSCv36mm8
Celera5121,704,480 - 121,735,509 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.7NCBI
Atp6v0a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554825,311,434 - 5,337,697 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554825,311,434 - 5,337,684 (-)NCBIChiLan1.0ChiLan1.0
ATP6V0A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210131,787,497 - 131,834,937 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112131,783,904 - 131,831,213 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012121,297,959 - 121,343,294 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112125,522,886 - 125,569,858 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12125,522,886 - 125,569,858 (+)Ensemblpanpan1.1panPan2
ATP6V0A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1265,911,319 - 5,952,773 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl265,912,887 - 5,952,306 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,074,169 - 6,115,619 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0266,161,361 - 6,202,794 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl266,162,010 - 6,229,946 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,094,884 - 6,136,318 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0266,187,243 - 6,228,453 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0266,140,432 - 6,181,874 (-)NCBIUU_Cfam_GSD_1.0
Atp6v0a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118158,344,853 - 158,374,799 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365581,103,135 - 1,134,573 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365581,104,627 - 1,138,487 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V0A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1429,250,405 - 29,297,683 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11429,250,400 - 29,297,697 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21430,944,213 - 30,989,982 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V0A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111119,042,465 - 119,095,380 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11119,042,525 - 119,097,450 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037126,179,187 - 126,233,498 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6v0a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474723,471,403 - 23,504,576 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474723,471,697 - 23,501,018 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atp6v0a2
226 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:255
Count of miRNA genes:160
Interacting mature miRNAs:183
Transcripts:ENSRNOT00000001349, ENSRNOT00000049316, ENSRNOT00000057966
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122308134044726024Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122413920236638073Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)122806443346669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
1556747Calcic1Intracellular calcium level QTL 13.6platelet calcium amount (VT:0010500)platelet intracellular calcium level (CMO:0000922)122806443340130419Rat
631829Alc6Alcohol consumption QTL 64.7consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)122860752637691617Rat
8693658Alc33Alcohol consumption QTL 332.10.68drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122308134043551788Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961088935682913Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121983578938193007Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)122806443345899022Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)122806455740218380Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12136247923Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat

Markers in Region
BF395959  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21231,986,499 - 31,986,623 (+)MAPPERmRatBN7.2
Rnor_6.01237,404,956 - 37,405,079NCBIRnor6.0
Rnor_5.01239,276,021 - 39,276,144UniSTSRnor5.0
RGSC_v3.41233,099,144 - 33,099,267UniSTSRGSC3.4
Celera1233,676,746 - 33,676,869UniSTS
RH 3.4 Map12550.9UniSTS
Cytogenetic Map12q15UniSTS
RH141592  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21231,947,277 - 31,947,462 (+)MAPPERmRatBN7.2
Rnor_6.01237,365,736 - 37,365,920NCBIRnor6.0
Rnor_5.01239,235,838 - 39,236,022UniSTSRnor5.0
RGSC_v3.41233,059,026 - 33,059,210UniSTSRGSC3.4
Celera1233,637,126 - 33,637,310UniSTS
RH 3.4 Map12558.8UniSTS
Cytogenetic Map12q15UniSTS
BE110564  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21231,949,576 - 31,949,736 (+)MAPPERmRatBN7.2
Rnor_6.01237,368,035 - 37,368,194NCBIRnor6.0
Rnor_5.01239,238,137 - 39,238,296UniSTSRnor5.0
RGSC_v3.41233,061,325 - 33,061,484UniSTSRGSC3.4
Celera1233,639,425 - 33,639,584UniSTS
RH 3.4 Map12568.11UniSTS
Cytogenetic Map12q15UniSTS
RH141862  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21231,949,162 - 31,949,361 (+)MAPPERmRatBN7.2
Rnor_6.01237,367,621 - 37,367,819NCBIRnor6.0
Rnor_5.01239,237,723 - 39,237,921UniSTSRnor5.0
RGSC_v3.41233,060,911 - 33,061,109UniSTSRGSC3.4
Celera1233,639,011 - 33,639,209UniSTS
RH 3.4 Map12565.9UniSTS
Cytogenetic Map12q15UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
3 11 43 82 57 60 41 19 41 160 73 74 35 41 19

Sequence


Ensembl Acc Id: ENSRNOT00000083401   ⟹   ENSRNOP00000068905
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1231,949,022 - 31,979,862 (-)Ensembl
Rnor_6.0 Ensembl1237,367,474 - 37,398,329 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084553   ⟹   ENSRNOP00000072568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1231,982,730 - 32,007,050 (-)Ensembl
Rnor_6.0 Ensembl1237,401,186 - 37,425,596 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000087698   ⟹   ENSRNOP00000073487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1231,946,465 - 32,007,069 (-)Ensembl
Rnor_6.0 Ensembl1237,363,906 - 37,411,525 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106066   ⟹   ENSRNOP00000084529
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1231,823,454 - 31,993,069 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106704   ⟹   ENSRNOP00000097523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1231,822,733 - 31,993,069 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108577   ⟹   ENSRNOP00000095339
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1231,822,880 - 32,007,069 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110165   ⟹   ENSRNOP00000093343
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1231,982,730 - 32,007,050 (-)Ensembl
RefSeq Acc Id: NM_053775   ⟹   NP_446227
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,608,211 - 37,640,860 (-)NCBI
mRatBN7.21231,947,220 - 31,979,875 (-)NCBI
Rnor_6.01237,368,321 - 37,398,233 (-)NCBI
Rnor_5.01239,238,423 - 39,269,298 (-)NCBI
RGSC_v3.41233,061,611 - 33,092,421 (-)RGD
Celera1233,639,711 - 33,670,024 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_446227 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD45408 (Get FASTA)   NCBI Sequence Viewer  
  AAH98791 (Get FASTA)   NCBI Sequence Viewer  
  AAI68659 (Get FASTA)   NCBI Sequence Viewer  
  ABB91444 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000068905.1
  ENSRNOP00000073487.2
  ENSRNOP00000095339.1
RefSeq Acc Id: NP_446227   ⟸   NM_053775
- UniProtKB: Q2I6B1 (UniProtKB/TrEMBL),   F1LQ38 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072568   ⟸   ENSRNOT00000084553
Ensembl Acc Id: ENSRNOP00000073487   ⟸   ENSRNOT00000087698
Ensembl Acc Id: ENSRNOP00000068905   ⟸   ENSRNOT00000083401
Ensembl Acc Id: ENSRNOP00000095339   ⟸   ENSRNOT00000108577
Ensembl Acc Id: ENSRNOP00000093343   ⟸   ENSRNOT00000110165
Ensembl Acc Id: ENSRNOP00000084529   ⟸   ENSRNOT00000106066
Ensembl Acc Id: ENSRNOP00000097523   ⟸   ENSRNOT00000106704
Protein Domains
Tectonic

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698605
Promoter ID:EPDNEW_R9129
Type:multiple initiation site
Name:Tctn2_1
Description:tectonic family member 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9130  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01237,398,331 - 37,398,391EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621006 AgrOrtholog
BioCyc Gene G2FUF-19365 BioCyc
BioCyc Pathway PWY-7980 [ATP biosynthesis] BioCyc
BioCyc Pathway Image PWY-7980 BioCyc
Ensembl Genes ENSRNOG00000052704 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000083401.2 UniProtKB/TrEMBL
  ENSRNOT00000087698.2 UniProtKB/TrEMBL
  ENSRNOT00000108577.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7375616 IMAGE-MGC_LOAD
InterPro ATPase_V0/A0-cplx_116kDa_su UniProtKB/TrEMBL
  DUF1619 UniProtKB/TrEMBL
  V-type_ATPase_116kDa_su_euka UniProtKB/TrEMBL
KEGG Report rno:116455 UniProtKB/TrEMBL
MGC_CLONE MGC:112832 IMAGE-MGC_LOAD
NCBI Gene 116455 ENTREZGENE
PANTHER ATPase_V0/A0_116 UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE 116 KDA SUBUNIT A2 UniProtKB/TrEMBL
Pfam DUF1619 UniProtKB/TrEMBL
  V_ATPase_I UniProtKB/TrEMBL
PhenoGen Atp6v0a2 PhenoGen
PIRSF ATP6V0A1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000052704 RatGTEx
UniProt A0A0G2K5M9_RAT UniProtKB/TrEMBL
  F1LQ38 ENTREZGENE
  Q2I6B1 ENTREZGENE, UniProtKB/TrEMBL
  Q4G036_RAT UniProtKB/TrEMBL
  Q7TP16_RAT UniProtKB/TrEMBL
UniProt Secondary F1LQ38 UniProtKB/TrEMBL
  F1LR83 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Atp6v0a2  ATPase H+ transporting V0 subunit a2  Atp6v0a2  ATPase, H+ transporting, lysosomal V0 subunit A2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-22 Atp6v0a2  ATPase, H+ transporting, lysosomal V0 subunit A2  Atp6v0a2  ATPase, H+ transporting, lysosomal V0 subunit a isoform 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-29 Atp6v0a2  ATPase, H+ transporting, lysosomal V0 subunit a isoform 2  Atp6v0a2_predicted  ATPase, H+ transporting, lysosomal V0 subunit a isoform 2 (predicted)  Data merged from RGD:1310125 737654 APPROVED
2005-07-08 Atp6v0a2  ATPase, H+ transporting, lysosomal V0 subunit a isoform 2  Tj6  T-cell expressing clone j6  Symbol and Name updated 1299863 APPROVED
2005-01-12 Atp6v0a2_predicted  ATPase, H+ transporting, lysosomal V0 subunit a isoform 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED
2002-08-07 Tj6  T-cell expressing clone j6      Symbol and Name status set to provisional 70820 PROVISIONAL