Hip1r (huntingtin interacting protein 1 related) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Hip1r (huntingtin interacting protein 1 related) Rattus norvegicus
Analyze
Symbol: Hip1r
Name: huntingtin interacting protein 1 related
RGD ID: 621615
Description: Predicted to enable several functions, including clathrin binding activity; phosphatidylinositol phosphate binding activity; and protein dimerization activity. Involved in postsynapse organization. Located in membrane. Is active in glutamatergic synapse and postsynapse. Orthologous to human HIP1R (huntingtin interacting protein 1 related); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21232,590,164 - 32,618,841 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,590,165 - 32,618,734 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1233,768,901 - 33,797,424 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01234,380,245 - 34,408,769 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01233,432,136 - 33,460,662 (-)NCBIRnor_WKY
Rnor_6.01238,024,517 - 38,053,184 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1238,024,519 - 38,053,085 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01239,895,504 - 39,924,082 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,714,225 - 33,742,792 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11233,577,648 - 33,606,180 (-)NCBI
Celera1234,277,732 - 34,306,331 (-)NCBICelera
Cytogenetic Map12q15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (EXP)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
arsenous acid  (ISO)
atrazine  (EXP,ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (ISO)
cadmium sulfate  (ISO)
capsaicin  (EXP)
choline  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
cobalt dichloride  (ISO)
cyclosporin A  (EXP)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diazinon  (EXP)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
ethanol  (ISO)
fipronil  (EXP)
flavonoids  (EXP)
folic acid  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
trichloroethene  (EXP)
troglitazone  (ISO)
trovafloxacin  (ISO)
tungsten  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. Huntingtin-interacting protein-1-related protein of rat (rHIP1R) is localized in the postsynaptic regions. Okano A, etal., Brain Res 2003 Mar 28;967(1-2):210-25.
5. Huntingtin-Interacting Protein 1-Related Protein Plays a Critical Role in Dendritic Development and Excitatory Synapse Formation in Hippocampal Neurons. Peng L, etal., Front Mol Neurosci. 2017 Jun 15;10:186. doi: 10.3389/fnmol.2017.00186. eCollection 2017.
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10613908   PMID:11564758   PMID:11889126   PMID:12477932   PMID:14732715   PMID:14742709   PMID:15533940   PMID:16415883   PMID:17318189   PMID:18535670   PMID:18790740   PMID:19255499  


Genomics

Comparative Map Data
Hip1r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21232,590,164 - 32,618,841 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,590,165 - 32,618,734 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1233,768,901 - 33,797,424 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01234,380,245 - 34,408,769 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01233,432,136 - 33,460,662 (-)NCBIRnor_WKY
Rnor_6.01238,024,517 - 38,053,184 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1238,024,519 - 38,053,085 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01239,895,504 - 39,924,082 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,714,225 - 33,742,792 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11233,577,648 - 33,606,180 (-)NCBI
Celera1234,277,732 - 34,306,331 (-)NCBICelera
Cytogenetic Map12q15NCBI
HIP1R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812122,834,748 - 122,862,961 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl12122,834,453 - 122,862,961 (+)EnsemblGRCh38hg38GRCh38
GRCh3712123,319,295 - 123,347,508 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612121,885,992 - 121,913,460 (+)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map12q24.31NCBI
HuRef12120,292,995 - 120,307,523 (+)NCBIHuRef
CHM1_112123,288,408 - 123,315,480 (+)NCBICHM1_1
T2T-CHM13v2.012122,830,187 - 122,858,212 (+)NCBIT2T-CHM13v2.0
Hip1r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,111,665 - 124,141,278 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5124,111,691 - 124,143,621 (+)EnsemblGRCm39 Ensembl
GRCm385123,973,602 - 124,003,215 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5123,973,628 - 124,005,558 (+)EnsemblGRCm38mm10GRCm38
MGSCv375124,423,637 - 124,453,224 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365124,234,257 - 124,263,818 (+)NCBIMGSCv36mm8
Celera5121,036,606 - 121,075,804 (+)NCBICelera
Cytogenetic Map5FNCBI
Hip1r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554825,884,839 - 5,896,389 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554825,885,807 - 5,896,386 (-)NCBIChiLan1.0ChiLan1.0
HIP1R
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112124,672,109 - 124,700,726 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12124,685,091 - 124,700,726 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012120,438,841 - 120,467,489 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
HIP1R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1266,623,583 - 6,639,107 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl266,624,791 - 6,637,659 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,785,375 - 6,813,922 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0266,872,729 - 6,901,296 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl266,873,942 - 6,901,454 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,805,561 - 6,834,112 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0266,898,281 - 6,926,838 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0266,851,903 - 6,880,452 (-)NCBIUU_Cfam_GSD_1.0
Hip1r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118157,682,803 - 157,700,559 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365581,778,888 - 1,791,610 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365581,778,862 - 1,804,071 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HIP1R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1429,993,655 - 30,024,216 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11429,996,388 - 30,024,343 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21431,685,234 - 31,713,135 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HIP1R
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111118,173,302 - 118,202,840 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11118,173,544 - 118,202,985 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037127,111,575 - 127,140,009 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hip1r
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474722,876,276 - 22,896,584 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474722,876,183 - 22,897,557 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hip1r
114 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:175
Count of miRNA genes:123
Interacting mature miRNAs:144
Transcripts:ENSRNOT00000034264
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961088935682913Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121983578938193007Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122413920236638073Rat
1556747Calcic1Intracellular calcium level QTL 13.6platelet calcium amount (VT:0010500)platelet intracellular calcium level (CMO:0000922)122806443340130419Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)122806443345899022Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)122806443346669029Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)122806455740218380Rat
631829Alc6Alcohol consumption QTL 64.7consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)122860752637691617Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123210317445899022Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 24 16 19 60 33 28 11
Low 19 41 41 41 8 11 14 2 13 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000034264   ⟹   ENSRNOP00000029635
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,590,165 - 32,618,734 (-)Ensembl
Rnor_6.0 Ensembl1238,024,519 - 38,053,085 (-)Ensembl
RefSeq Acc Id: NM_001134763   ⟹   NP_001128235
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,590,164 - 32,618,734 (-)NCBI
Rnor_6.01238,024,518 - 38,053,085 (-)NCBI
Rnor_5.01239,895,504 - 39,924,082 (-)NCBI
RGSC_v3.41233,714,225 - 33,742,792 (-)RGD
Celera1234,277,732 - 34,306,331 (-)RGD
Sequence:
RefSeq Acc Id: NM_031234   ⟹   NP_112513
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,590,164 - 32,618,734 (-)NCBI
Rnor_6.01238,024,518 - 38,053,085 (-)NCBI
Rnor_5.01239,895,504 - 39,924,082 (-)NCBI
RGSC_v3.41233,714,225 - 33,742,792 (-)RGD
Celera1234,277,732 - 34,306,331 (-)RGD
Sequence:
RefSeq Acc Id: XM_008769266   ⟹   XP_008767488
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,590,164 - 32,618,841 (-)NCBI
Rnor_6.01238,024,517 - 38,053,184 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769267   ⟹   XP_008767489
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,590,164 - 32,618,841 (-)NCBI
Rnor_6.01238,024,517 - 38,053,184 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769268   ⟹   XP_008767490
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,590,164 - 32,608,940 (-)NCBI
Rnor_6.01238,024,517 - 38,044,771 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_112513   ⟸   NM_031234
- Peptide Label: isoform 2
- UniProtKB: B5DFK5 (UniProtKB/TrEMBL),   Q99PW9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001128235   ⟸   NM_001134763
- Peptide Label: isoform 1
- UniProtKB: B5DFK5 (UniProtKB/TrEMBL),   F1LML7 (UniProtKB/TrEMBL),   Q99PW9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767489   ⟸   XM_008769267
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008767488   ⟸   XM_008769266
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008767490   ⟸   XM_008769268
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000029635   ⟸   ENSRNOT00000034264
Protein Domains
ENTH   I/LWEQ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LML7-F1-model_v2 AlphaFold F1LML7 1-1069 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698620
Promoter ID:EPDNEW_R9145
Type:initiation region
Name:Hip1r_1
Description:huntingtin interacting protein 1 related
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01238,053,088 - 38,053,148EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621615 AgrOrtholog
BioCyc Gene G2FUF-19332 BioCyc
Ensembl Genes ENSRNOG00000001091 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000029635 ENTREZGENE
  ENSRNOP00000029635.4 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000034264 ENTREZGENE
  ENSRNOT00000034264.5 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.90 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7456661 IMAGE-MGC_LOAD
InterPro ANTH UniProtKB/TrEMBL
  ENTH_VHS UniProtKB/TrEMBL
  Epsin-like_N UniProtKB/TrEMBL
  HIP1_clath-bd UniProtKB/TrEMBL
  HIP1R UniProtKB/TrEMBL
  I/LWEQ_dom_sf UniProtKB/TrEMBL
  ILWEQ UniProtKB/TrEMBL
  Sla2_fam UniProtKB/TrEMBL
KEGG Report rno:81917 UniProtKB/TrEMBL
MGC_CLONE MGC:116284 IMAGE-MGC_LOAD
NCBI Gene 81917 ENTREZGENE
PANTHER PTHR10407 UniProtKB/TrEMBL
  PTHR10407:SF10 UniProtKB/TrEMBL
Pfam ANTH UniProtKB/TrEMBL
  HIP1_clath_bdg UniProtKB/TrEMBL
  I_LWEQ UniProtKB/TrEMBL
PhenoGen Hip1r PhenoGen
PROSITE ENTH UniProtKB/TrEMBL
  I_LWEQ UniProtKB/TrEMBL
SMART ENTH UniProtKB/TrEMBL
  ILWEQ UniProtKB/TrEMBL
Superfamily-SCOP ENTH_VHS UniProtKB/TrEMBL
  SSF109885 UniProtKB/TrEMBL
UniProt B5DFK5 ENTREZGENE, UniProtKB/TrEMBL
  F1LML7 ENTREZGENE, UniProtKB/TrEMBL
  Q99PW9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Hip1r  huntingtin interacting protein 1 related      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Hip1r  huntingtin interacting protein 1 related      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization localized to small vesicular structures in post-synaptic spines 708599