Auts2 (activator of transcription and developmental regulator AUTS2) - Rat Genome Database

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Gene: Auts2 (activator of transcription and developmental regulator AUTS2) Rattus norvegicus
Analyze
Symbol: Auts2
Name: activator of transcription and developmental regulator AUTS2
RGD ID: 2323959
Description: Predicted to enable chromatin binding activity. Predicted to be involved in several processes, including generation of neurons; positive regulation of Rac protein signal transduction; and positive regulation of lamellipodium assembly. Predicted to act upstream of or within several processes, including innate vocalization behavior; positive regulation of histone modification; and righting reflex. Predicted to be located in growth cone and nucleus. Predicted to colocalize with actin cytoskeleton. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 26. Orthologous to human AUTS2 (activator of transcription and developmental regulator AUTS2); INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
Also known as: autism susceptibility candidate 2; autism susceptibility candidate 2-like; AUTS2, activator of transcription and developmental regulator; LOC100362819
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01227,155,362 - 28,252,752 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1228,212,333 - 28,251,816 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01229,128,927 - 30,213,265 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41226,069,494 - 26,166,764 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1225,842,313 - 26,925,231 (+)NCBICelera
Cytogenetic Map12q12NCBI


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:19948250   PMID:21873635   PMID:25519132   PMID:25533347  


Genomics

Comparative Map Data
Auts2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01227,155,362 - 28,252,752 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1228,212,333 - 28,251,816 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01229,128,927 - 30,213,265 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41226,069,494 - 26,166,764 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1225,842,313 - 26,925,231 (+)NCBICelera
Cytogenetic Map12q12NCBI
AUTS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl769,598,296 - 70,793,506 (+)EnsemblGRCh38hg38GRCh38
GRCh38769,598,475 - 70,793,506 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37769,063,461 - 70,258,492 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36768,702,255 - 69,895,790 (+)NCBINCBI36hg18NCBI36
Build 34768,508,969 - 69,702,505NCBI
Celera762,444,993 - 63,639,505 (+)NCBI
Cytogenetic Map7q11.22NCBI
HuRef765,242,247 - 66,436,087 (+)NCBIHuRef
CHM1_1769,159,054 - 70,352,884 (+)NCBICHM1_1
CRA_TCAGchr7v2768,403,004 - 69,597,617 (+)NCBI
Auts2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395131,466,171 - 132,572,059 (-)NCBIGRCm39mm39
GRCm39 Ensembl5131,466,171 - 132,572,183 (-)Ensembl
GRCm385131,437,333 - 132,543,220 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5131,437,333 - 132,543,344 (-)EnsemblGRCm38mm10GRCm38
MGSCv375131,913,552 - 133,018,213 (-)NCBIGRCm37mm9NCBIm37
MGSCv365132,053,114 - 132,827,107 (-)NCBImm8
Celera5128,451,472 - 129,550,457 (-)NCBICelera
Cytogenetic Map5G2NCBI
Auts2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545610,296,377 - 10,322,455 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545610,294,525 - 11,417,761 (-)NCBIChiLan1.0ChiLan1.0
AUTS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1777,496,741 - 78,686,763 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl777,495,909 - 78,686,763 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0764,822,964 - 66,015,831 (+)NCBIMhudiblu_PPA_v0panPan3
AUTS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.162,747,288 - 3,875,774 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl62,748,598 - 3,875,611 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha64,445,234 - 5,579,702 (-)NCBI
ROS_Cfam_1.062,564,894 - 3,693,933 (-)NCBI
UMICH_Zoey_3.162,486,676 - 3,624,247 (-)NCBI
UNSW_CanFamBas_1.062,499,011 - 3,626,892 (-)NCBI
UU_Cfam_GSD_1.062,667,270 - 3,795,594 (-)NCBI
Auts2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344127,849,011 - 128,840,909 (-)NCBI
SpeTri2.0NW_0049365435,146,961 - 6,187,634 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AUTS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl313,565,480 - 14,794,365 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1313,565,439 - 14,794,365 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2313,957,636 - 14,944,320 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AUTS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1284,565,958 - 5,759,088 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl284,567,622 - 4,595,056 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607010,993,492 - 12,006,970 (+)NCBIVero_WHO_p1.0
Auts2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474010,339,411 - 11,463,292 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D12Mgh3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,234,777 - 24,234,895 (+)MAPPERmRatBN7.2
Rnor_6.01227,285,473 - 27,285,590NCBIRnor6.0
Rnor_5.01229,257,552 - 29,257,669UniSTSRnor5.0
RGSC_v3.41225,271,824 - 25,271,941UniSTSRGSC3.4
RGSC_v3.41225,271,823 - 25,271,941RGDRGSC3.4
RGSC_v3.11225,134,969 - 25,135,323RGD
Celera1225,971,194 - 25,971,311UniSTS
RH 3.4 Map12405.5UniSTS
RH 3.4 Map12405.5RGD
RH 2.0 Map12285.3RGD
Cytogenetic Map12q12UniSTS
D12Rat12  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01227,911,196 - 27,911,339NCBIRnor6.0
RGSC_v3.41225,802,539 - 25,802,828RGDRGSC3.4
RGSC_v3.41225,802,584 - 25,802,727UniSTSRGSC3.4
RGSC_v3.11225,665,800 - 25,665,943RGD
Celera1226,588,247 - 26,588,390UniSTS
RH 3.4 Map12424.3UniSTS
RH 3.4 Map12424.3RGD
RH 2.0 Map12297.9RGD
SHRSP x BN Map1227.31RGD
FHH x ACI Map1212.29RGD
Cytogenetic Map12q12UniSTS
D12Rat23  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,139,057 - 24,139,202 (+)MAPPERmRatBN7.2
Rnor_6.01227,190,096 - 27,190,240NCBIRnor6.0
Rnor_5.01229,163,046 - 29,163,190UniSTSRnor5.0
RGSC_v3.41225,367,106 - 25,367,251RGDRGSC3.4
RGSC_v3.41225,367,107 - 25,367,251UniSTSRGSC3.4
RGSC_v3.11225,230,197 - 25,230,561RGD
Celera1225,875,595 - 25,875,739UniSTS
SHRSP x BN Map1227.31UniSTS
SHRSP x BN Map1227.31RGD
FHH x ACI Map1211.22RGD
Cytogenetic Map12q12UniSTS
D12Rat11  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,956,669 - 24,956,834 (+)MAPPERmRatBN7.2
Rnor_6.01228,014,147 - 28,014,311NCBIRnor6.0
Rnor_5.01229,979,515 - 29,979,679UniSTSRnor5.0
RGSC_v3.41225,905,756 - 25,905,921RGDRGSC3.4
RGSC_v3.41225,905,757 - 25,905,921UniSTSRGSC3.4
RGSC_v3.11225,768,972 - 25,769,137RGD
Celera1226,689,778 - 26,689,938UniSTS
SHRSP x BN Map1227.24UniSTS
SHRSP x BN Map1227.24RGD
Cytogenetic Map12q12UniSTS
D12Rat13  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,825,686 - 24,825,856 (+)MAPPERmRatBN7.2
Rnor_6.01227,882,828 - 27,882,997NCBIRnor6.0
Rnor_5.01229,849,769 - 29,849,938UniSTSRnor5.0
RGSC_v3.41225,773,602 - 25,774,160RGDRGSC3.4
RGSC_v3.41225,773,966 - 25,774,135UniSTSRGSC3.4
RGSC_v3.11225,637,182 - 25,637,351RGD
Celera1226,559,619 - 26,559,788UniSTS
RH 3.4 Map12433.8RGD
RH 3.4 Map12433.8UniSTS
SHRSP x BN Map1227.31UniSTS
SHRSP x BN Map1227.31RGD
FHH x ACI Map1212.29RGD
Cytogenetic Map12q12UniSTS
D12Rat27  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,812,101 - 24,812,308 (+)MAPPERmRatBN7.2
Rnor_6.01227,869,409 - 27,869,615NCBIRnor6.0
Rnor_5.01229,836,557 - 29,836,763UniSTSRnor5.0
RGSC_v3.41225,760,364 - 25,760,571RGDRGSC3.4
RGSC_v3.41225,760,365 - 25,760,571UniSTSRGSC3.4
RGSC_v3.11225,623,581 - 25,623,787RGD
Celera1226,546,235 - 26,546,444UniSTS
RH 3.4 Map12426.4RGD
RH 3.4 Map12426.4UniSTS
SHRSP x BN Map1227.24UniSTS
SHRSP x BN Map1227.24RGD
FHH x ACI Map1212.29RGD
Cytogenetic Map12q12UniSTS
D12Rat45  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,157,460 - 25,157,706 (+)MAPPERmRatBN7.2
Rnor_6.01228,217,098 - 28,217,343NCBIRnor6.0
Rnor_5.01230,177,794 - 30,178,039UniSTSRnor5.0
RGSC_v3.41226,132,118 - 26,132,364RGDRGSC3.4
RGSC_v3.41226,132,119 - 26,132,364UniSTSRGSC3.4
RGSC_v3.11225,995,334 - 25,995,580RGD
Celera1226,887,907 - 26,888,152UniSTS
SHRSP x BN Map1227.31UniSTS
SHRSP x BN Map1227.31RGD
FHH x ACI Map1213.34RGD
Cytogenetic Map12q12UniSTS
D12Rat82  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01229,978,539 - 29,978,675UniSTSRnor5.0
RGSC_v3.41225,904,400 - 25,904,537RGDRGSC3.4
RGSC_v3.41225,904,401 - 25,904,537UniSTSRGSC3.4
RGSC_v3.11225,767,422 - 25,767,820RGD
FHH x ACI Map1212.29UniSTS
FHH x ACI Map1212.29RGD
D12Rat74  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,925,088 - 24,925,229 (+)MAPPERmRatBN7.2
Rnor_6.01227,982,030 - 27,982,170NCBIRnor6.0
Rnor_5.01229,947,974 - 29,948,114UniSTSRnor5.0
RGSC_v3.41225,873,969 - 25,874,110RGDRGSC3.4
RGSC_v3.41225,873,970 - 25,874,110UniSTSRGSC3.4
RGSC_v3.11225,737,005 - 25,737,364RGD
Celera1226,658,941 - 26,659,081UniSTS
SHRSP x BN Map1227.31UniSTS
SHRSP x BN Map1227.31RGD
Cytogenetic Map12q12UniSTS
D12Got57  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,605,757 - 24,605,919 (+)MAPPERmRatBN7.2
Rnor_6.01227,658,780 - 27,658,941NCBIRnor6.0
Rnor_5.01229,628,532 - 29,628,693UniSTSRnor5.0
RGSC_v3.41225,549,856 - 25,550,018RGDRGSC3.4
RGSC_v3.41225,549,857 - 25,550,018UniSTSRGSC3.4
RGSC_v3.11225,413,073 - 25,413,234RGD
Celera1226,339,952 - 26,340,103UniSTS
RH 3.4 Map12407.7UniSTS
RH 3.4 Map12407.7RGD
RH 2.0 Map12317.9RGD
Cytogenetic Map12q12UniSTS
D12Got211  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,792,400 - 24,792,525 (+)MAPPERmRatBN7.2
Rnor_6.01227,850,096 - 27,850,220NCBIRnor6.0
Rnor_5.01229,817,244 - 29,817,368UniSTSRnor5.0
RGSC_v3.41225,740,663 - 25,740,787UniSTSRGSC3.4
Celera1226,526,601 - 26,526,725UniSTS
Cytogenetic Map12 RGD
D12Uwm1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1226,207,355 - 26,207,550UniSTS
Cytogenetic Map12q12UniSTS
D12Got212  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,000,469 - 25,000,690 (+)MAPPERmRatBN7.2
Rnor_6.01228,059,696 - 28,059,916NCBIRnor6.0
Rnor_5.01230,024,738 - 30,024,958UniSTSRnor5.0
RGSC_v3.41225,950,341 - 25,950,561UniSTSRGSC3.4
Celera1226,733,440 - 26,733,660UniSTS
Cytogenetic Map12 RGD
D5Mit324  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.41225,399,377 - 25,399,502UniSTSRGSC3.4
Cytogenetic Map12q12UniSTS
RH143368  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,095,095 - 25,095,254 (+)MAPPERmRatBN7.2
Rnor_6.01228,155,432 - 28,155,590NCBIRnor6.0
Rnor_5.01230,116,628 - 30,116,786UniSTSRnor5.0
RGSC_v3.41226,069,730 - 26,069,888UniSTSRGSC3.4
Celera1226,826,580 - 26,826,738UniSTS
RH 3.4 Map12422.9UniSTS
Cytogenetic Map12q12UniSTS
BF386703  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1226,190,187 - 26,190,346UniSTS
RH 3.4 Map12403.91UniSTS
Cytogenetic Map12q12UniSTS
BE115872  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,189,310 - 25,189,461 (+)MAPPERmRatBN7.2
Rnor_6.01228,249,203 - 28,249,353NCBIRnor6.0
Rnor_5.01230,209,899 - 30,210,049UniSTSRnor5.0
RGSC_v3.41226,163,968 - 26,164,118UniSTSRGSC3.4
Celera1226,919,738 - 26,919,888UniSTS
RH 3.4 Map12269.61UniSTS
Cytogenetic Map12q12UniSTS
RH140659  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,997,621 - 24,997,806 (+)MAPPERmRatBN7.2
Rnor_6.01228,056,844 - 28,057,028NCBIRnor6.0
Rnor_5.01230,022,212 - 30,022,396UniSTSRnor5.0
RGSC_v3.41225,947,307 - 25,947,491UniSTSRGSC3.4
Celera1226,730,593 - 26,730,777UniSTS
RH 3.4 Map12424.4UniSTS
Cytogenetic Map12q12UniSTS
RH141576  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,775,796 - 24,776,012 (+)MAPPERmRatBN7.2
Rnor_6.01227,833,516 - 27,833,731NCBIRnor6.0
Rnor_5.01229,801,060 - 29,801,275UniSTSRnor5.0
RGSC_v3.41225,724,057 - 25,724,272UniSTSRGSC3.4
Celera1226,509,807 - 26,510,022UniSTS
RH 3.4 Map12402.41UniSTS
Cytogenetic Map12q12UniSTS
R75209  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,191,760 - 25,191,929 (+)MAPPERmRatBN7.2
Rnor_6.01228,251,653 - 28,251,821NCBIRnor6.0
Rnor_5.01230,212,349 - 30,212,517UniSTSRnor5.0
RGSC_v3.41226,166,418 - 26,166,586UniSTSRGSC3.4
Celera1226,922,188 - 26,922,356UniSTS
Cytogenetic Map12q12UniSTS
RH142495  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,875,269 - 24,875,371 (+)MAPPERmRatBN7.2
Rnor_6.01227,932,115 - 27,932,216NCBIRnor6.0
Rnor_5.01229,898,018 - 29,898,119UniSTSRnor5.0
RGSC_v3.41225,823,450 - 25,823,551UniSTSRGSC3.4
Celera1226,609,145 - 26,609,246UniSTS
RH 3.4 Map12425.2UniSTS
Cytogenetic Map12q12UniSTS
RH142855  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,949,867 - 24,949,995 (+)MAPPERmRatBN7.2
Rnor_6.01228,007,381 - 28,007,508NCBIRnor6.0
Rnor_5.01229,973,325 - 29,973,452UniSTSRnor5.0
RGSC_v3.41225,898,795 - 25,898,922UniSTSRGSC3.4
Celera1226,683,414 - 26,683,541UniSTS
RH 3.4 Map12424.4UniSTS
Cytogenetic Map12q12UniSTS
RH143225  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,364,165 - 24,364,299 (+)MAPPERmRatBN7.2
Rnor_6.01227,414,013 - 27,414,146NCBIRnor6.0
Rnor_5.01229,386,758 - 29,386,891UniSTSRnor5.0
RGSC_v3.41225,142,798 - 25,142,931UniSTSRGSC3.4
Celera1226,100,088 - 26,100,221UniSTS
RH 3.4 Map12403.91UniSTS
Cytogenetic Map12q12UniSTS
RH144305  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,290,586 - 24,290,688 (+)MAPPERmRatBN7.2
Rnor_6.01227,341,278 - 27,341,379NCBIRnor6.0
Rnor_5.01229,313,357 - 29,313,458UniSTSRnor5.0
RGSC_v3.41225,216,174 - 25,216,275UniSTSRGSC3.4
Celera1226,026,999 - 26,027,100UniSTS
RH 3.4 Map12403.21UniSTS
Cytogenetic Map12q12UniSTS
BF386235  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,637,499 - 24,637,718 (+)MAPPERmRatBN7.2
Rnor_6.01227,691,531 - 27,691,749NCBIRnor6.0
Rnor_5.01229,660,839 - 29,661,057UniSTSRnor5.0
RGSC_v3.41225,582,998 - 25,583,216UniSTSRGSC3.4
Celera1226,371,755 - 26,371,973UniSTS
RH 3.4 Map12405.9UniSTS
Cytogenetic Map12q12UniSTS
BE102361  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,651,700 - 24,651,850 (+)MAPPERmRatBN7.2
Rnor_6.01227,705,709 - 27,705,858NCBIRnor6.0
Rnor_5.01229,675,017 - 29,675,166UniSTSRnor5.0
RGSC_v3.41225,597,196 - 25,597,345UniSTSRGSC3.4
Celera1226,385,951 - 26,386,100UniSTS
RH 3.4 Map12404.01UniSTS
Cytogenetic Map12q12UniSTS
BF387056  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,828,035 - 24,828,205 (+)MAPPERmRatBN7.2
Rnor_6.01227,885,177 - 27,885,346NCBIRnor6.0
Rnor_5.01229,852,118 - 29,852,287UniSTSRnor5.0
RGSC_v3.41225,776,315 - 25,776,484UniSTSRGSC3.4
Celera1226,561,936 - 26,562,105UniSTS
RH 3.4 Map12422.8UniSTS
Cytogenetic Map12q12UniSTS
BE110558  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,183,753 - 25,183,933 (+)MAPPERmRatBN7.2
Rnor_6.01228,243,648 - 28,243,827NCBIRnor6.0
Rnor_5.01230,204,344 - 30,204,523UniSTSRnor5.0
RGSC_v3.41226,158,413 - 26,158,592UniSTSRGSC3.4
Celera1226,914,197 - 26,914,376UniSTS
RH 3.4 Map12434.4UniSTS
Cytogenetic Map12q12UniSTS
BE120626  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,132,054 - 25,132,212 (+)MAPPERmRatBN7.2
Rnor_6.01228,192,040 - 28,192,196NCBIRnor6.0
Rnor_5.01230,153,099 - 30,153,255UniSTSRnor5.0
RGSC_v3.41226,107,125 - 26,107,281UniSTSRGSC3.4
Celera1226,863,094 - 26,863,250UniSTS
RH 3.4 Map12434.9UniSTS
Cytogenetic Map12q12UniSTS
BE108318  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,953,472 - 24,953,663 (+)MAPPERmRatBN7.2
Rnor_6.01228,011,025 - 28,011,215NCBIRnor6.0
Rnor_5.01229,976,616 - 29,976,806UniSTSRnor5.0
RGSC_v3.41225,902,478 - 25,902,668UniSTSRGSC3.4
Celera1226,686,825 - 26,687,015UniSTS
RH 3.4 Map12423.9UniSTS
Cytogenetic Map12q12UniSTS
BE108855  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,181,300 - 24,181,463 (+)MAPPERmRatBN7.2
Rnor_6.01227,232,328 - 27,232,490NCBIRnor6.0
Rnor_5.01229,204,803 - 29,204,965UniSTSRnor5.0
RGSC_v3.41225,325,108 - 25,325,270UniSTSRGSC3.4
Celera1225,917,724 - 25,917,886UniSTS
RH 3.4 Map12423.5UniSTS
Cytogenetic Map12q12UniSTS
BF412251  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,785,161 - 24,785,277 (+)MAPPERmRatBN7.2
Rnor_6.01227,842,893 - 27,843,008NCBIRnor6.0
Rnor_5.01229,810,209 - 29,810,324UniSTSRnor5.0
RGSC_v3.41225,733,368 - 25,733,483UniSTSRGSC3.4
Celera1226,519,166 - 26,519,281UniSTS
RH 3.4 Map12404.0UniSTS
Cytogenetic Map12q12UniSTS
AU047595  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,122,409 - 25,122,520 (+)MAPPERmRatBN7.2
Rnor_6.01228,182,398 - 28,182,508NCBIRnor6.0
Rnor_5.01230,143,457 - 30,143,567UniSTSRnor5.0
RGSC_v3.41226,097,483 - 26,097,593UniSTSRGSC3.4
Celera1226,853,452 - 26,853,562UniSTS
RH140050  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,128,479 - 24,128,664 (+)MAPPERmRatBN7.2
Rnor_6.01227,179,526 - 27,179,710NCBIRnor6.0
Rnor_5.01229,153,308 - 29,153,492UniSTSRnor5.0
RGSC_v3.41225,377,728 - 25,377,912UniSTSRGSC3.4
Celera1225,865,220 - 25,865,404UniSTS
RH 3.4 Map12403.01UniSTS
Cytogenetic Map12q12UniSTS
RH141345  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,096,808 - 25,097,014 (+)MAPPERmRatBN7.2
Rnor_6.01228,157,153 - 28,157,358NCBIRnor6.0
Rnor_5.01230,118,288 - 30,118,493UniSTSRnor5.0
RGSC_v3.41226,071,846 - 26,072,051UniSTSRGSC3.4
Celera1226,828,197 - 26,828,402UniSTS
RH 3.4 Map12408.2UniSTS
Cytogenetic Map12q12UniSTS
BM387176  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1225,893,592 - 25,893,773UniSTS
RH 3.4 Map5807.6UniSTS
Cytogenetic Map12q12UniSTS
BE114476  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,056,170 - 25,056,327 (+)MAPPERmRatBN7.2
Rnor_6.01228,116,443 - 28,116,599NCBIRnor6.0
Rnor_5.01230,077,918 - 30,078,074UniSTSRnor5.0
RGSC_v3.41226,007,268 - 26,007,424UniSTSRGSC3.4
Celera1226,789,070 - 26,789,226UniSTS
RH 3.4 Map12424.3UniSTS
Cytogenetic Map12q12UniSTS
AU048982  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,605,778 - 24,605,915 (+)MAPPERmRatBN7.2
Rnor_6.01227,658,801 - 27,658,937NCBIRnor6.0
Rnor_5.01229,628,553 - 29,628,689UniSTSRnor5.0
RGSC_v3.41225,549,878 - 25,550,014UniSTSRGSC3.4
Celera1226,339,973 - 26,340,099UniSTS
ha2178  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,388,160 - 24,389,026 (+)MAPPERmRatBN7.2
Rnor_6.01227,439,374 - 27,440,239NCBIRnor6.0
Rnor_5.01229,410,128 - 29,410,993UniSTSRnor5.0
Celera1226,124,084 - 26,124,949UniSTS
Cytogenetic Map12q12UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:37
Count of miRNA genes:36
Interacting mature miRNAs:37
Transcripts:ENSRNOT00000001182
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 17 2 2 2 66 14 25
Low 3 26 19 10 5 10 5 8 8 9 15 11 5
Below cutoff 34 27 13 27 2 2 12 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000001182   ⟹   ENSRNOP00000001182
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1225,099,800 - 25,192,866 (+)Ensembl
Rnor_6.0 Ensembl1228,212,333 - 28,251,816 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000044800   ⟹   ENSRNOP00000051554
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1224,576,354 - 24,594,037 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099151   ⟹   ENSRNOP00000091286
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1224,453,473 - 25,192,866 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099826   ⟹   ENSRNOP00000094782
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1225,187,451 - 25,194,416 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118614   ⟹   ENSRNOP00000076894
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1224,104,192 - 25,192,866 (+)Ensembl
RefSeq Acc Id: XM_008769171   ⟹   XP_008767393
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01227,155,362 - 28,252,752 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769172   ⟹   XP_008767394
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01227,155,362 - 28,252,752 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769173   ⟹   XP_008767395
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01227,155,362 - 28,252,752 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769174   ⟹   XP_008767396
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01227,155,362 - 28,252,752 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769175   ⟹   XP_008767397
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01227,155,362 - 28,252,752 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598627   ⟹   XP_017454116
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01227,155,362 - 28,252,752 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017604555   ⟹   XP_017460044
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1225,842,313 - 26,925,231 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017604556   ⟹   XP_017460045
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1225,842,313 - 26,925,231 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017604557   ⟹   XP_017460046
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1225,842,313 - 26,925,231 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017604558   ⟹   XP_017460047
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1225,842,313 - 26,925,231 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017604559   ⟹   XP_017460048
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1225,842,313 - 26,925,231 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2323959 AgrOrtholog
Ensembl Genes ENSRNOG00000000885 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000001182 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001182 UniProtKB/TrEMBL
InterPro AUTS2 UniProtKB/TrEMBL
NCBI Gene 100362819 ENTREZGENE
PANTHER PTHR14429 UniProtKB/TrEMBL
Pfam Auts2 UniProtKB/TrEMBL
PhenoGen Auts2 PhenoGen
PRINTS FIBROSIN1LPF UniProtKB/TrEMBL
UniProt F1M388_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-03-26 Auts2  activator of transcription and developmental regulator AUTS2  Auts2  AUTS2, activator of transcription and developmental regulator  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2017-02-01 Auts2  AUTS2, activator of transcription and developmental regulator  Auts2  autism susceptibility candidate 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-09-16 Auts2  autism susceptibility candidate 2  LOC100362819  autism susceptibility candidate 2-like  Name and Symbol changed 629549 APPROVED
2010-05-06 LOC100362819  autism susceptibility candidate 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL