Alkbh4 (alkB homolog 4, lysine demethylase)

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Gene: Alkbh4 (alkB homolog 4, lysine demethylase) Rattus norvegicus

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Symbol:

Alkbh4

Name:

alkB homolog 4, lysine demethylase

RGD ID:

1308608

Description:

Predicted to enable actin binding activity and broad specificity oxidative DNA demethylase activity. Predicted to be involved in actomyosin structure organization; cleavage furrow ingression; and positive regulation of gene expression, epigenetic. Predicted to be active in contractile ring and midbody. Orthologous to human ALKBH4 (alkB homolog 4, lysine demethylase); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; amitrole.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

alkB homolog 4, lysine demthylase; alkB, alkylation repair homolog 4; alkB, alkylation repair homolog 4 (E. coli); alkylated DNA repair protein alkB homolog 4; alpha-ketoglutarate-dependent dioxygenase alkB homolog 4; LOC288587; RGD1308608; similar to hypothetical protein FLJ20013

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	26,160,643 - 26,166,560 (-)	NCBI		GRCr8
mRatBN7.2	12	20,524,030 - 20,529,947 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	20,524,030 - 20,529,947 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	21,664,007 - 21,669,932 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	22,276,711 - 22,282,636 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	21,341,901 - 21,347,814 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	23,568,204 - 23,574,133 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	23,568,094 - 23,574,125 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	25,568,554 - 25,574,483 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	21,639,400 - 21,645,317 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	21,630,562 - 21,635,583 (-)	NCBI
Celera	12	22,292,412 - 22,298,329 (-)	NCBI		Celera
Cytogenetic Map	12	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

pleomorphic xanthoastrocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-dinitrotoluene (EXP)

amitrole (EXP)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

decabromodiphenyl ether (EXP)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

doxorubicin (ISO)

endosulfan (EXP)

fulvestrant (ISO)

gentamycin (EXP)

perfluorooctane-1-sulfonic acid (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

Soman (EXP)

sulfadimethoxine (EXP)

sunitinib (ISO)

testosterone enanthate (ISO)

thioacetamide (EXP)

thiram (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

trovafloxacin (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actomyosin structure organization (IBA,ISO)

cleavage furrow ingression (ISO)

demethylation (IEA)

positive regulation of gene expression, epigenetic (ISO)

Cellular Component

contractile ring (IBA,ISO)

midbody (IBA,ISO)

Molecular Function

2-oxoglutarate-dependent dioxygenase activity (IBA,ISO)

actin binding (ISO)

broad specificity oxidative DNA demethylase activity (ISO)

demethylase activity (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:16174769	PMID:21166655	PMID:23673617	PMID:30982744

Genomics

Comparative Map Data

Alkbh4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	26,160,643 - 26,166,560 (-)	NCBI		GRCr8
mRatBN7.2	12	20,524,030 - 20,529,947 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	20,524,030 - 20,529,947 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	21,664,007 - 21,669,932 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	22,276,711 - 22,282,636 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	21,341,901 - 21,347,814 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	23,568,204 - 23,574,133 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	23,568,094 - 23,574,125 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	25,568,554 - 25,574,483 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	21,639,400 - 21,645,317 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	21,630,562 - 21,635,583 (-)	NCBI
Celera	12	22,292,412 - 22,298,329 (-)	NCBI		Celera
Cytogenetic Map	12	q12	NCBI

ALKBH4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	102,456,238 - 102,464,863 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	102,456,238 - 102,464,863 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	102,096,685 - 102,105,310 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	101,883,690 - 101,892,293 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	97,108,971 - 97,117,656 (-)	NCBI		Celera
Cytogenetic Map	7	q22.1	NCBI
HuRef	7	96,686,935 - 96,695,574 (-)	NCBI		HuRef
CHM1_1	7	102,026,702 - 102,035,362 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	103,773,867 - 103,782,492 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	101,456,968 - 101,465,622 (-)	NCBI

Alkbh4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	136,164,999 - 136,170,654 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	136,165,000 - 136,170,469 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	136,136,145 - 136,141,800 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	136,136,146 - 136,141,615 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	136,614,651 - 136,617,485 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	136,420,772 - 136,426,430 (+)	NCBI		MGSCv36	mm8
Celera	5	133,159,129 - 133,161,963 (+)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	75.82	NCBI

Alkbh4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955456	15,158,363 - 15,167,318 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955456	15,158,380 - 15,167,318 (+)	NCBI	ChiLan1.0	ChiLan1.0

ALKBH4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	120,470,675 - 120,478,721 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	168,727,367 - 168,743,349 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	94,596,641 - 94,605,369 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

ALKBH4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	7,717,240 - 7,723,364 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	7,717,282 - 7,723,048 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	9,412,262 - 9,418,383 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	7,537,419 - 7,543,537 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	7,537,458 - 7,543,534 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	7,505,923 - 7,512,043 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	7,468,991 - 7,475,108 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	7,632,708 - 7,638,829 (+)	NCBI		UU_Cfam_GSD_1.0

Alkbh4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	132,147,508 - 132,153,154 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936543	1,883,321 - 1,889,155 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936543	1,883,353 - 1,889,159 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ALKBH4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	9,798,641 - 9,806,215 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	9,795,993 - 9,806,230 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	9,705,924 - 9,713,496 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ALKBH4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	10,756,249 - 10,765,912 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	10,756,377 - 10,765,026 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666070	5,642,103 - 5,652,106 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Alkbh4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	15,181,370 - 15,188,230 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	15,181,241 - 15,188,230 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Alkbh4
31 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	136
Count of miRNA genes:	94
Interacting mature miRNAs:	111
Transcripts:	ENSRNOT00000001939
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	19144362	46669029	Rat
61443	Btemp2	Thermal response to stress QTL 2	3.3	0.000094	body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	12	15025183	20794014	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
61324	Eae5	Experimental allergic encephalomyelitis QTL 5	14		nervous system integrity trait (VT:0010566)	percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)	12	19610870	46669029	Rat
9590147	Scort7	Serum corticosterone level QTL 7	13.61	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	12	1	42110980	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	9603277	46669029	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	8525423	28064601	Rat
737822	Alc10	Alcohol consumption QTL 10	2.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	12	19610870	40218516	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	15872653	32974238	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	23297788	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	7196730	46669029	Rat
1598855	Bp294	Blood pressure QTL 294	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	1	34851688	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	45055165	Rat
10755457	Coatc14	Coat color QTL 14		0.01759	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	12	1	22591684	Rat
8694179	Bw150	Body weight QTL 150	2.9	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
7411545	Bw128	Body weight QTL 128	5.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	5564495	46669029	Rat
1300157	Rf21	Renal function QTL 21	4.4		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	12	9318216	32103380	Rat
737979	Pia22	Pristane induced arthritis QTL 22	53.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	1	44465750	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	19610889	35682913	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	10474137	46669029	Rat
7411660	Foco28	Food consumption QTL 28	10.9	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
1331755	Bp219	Blood pressure QTL 219	3.041		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	28064557	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	19835789	38193007	Rat
2306789	Ean6	Experimental allergic neuritis QTL 6	4.9		nervous system integrity trait (VT:0010566)	experimental autoimmune neuritis severity score (CMO:0001528)	12	19610870	24139202	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	20328819	46669029	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	19610870	42828880	Rat
2302060	Pia37	Pristane induced arthritis QTL 37	6.1	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	13198157	46669029	Rat
1549912	Bp268	Blood pressure QTL 268			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	13182736	46669029	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	12812385	46669029	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564498	46669029	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	6107579	46669029	Rat
1581516	Cm56	Cardiac mass QTL 56	4.2	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	1	29333307	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
9590086	Insglur6	Insulin/glucose ratio QTL 6	18.97	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	12	1	42110980	Rat
1549902	Bp269	Blood pressure QTL 269			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	13182736	46669029	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	12351619	46669029	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	11073825	24234895	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	10474137	46669029	Rat
634351	Apr5	Acute phase response QTL 5	6.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	12	1	44503507	Rat
634350	Apr4	Acute phase response QTL 4	6		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	1172005	46172005	Rat
631521	Pia12	Pristane induced arthritis QTL 12	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	20259417	23672083	Rat
61416	Pia4	Pristane induced arthritis QTL 4	8.4		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	12	13635523	30827399	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	36247923	Rat
61421	Cia12	Collagen induced arthritis QTL 12	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	13635523	35682913	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	12812385	46669029	Rat
7411586	Foco5	Food consumption QTL 5	5.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	1	42450532	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
2302042	Pia38	Pristane induced arthritis QTL 38	3.5	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	1	44503507	Rat
7411595	Foco9	Food consumption QTL 9	4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	8449490	28302290	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
631543	Bp83	Blood pressure QTL 83	5.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	15550826	38478808	Rat

Markers in Region

RH142057

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	20,524,219 - 20,524,411 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	23,568,394 - 23,568,585	NCBI	Rnor6.0
Rnor_5.0	12	25,568,744 - 25,568,935	UniSTS	Rnor5.0
RGSC_v3.4	12	21,639,590 - 21,639,781	UniSTS	RGSC3.4
Celera	12	22,292,602 - 22,292,793	UniSTS
RH 3.4 Map	12	296.1	UniSTS
Cytogenetic Map	12	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001105920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC091617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC166568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001939 ⟹ ENSRNOP00000001939

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	20,524,030 - 20,529,947 (-)	Ensembl
Rnor_6.0 Ensembl	12	23,568,094 - 23,574,125 (-)	Ensembl

RefSeq Acc Id:

NM_001105920 ⟹ NP_001099390

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	26,160,643 - 26,166,560 (-)	NCBI
mRatBN7.2	12	20,524,030 - 20,529,947 (-)	NCBI
Rnor_6.0	12	23,568,204 - 23,574,133 (-)	NCBI
Rnor_5.0	12	25,568,554 - 25,574,483 (-)	NCBI
RGSC_v3.4	12	21,639,400 - 21,645,317 (-)	RGD
Celera	12	22,292,412 - 22,298,329 (-)	RGD

Sequence:

show sequence

CCCTAGCTGCTCCGAGGGTGCAATGGCGGCTGTAGCGGCTGAAGTTTCTCATTTGCAGGAGTGC
GGCTGTAAAGGTATCCGGACCTGTCTCATCTGCGAGAGACGACTCCAGAGGGACCCGCCCTGGC
AGATCTCCCTTCAGAAAAAATGCTGTTTCCTCTACTGCCCGGACACAGGCTGGGCCATGGGGGC
CGAGGGCTCTGACTTTGAGGGTTGGGCGTTCCCCTTCCCGGGAGTGACACTCACACAGGACTTT
GTGACCCCGGAGGAAGAAGCCGAGATGGTGCGTCTCATGGACTGCGACCCTTGGAAGCCTTCGC
AGTCCGGGAGGAGGAAGCAGGACTATGGCCCCAAAGTCAATTTTCGGAAGCAGAAGCTGAAGAT
GGCGGGCTTCCAGGGTCTCCCTGGCTTTAGCCAGAAGGTAGTCCAGAGAATGGGCCTTTACCCG
GGGCTGGAGGACTTCCAGCCTGTGGAACAGTGTAACCTGGACTACAGCCCTGAGCGGGGCTCTG
CCATCGACCCCCACCTGGATGACTCCTGGCTGTGGGGCGAGCGCCTGGTGAGCCTCAACCTCCT
GTCGGCCACAGTGGTGTCTATGTCCCGAGAGGCCCCCGGCAGCCTGCTGCTCTGCCCAGTCCCC
TCTGTTGGACCGGATGCTTTTGAGGGCAACAGCGTGGCCCCTAGCAGGTCCGTCCCCTGCCAAG
AGGTGGAGGTGGCCATCTCAGTACCCCGCCGCTCCCTGCTGGTGCTTACAGGGGCCGCCCGGCA
CCAGTGGACACACGCCATCCACCGCAGACACATCAAGGCCCGCCGTGTGTGCGCCACCTTCAGG
GAGCTGGCCAGTGAGTTCCTGCCTGGAGGGAAGCAGCAAGAACTGGGCCAAGAACTGCTGCGGA
CTGCACTGTCCTTCCAAGGGAGACCCGTGTGAATGCCTTCCATGACACAAGAGCTGTCGCTGGC
TGACAGCTTGGCTCCAGCGTGACCGACCACTGGAGGGGCAAACACTGAGGTCTCCCCACAACTC
AGTAAACTCACGGGGTTTTGAGACAAGTGCTCATAGAGCCCAGGCTAGCTCCAATTCTGTAGCT
GAGGATGACCTTGACTTTTCTACCTCTACTTCCAAAAGCTCTGGAATTACAGACGTACACTGCC
AGGCCTGGCTTTATTTTTGTTTTGTTTTGTTTCTCTTTCTGAGACAGGGTCTCTGGCCTGGACA
GGTCTCAAACTCTGTATTCAGCCAAGGATGACTTTGAACTCCCAATCCTCCTGCCTCTACCTCT
TGAATGCTGGGATTGCCAGCACACCGTCATATTCAGCATTTTCGGTGCTGGGATGGCAGCGCGT
GTCCTGCCTACTGAGCTGTACCCCTCCTGTTGGGGTTTTTTGAGTAAAGGTGTCAGGCGGACTA
GACTGGCCTGGTACTCATTGTGTAGCCTGGCTTTGAACCCCCTGATCCTCCTGCCTCAGCCTCC
CAATTGCTGAGATGGCCGTGCACTGGTTAGGTTTTAGTAGGAGTCATCTGACCCCTGACGTTGC
GACAGTCACACACCCTGCCTGGAACTGGTCTGCTGGGCGTGGACTGTGGCCTCTCCAGGTGACG
CAGTATGTCACAGTATGGAGGGATTCAGTCTTTTATCTGGGACGAGCACGATGGCTCAGTGGCT
AAAGGCGCTTGCCACCAAGCCTAATGACCTGAGCTCAGTCTCTGGAATCCACATGATGAAAGGT
GTGTCCCCTGATCTCCCATGTATGTTACCACTCTGATAAAATCCATAATGAACGGAAAACTCTG
GTCTCCTGTGA

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Protein Sequences


Protein RefSeqs	NP_001099390	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66568	(Get FASTA)	NCBI Sequence Viewer
	EDM13320	(Get FASTA)	NCBI Sequence Viewer
	EDM13321	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001939.3

RefSeq Acc Id:

NP_001099390 ⟸ NM_001105920

- UniProtKB:

B2GV83 (UniProtKB/TrEMBL), A6J081 (UniProtKB/TrEMBL), A6J082 (UniProtKB/TrEMBL), F7EZ41 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAVAAEVSHLQECGCKGIRTCLICERRLQRDPPWQISLQKKCCFLYCPDTGWAMGAEGSDFEG
WAFPFPGVTLTQDFVTPEEEAEMVRLMDCDPWKPSQSGRRKQDYGPKVNFRKQKLKMAGFQGLP
GFSQKVVQRMGLYPGLEDFQPVEQCNLDYSPERGSAIDPHLDDSWLWGERLVSLNLLSATVVSM
SREAPGSLLLCPVPSVGPDAFEGNSVAPSRSVPCQEVEVAISVPRRSLLVLTGAARHQWTHAIH
RRHIKARRVCATFRELASEFLPGGKQQELGQELLRTALSFQGRPV

hide sequence

Ensembl Acc Id:

ENSRNOP00000001939 ⟸ ENSRNOT00000001939

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B2GV83-F1-model_v2	AlphaFold	B2GV83	1-301	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698538

Promoter ID:

EPDNEW_R9062

Type:

multiple initiation site

Name:

Alkbh4_1

Description:

alkB homolog 4, lysine demethylase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	23,574,129 - 23,574,189	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308608	AgrOrtholog
BioCyc Gene	G2FUF-19655	BioCyc
Ensembl Genes	ENSRNOG00000001428	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000001939.6	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.590	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7318881	IMAGE-MGC_LOAD
InterPro	AlkB-like_sf	UniProtKB/TrEMBL
	ALKBH4	UniProtKB/TrEMBL
KEGG Report	rno:288587	UniProtKB/TrEMBL
MGC_CLONE	MGC:188199	IMAGE-MGC_LOAD
NCBI Gene	288587	ENTREZGENE
PANTHER	ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 4	UniProtKB/TrEMBL
	PTHR12463	UniProtKB/TrEMBL
PhenoGen	Alkbh4	PhenoGen
RatGTEx	ENSRNOG00000001428	RatGTEx
Superfamily-SCOP	Clavaminate synthase-like	UniProtKB/TrEMBL
UniProt	A6J081	ENTREZGENE, UniProtKB/TrEMBL
	A6J082	ENTREZGENE, UniProtKB/TrEMBL
	B2GV83	ENTREZGENE
	F7EZ41	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	B2GV83	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-12-09	Alkbh4	alkB homolog 4, lysine demethylase	Alkbh4	alkB homolog 4, lysine demthylase	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-07-01	Alkbh4	alkB homolog 4, lysine demthylase	Alkbh4	alkB, alkylation repair homolog 4 (E. coli)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Alkbh4	alkB, alkylation repair homolog 4 (E. coli)	Alkbh4_predicted	alkB, alkylation repair homolog 4 (E. coli) (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Alkbh4_predicted	alkB, alkylation repair homolog 4 (E. coli) (predicted)	RGD1308608_predicted	similar to hypothetical protein FLJ20013 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1308608_predicted	similar to hypothetical protein FLJ20013 (predicted)	LOC288587_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC288587_predicted	similar to hypothetical protein FLJ20013 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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