Cux1 (cut-like homeobox 1) - Rat Genome Database

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Gene: Cux1 (cut-like homeobox 1) Rattus norvegicus
Analyze
Symbol: Cux1 (Ensembl: Cux1-ps1)
Name: cut-like homeobox 1 (Ensembl:cut-like homeobox 1, pseudogene 1)
RGD ID: 620618
Description: Enables protein-macromolecule adaptor activity. Involved in retrograde transport, vesicle recycling within Golgi. Located in Golgi membrane. Orthologous to human CUX1 (cut like homeobox 1); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CCAAT displacement protein; CDP; CDP2; cut (Drosophila)-like 1; cut-like 1; cut-like 1 (Drosophila); Cutl1; homeobox protein cut-like 1; homeobox protein cux-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Cux1-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81225,728,393 - 26,062,497 (+)NCBIGRCr8
mRatBN7.21220,107,062 - 20,425,868 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1220,107,311 - 20,425,866 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl480,269,821 - 80,272,645 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1221,246,514 - 21,548,713 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,859,227 - 22,161,423 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01220,924,790 - 21,227,050 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01223,150,886 - 23,470,095 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1223,151,180 - 23,445,074 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01225,151,301 - 25,470,445 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41221,223,919 - 21,516,938 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11221,468,508 - 21,506,811 (+)NCBI
Celera1221,874,658 - 22,194,905 (+)NCBICelera
Cytogenetic Map12q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Original Reference(s)
Cux1Ratcolorectal cancer exacerbatesISOCUX1 (Homo sapiens)9068941mRNA:increased expression:colorectum (human)RGDPMID:33014778 and REF_RGD_ID:152985540
Cux1Rathepatocellular carcinoma  ISOCUX1 (Homo sapiens)152985541mRNA:increased expression:liver (human)RGD 
Cux1Ratinsulinoma exacerbatesISOCUX1 (Homo sapiens)152985543protein:increased expression:pancreas (human)RGD 
Cux1Ratinsulinoma disease_progressionISOCux1 (Mus musculus)152985543mRNA:increased expression:pancreas (mouse)RGD 
Cux1Ratlung non-small cell carcinoma exacerbatesISOCUX1 (Homo sapiens)152985544mRNA:increased expression:lung (human)RGD 
Cux1Ratpancreatic endocrine carcinoma exacerbatesISOCUX1 (Homo sapiens)9068941protein:increased expression:pancreas (human)RGDPMID:32707646 and REF_RGD_ID:153297777
Cux1Ratstomach cancer exacerbatesISOCUX1 (Homo sapiens)152985542protein:decreased activity:stomach (human)RGD 
Object Symbol
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Original Reference(s)
Cux1RatDuane retraction syndrome  ISOCUX1 (Homo sapiens)8554872ClinVar Annotator: match by term: Duane retraction syndromeClinVarPMID:25741868
Cux1Ratgenetic disease  ISOCUX1 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
Cux1RatGLOBAL DEVELOPMENTAL DELAY WITH OR WITHOUT IMPAIRED INTELLECTUAL DEVELOPMENT  ISOCUX1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25741868 more ...
Cux1Ratintellectual disability  ISOCUX1 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
Cux1Ratmyeloproliferative neoplasm  ISOCUX1 (Homo sapiens)8554872ClinVar Annotator: match by term: Myeloproliferative neoplasmClinVarPMID:25741868
Cux1RatNeurodevelopmental Disorders  ISOCUX1 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
Cux1Ratpleomorphic xanthoastrocytoma  ISOCUX1 (Homo sapiens)8554872ClinVar Annotator: match by term: Pleomorphic xanthoastrocytomaClinVarPMID:28299358
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Original Reference(s)
Cux1RatCarcinogenesis  ISOCUX1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:24316979
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Cux1RatGLOBAL DEVELOPMENTAL DELAY WITH OR WITHOUT IMPAIRED INTELLECTUAL DEVELOPMENT  ISOCUX1 (Homo sapiens)7240710 OMIM 

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Original Reference(s)
Cux1Rat(1->4)-beta-D-glucan multiple interactionsISOCux1 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of CUX1 mRNACTDPMID:36331819
Cux1Rat1,2-dimethylhydrazine increases expressionISOCux1 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of CUX1 mRNACTDPMID:22206623
Cux1Rat17alpha-ethynylestradiol increases expressionISOCux1 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of CUX1 mRNACTDPMID:17942748
Cux1Rat17alpha-ethynylestradiol multiple interactionsISOCux1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of CUX1 mRNACTDPMID:17942748
Cux1Rat17beta-estradiol increases expressionISOCux1 (Mus musculus)6480464Estradiol results in increased expression of CUX1 mRNACTDPMID:39298647
Cux1Rat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISOCUX1 (Homo sapiens)64804642 more ...CTDPMID:31675489
Cux1Rat2,3',4,4',5-Pentachlorobiphenyl increases expressionISOCux1 (Mus musculus)64804642 more ...CTDPMID:31388691
Cux1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOCux1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of CUX1 mRNACTDPMID:21570461 and PMID:24058054
Cux1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOCux1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with AHR gene mutant form] results in decreased expression of CUX1 mRNA and [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of CUX1 mRNACTDPMID:17942748 and PMID:19465110
Cux1Rat2,4,6-tribromophenol decreases expressionISOCUX1 (Homo sapiens)64804642 more ...CTDPMID:31675489
Cux1Rat2-butoxyethanol decreases expressionISOCux1 (Mus musculus)6480464n-butoxyethanol results in decreased expression of CUX1 mRNACTDPMID:19812364
Cux1Rat3,3',5,5'-tetrabromobisphenol A decreases expressionISOCUX1 (Homo sapiens)6480464tetrabromobisphenol A results in decreased expression of CUX1 proteinCTDPMID:31675489
Cux1Rat4,4'-sulfonyldiphenol increases expressionISOCux1 (Mus musculus)6480464bisphenol S results in increased expression of CUX1 mRNACTDPMID:39298647
Cux1Rat4,4'-sulfonyldiphenol affects methylationISOCux1 (Mus musculus)6480464bisphenol S affects the methylation of CUX1 geneCTDPMID:31683443
Cux1Rat4,4'-sulfonyldiphenol decreases methylationISOCUX1 (Homo sapiens)6480464bisphenol S results in decreased methylation of CUX1 geneCTDPMID:31601247
Cux1Rat4-hydroxynon-2-enal decreases expressionISOCUX1 (Homo sapiens)64804644-hydroxy-2-nonenal results in decreased expression of CUX1 mRNACTDPMID:12419474
Cux1Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of CUX1 mRNACTDPMID:24780913
Cux1Ratacrolein multiple interactionsISOCUX1 (Homo sapiens)6480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of CUX1 mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in increased oxidation of CUX1 mRNACTDPMID:32699268
Cux1Ratacrylamide increases expressionEXP 6480464Acrylamide results in increased expression of CUX1 mRNACTDPMID:28959563
Cux1Rataflatoxin B1 decreases methylationISOCUX1 (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of CUX1 geneCTDPMID:27153756

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Biological Process
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Cellular Component
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Original Reference(s)
Cux1Ratcytoplasm located_inISOCux1 (Mus musculus)1624291 PMID:20473291RGDPMID:20473291
Cux1RatGolgi apparatus located_inIEAUniProtKB:P39880 and ensembl:ENSP000002925351600115GO_REF:0000107EnsemblGO_REF:0000107
Cux1RatGolgi apparatus located_inIEAUniProtKB-KW:KW-03331600115GO_REF:0000043UniProtGO_REF:0000043
Cux1RatGolgi apparatus located_inISOCUX1 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Cux1RatGolgi membrane  IDA 1599272 RGD 
Cux1RatGolgi membrane located_inIEAInterPro:IPR0129551600115GO_REF:0000002InterProGO_REF:0000002
Cux1RatGolgi membrane located_inIEAUniProtKB-SubCell:SL-01341600115GO_REF:0000044UniProtGO_REF:0000044
Cux1Ratintracellular membrane-bounded organelle located_inIEAARBA:ARBA000290851600115GO_REF:0000117UniProtGO_REF:0000117
Cux1Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Cux1Ratneuron projection located_inISOCux1 (Mus musculus)1624291 PMID:25100583RGDPMID:25100583
Cux1Ratnucleoplasm located_inIEAUniProtKB:P39880 and ensembl:ENSP000002925351600115GO_REF:0000107EnsemblGO_REF:0000107
Cux1Ratnucleoplasm located_inISOCUX1 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Cux1Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
Cux1Ratnucleus located_inISOCux1 (Mus musculus)1624291 PMID:11544187 more ...RGDPMID:11544187 more ...
Cux1Ratnucleus is_active_inIBAFB:FBgn0004198 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cux1Ratnucleus located_inISOCUX1 (Homo sapiens)1624291 PMID:15656993RGDPMID:15656993
Cux1Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
Cux1Ratnucleus located_inIEAUniProtKB:P39880 and ensembl:ENSP000002925351600115GO_REF:0000107EnsemblGO_REF:0000107
Cux1Ratnucleus located_inIEAUniRule:UR0004010371600115GO_REF:0000104UniProtGO_REF:0000104
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Molecular Function
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Original Reference(s)
Cux1Ratchromatin binding enablesISOCux1 (Mus musculus)1624291 PMID:15994318RGDPMID:15994318
Cux1RatDNA binding enablesIEAUniRule:UR0004010371600115GO_REF:0000104UniProtGO_REF:0000104
Cux1RatDNA binding enablesISOCux1 (Mus musculus)1624291 PMID:15656993RGDPMID:15656993
Cux1RatDNA binding enablesIEAInterPro:IPR001356 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Cux1RatDNA binding enablesIEAUniProtKB-KW:KW-0238 and UniProtKB-KW:KW-03711600115GO_REF:0000043UniProtGO_REF:0000043
Cux1RatDNA-binding transcription factor activity, RNA polymerase II-specific enablesIEAInterPro:IPR0179701600115GO_REF:0000002InterProGO_REF:0000002
Cux1RatDNA-binding transcription factor activity, RNA polymerase II-specific enablesIBAMGI:107321 and PANTHER:PTN0003619041600115GO_REF:0000033GO_CentralGO_REF:0000033
Cux1Ratprotein binding enablesISOCux1 (Mus musculus)1624291UniProtKB:Q8VI24 and PMID:30726206RGDPMID:30726206
Cux1Ratprotein-macromolecule adaptor activity  IPIGolga5 (Rattus norvegicus)1599272 RGD 
Cux1RatRNA polymerase II cis-regulatory region sequence-specific DNA binding enablesISOCux1 (Mus musculus)1624291 PMID:18836447RGDPMID:18836447
Cux1RatRNA polymerase II transcription regulatory region sequence-specific DNA binding enablesIBAMGI:107321 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cux1RatRNA polymerase II transcription regulatory region sequence-specific DNA binding enablesISOCux1 (Mus musculus)1624291 PMID:20510857RGDPMID:20510857
Cux1Ratsequence-specific DNA binding enablesISOCUX1 (Homo sapiens)1624291 PMID:15656993RGDPMID:15656993
Cux1Ratsequence-specific DNA binding enablesIEAUniProtKB:P39880 and ensembl:ENSP000002925351600115GO_REF:0000107EnsemblGO_REF:0000107
Cux1Ratsequence-specific DNA binding enablesISOCux1 (Mus musculus)1624291 PMID:1363085RGDPMID:1363085
Cux1Ratsequence-specific double-stranded DNA binding enablesIEAUniProtKB:P39880 and ensembl:ENSP000002925351600115GO_REF:0000107EnsemblGO_REF:0000107
Cux1Ratsequence-specific double-stranded DNA binding enablesISOCUX1 (Homo sapiens)1624291 PMID:28473536RGDPMID:28473536
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Reference Title
Reference Citation
1. The transcriptional repressor CDP (Cutl1) is essential for epithelial cell differentiation of the lung and the hair follicle. Ellis T, etal., Genes Dev 2001 Sep 1;15(17):2307-19.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. CUX1: a modulator of tumour aggressiveness in pancreatic neuroendocrine neoplasms. Krug S, etal., Endocr Relat Cancer. 2014;21(6):879-90. doi: 10.1530/ERC-14-0152. Epub 2014 Sep 23.
4. Transcription factor CUTL1 is a negative regulator of drug resistance in gastric cancer. Li T, etal., J Biol Chem. 2013 Feb 8;288(6):4135-47. doi: 10.1074/jbc.M112.345942. Epub 2012 Dec 19.
5. Golgin tethers define subpopulations of COPI vesicles. Malsam J, etal., Science. 2005 Feb 18;307(5712):1095-8.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. CUTL1 induces epithelial-mesenchymal transition in non-small cell lung cancer. Wang J, etal., Oncol Rep. 2017 May;37(5):3068-3074. doi: 10.3892/or.2017.5571. Epub 2017 Apr 11.
12. Isolation of two E-box binding factors that interact with the rat tyrosine hydroxylase enhancer. Yoon SO and Chikaraishi DM, J Biol Chem 1994 Jul 15;269(28):18453-62.
13. 5-Hydroxytryptamine Receptor 1D Aggravates Hepatocellular Carcinoma Progression Through FoxO6 in AKT-Dependent and Independent Manners. Zuo X, etal., Hepatology. 2019 May;69(5):2031-2047. doi: 10.1002/hep.30430. Epub 2019 Mar 10.
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PMID:1363085   PMID:11839809   PMID:15656993   PMID:15994318   PMID:18829740   PMID:18836447   PMID:20473291   PMID:20485671   PMID:20510857   PMID:25100583   PMID:27250217   PMID:27986613  



Cux1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81225,728,393 - 26,062,497 (+)NCBIGRCr8
mRatBN7.21220,107,062 - 20,425,868 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1220,107,311 - 20,425,866 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl480,269,821 - 80,272,645 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1221,246,514 - 21,548,713 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,859,227 - 22,161,423 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01220,924,790 - 21,227,050 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01223,150,886 - 23,470,095 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1223,151,180 - 23,445,074 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01225,151,301 - 25,470,445 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41221,223,919 - 21,516,938 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11221,468,508 - 21,506,811 (+)NCBI
Celera1221,874,658 - 22,194,905 (+)NCBICelera
Cytogenetic Map12q12NCBI
CUX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387101,816,007 - 102,283,958 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7101,815,904 - 102,283,958 (+)EnsemblGRCh38hg38GRCh38
GRCh377101,459,287 - 101,927,250 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367101,246,012 - 101,713,970 (+)NCBINCBI36Build 36hg18NCBI36
Celera796,467,441 - 96,936,259 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef796,049,661 - 96,517,462 (+)NCBIHuRef
CHM1_17101,389,393 - 101,855,391 (+)NCBICHM1_1
T2T-CHM13v2.07103,136,249 - 103,601,363 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27100,817,571 - 101,284,708 (+)NCBI
Cux1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395136,276,989 - 136,596,429 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5136,276,989 - 136,596,344 (-)EnsemblGRCm39 Ensembl
GRCm385136,248,135 - 136,567,590 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5136,248,135 - 136,567,490 (-)EnsemblGRCm38mm10GRCm38
MGSCv375136,724,005 - 137,043,301 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365136,532,762 - 136,851,867 (-)NCBIMGSCv36mm8
Celera5133,264,708 - 133,588,225 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map575.96NCBI
Cux1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545615,276,959 - 15,638,004 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545615,292,562 - 15,636,835 (-)NCBIChiLan1.0ChiLan1.0
CUX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26119,827,345 - 120,295,672 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17168,092,003 - 168,560,300 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0793,954,599 - 94,432,697 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17107,191,108 - 107,609,940 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7107,191,124 - 107,609,940 (+)Ensemblpanpan1.1panPan2
CUX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.167,820,154 - 8,108,236 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl67,820,764 - 8,195,631 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha69,514,914 - 9,882,633 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.067,640,261 - 8,004,747 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl67,640,269 - 8,004,638 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.167,624,228 - 7,961,118 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.067,599,495 - 7,936,098 (-)NCBIUNSW_CanFamBas_1.0
UNSW_CanFamBas_1.067,572,159 - 7,599,430 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.067,735,793 - 8,100,353 (-)NCBIUU_Cfam_GSD_1.0
Cux1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344132,239,671 - 132,550,554 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365431,485,970 - 1,796,070 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365431,482,606 - 1,781,294 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl39,317,140 - 9,669,998 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.139,317,145 - 9,669,999 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.239,324,555 - 9,427,871 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12810,901,529 - 11,370,834 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2810,937,512 - 11,370,702 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660705,031,645 - 5,502,364 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cux1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474015,287,421 - 15,664,077 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474015,289,616 - 15,664,090 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Cux1
1850 total Variants

Predicted Target Of
Summary Value
Count of predictions:490
Count of miRNA genes:212
Interacting mature miRNAs:250
Transcripts:ENSRNOT00000001928, ENSRNOT00000044841, ENSRNOT00000059486, ENSRNOT00000075031
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 55 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
61443Btemp2Thermal response to stress QTL 23.30.000094body temperature trait (VT:0005535)core body temperature (CMO:0001036)121502518320794014Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat

1 to 10 of 55 rows
D12Got43  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,217,854 - 20,218,013 (+)MAPPERmRatBN7.2
Rnor_6.01223,262,102 - 23,262,260NCBIRnor6.0
Rnor_5.01225,262,452 - 25,262,610UniSTSRnor5.0
RGSC_v3.41221,333,262 - 21,333,421RGDRGSC3.4
RGSC_v3.41221,333,263 - 21,333,421UniSTSRGSC3.4
RGSC_v3.11221,322,875 - 21,323,033RGD
Celera1221,987,007 - 21,987,165UniSTS
RH 3.4 Map12301.61UniSTS
RH 3.4 Map12301.61RGD
Cytogenetic Map12q12UniSTS
RH133068  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,117,962 - 20,118,168 (+)MAPPERmRatBN7.2
Rnor_6.01223,161,758 - 23,161,963NCBIRnor6.0
Rnor_5.01225,162,108 - 25,162,313UniSTSRnor5.0
RGSC_v3.41221,233,257 - 21,233,462UniSTSRGSC3.4
Celera1221,885,471 - 21,885,676UniSTS
RH 3.4 Map12294.7UniSTS
Cytogenetic Map12q12UniSTS
RH130111  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,409,720 - 20,409,902 (+)MAPPERmRatBN7.2
Rnor_6.01223,453,948 - 23,454,129NCBIRnor6.0
Rnor_5.01225,454,298 - 25,454,479UniSTSRnor5.0
RGSC_v3.41221,525,112 - 21,525,293UniSTSRGSC3.4
Celera1222,178,758 - 22,178,939UniSTS
RH 3.4 Map12298.5UniSTS
Cytogenetic Map12q12UniSTS
BE120355  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81226,044,785 - 26,044,954 (+)Marker Load Pipeline
mRatBN7.21220,408,156 - 20,408,325 (+)MAPPERmRatBN7.2
Rnor_6.01223,452,384 - 23,452,552NCBIRnor6.0
Rnor_5.01225,452,734 - 25,452,902UniSTSRnor5.0
RGSC_v3.41221,523,548 - 21,523,716UniSTSRGSC3.4
Celera1222,177,194 - 22,177,362UniSTS
RH 3.4 Map12299.2UniSTS
Cytogenetic Map12q12UniSTS
BF411168  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,337,058 - 20,337,284 (+)MAPPERmRatBN7.2
Rnor_6.01223,381,291 - 23,381,516NCBIRnor6.0
Rnor_5.01225,381,641 - 25,381,866UniSTSRnor5.0
RGSC_v3.41221,452,456 - 21,452,681UniSTSRGSC3.4
Celera1222,106,150 - 22,106,375UniSTS
RH 3.4 Map12299.4UniSTS
Cytogenetic Map12q12UniSTS
BF412746  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,288,564 - 20,288,658 (+)MAPPERmRatBN7.2
Rnor_6.01223,332,802 - 23,332,895NCBIRnor6.0
Rnor_5.01225,333,152 - 25,333,245UniSTSRnor5.0
RGSC_v3.41221,403,967 - 21,404,060UniSTSRGSC3.4
Celera1222,057,668 - 22,057,761UniSTS
RH 3.4 Map12297.6UniSTS
Cytogenetic Map12q12UniSTS
AU047743  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,315,016 - 20,315,182 (+)MAPPERmRatBN7.2
Rnor_6.01223,359,247 - 23,359,412NCBIRnor6.0
Rnor_5.01225,359,597 - 25,359,762UniSTSRnor5.0
RGSC_v3.41221,430,412 - 21,430,577UniSTSRGSC3.4
Celera1222,084,106 - 22,084,271UniSTS
Cytogenetic Map12q12UniSTS
RH139585  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,425,376 - 20,425,583 (+)MAPPERmRatBN7.2
Rnor_6.01223,469,604 - 23,469,810NCBIRnor6.0
Rnor_5.01225,469,954 - 25,470,160UniSTSRnor5.0
RGSC_v3.41221,540,768 - 21,540,974UniSTSRGSC3.4
Celera1222,194,414 - 22,194,620UniSTS
Cytogenetic Map12q12UniSTS
AU049974  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,175,950 - 20,176,158 (+)MAPPERmRatBN7.2
Rnor_6.01223,220,199 - 23,220,406NCBIRnor6.0
Rnor_5.01225,220,549 - 25,220,756UniSTSRnor5.0
RGSC_v3.41221,291,342 - 21,291,549UniSTSRGSC3.4
Celera1221,943,391 - 21,943,598UniSTS
Cytogenetic Map12q12UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 30 of 46 rows
RefSeq Transcripts NM_001415774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001415775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001070410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003751160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003751161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003752579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003752580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 46 rows

Ensembl Acc Id: ENSRNOT00000044841   ⟹   ENSRNOP00000040645
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1220,108,512 - 20,425,866 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000059486   ⟹   ENSRNOP00000056243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1220,107,311 - 20,409,127 (+)Ensembl
Rnor_6.0 Ensembl1223,151,180 - 23,445,074 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097976   ⟹   ENSRNOP00000089950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1220,107,311 - 20,409,127 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112152   ⟹   ENSRNOP00000080302
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1220,107,311 - 20,409,127 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118907   ⟹   ENSRNOP00000080823
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl480,269,821 - 80,272,645 (+)Ensembl
RefSeq Acc Id: NM_001415774   ⟹   NP_001402703
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,999 - 26,062,497 (+)NCBI
mRatBN7.21220,107,339 - 20,425,868 (+)NCBI
RefSeq Acc Id: NM_001415775   ⟹   NP_001402704
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,999 - 26,062,497 (+)NCBI
mRatBN7.21220,107,339 - 20,425,868 (+)NCBI
RefSeq Acc Id: NM_053860   ⟹   NP_446312
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,971 - 26,045,756 (+)NCBI
mRatBN7.21220,107,311 - 20,409,127 (+)NCBI
RefSeq Acc Id: XM_003751160   ⟹   XP_003751208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,707 - 26,045,756 (+)NCBI
mRatBN7.21220,107,062 - 20,409,127 (+)NCBI
Rnor_6.01223,150,886 - 23,453,354 (+)NCBI
Rnor_5.01225,151,301 - 25,470,445 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003751161   ⟹   XP_003751209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,707 - 26,045,756 (+)NCBI
mRatBN7.21220,107,063 - 20,409,127 (+)NCBI
Rnor_6.01223,150,888 - 23,453,354 (+)NCBI
Rnor_5.01225,151,301 - 25,470,445 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249202   ⟹   XP_006249264
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,933 - 26,045,756 (+)NCBI
mRatBN7.21220,108,619 - 20,409,127 (+)NCBI
Rnor_6.01223,152,420 - 23,453,354 (+)NCBI
Rnor_5.01225,151,301 - 25,470,445 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249204   ⟹   XP_006249266
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,936 - 26,045,756 (+)NCBI
mRatBN7.21220,108,619 - 20,409,127 (+)NCBI
Rnor_6.01223,152,420 - 23,453,354 (+)NCBI
Rnor_5.01225,151,301 - 25,470,445 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769166   ⟹   XP_008767388
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,940 - 26,062,497 (+)NCBI
mRatBN7.21220,108,619 - 20,425,868 (+)NCBI
Rnor_6.01223,152,420 - 23,470,095 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769167   ⟹   XP_008767389
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,914 - 26,062,497 (+)NCBI
mRatBN7.21220,108,619 - 20,425,868 (+)NCBI
Rnor_6.01223,152,420 - 23,470,095 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039089023   ⟹   XP_038944951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,935 - 26,045,756 (+)NCBI
mRatBN7.21220,108,619 - 20,409,127 (+)NCBI
RefSeq Acc Id: XM_063270994   ⟹   XP_063127064
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,935 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063270995   ⟹   XP_063127065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,931 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063270996   ⟹   XP_063127066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,728,658 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063270997   ⟹   XP_063127067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,707 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063270998   ⟹   XP_063127068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,728,393 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271000   ⟹   XP_063127070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,707 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271001   ⟹   XP_063127071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,706 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271002   ⟹   XP_063127072
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,707 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271003   ⟹   XP_063127073
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,706 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271004   ⟹   XP_063127074
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,934 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271005   ⟹   XP_063127075
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,707 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271006   ⟹   XP_063127076
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,707 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271008   ⟹   XP_063127078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,875,403 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271009   ⟹   XP_063127079
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,871 - 26,062,497 (+)NCBI
RefSeq Acc Id: XM_063271010   ⟹   XP_063127080
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,715 - 26,062,497 (+)NCBI
RefSeq Acc Id: XM_063271011   ⟹   XP_063127081
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,714 - 26,062,497 (+)NCBI
RefSeq Acc Id: XM_347163   ⟹   XP_347164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,934 - 26,045,756 (+)NCBI
mRatBN7.21220,108,619 - 20,409,127 (+)NCBI
Rnor_6.01223,152,420 - 23,453,354 (+)NCBI
Rnor_5.01225,151,301 - 25,470,445 (+)NCBI
RGSC_v3.41221,223,919 - 21,516,938 (+)RGD
Sequence:
RefSeq Acc Id: XR_010056362
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,745 - 26,060,312 (+)NCBI
1 to 30 of 40 rows
Protein RefSeqs NP_001402703 (Get FASTA)   NCBI Sequence Viewer  
  NP_001402704 (Get FASTA)   NCBI Sequence Viewer  
  NP_446312 (Get FASTA)   NCBI Sequence Viewer  
  XP_003751208 (Get FASTA)   NCBI Sequence Viewer  
  XP_003751209 (Get FASTA)   NCBI Sequence Viewer  
  XP_006249264 (Get FASTA)   NCBI Sequence Viewer  
  XP_006249266 (Get FASTA)   NCBI Sequence Viewer  
  XP_008767388 (Get FASTA)   NCBI Sequence Viewer  
  XP_008767389 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944951 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127064 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127065 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127066 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127067 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127068 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127070 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127071 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127072 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127073 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127074 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127075 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127076 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127078 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127079 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127080 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127081 (Get FASTA)   NCBI Sequence Viewer  
  XP_347164 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA21123 (Get FASTA)   NCBI Sequence Viewer  
  EDM13310 (Get FASTA)   NCBI Sequence Viewer  
  EDM13311 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 40 rows
1 to 5 of 32 rows
1 to 5 of 32 rows
RefSeq Acc Id: XP_347164   ⟸   XM_347163
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003751208   ⟸   XM_003751160
- Peptide Label: isoform X6
- UniProtKB: A0A8I6G4D0 (UniProtKB/TrEMBL),   A0A8I6AM13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003751209   ⟸   XM_003751161
- Peptide Label: isoform X16
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249264   ⟸   XM_006249202
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249266   ⟸   XM_006249204
- Peptide Label: isoform X10
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
- Sequence:
CASP C-terminal   CUT   Homeobox

Name Modeler Protein Id AA Range Protein Structure
AF-F1M8J7-F1-model_v2 AlphaFold F1M8J7 1-192 view protein structure
AF-P53565-F1-model_v2 AlphaFold P53565 1-1504 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13698540
Promoter ID:EPDNEW_R9059
Type:initiation region
Name:Cux1_1
Description:cut-like homeobox 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01223,151,157 - 23,151,217EPDNEW


1 to 40 of 40 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-19659 BioCyc
Ensembl Genes ENSRNOG00000001424 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000065301 Ensembl
Ensembl Transcript ENSRNOT00000044841 ENTREZGENE
  ENSRNOT00000059486 ENTREZGENE
  ENSRNOT00000059486.6 UniProtKB/Swiss-Prot
  ENSRNOT00000097976 ENTREZGENE
  ENSRNOT00000112152 ENTREZGENE
  ENSRNOT00000149512 ENTREZGENE
  ENSRNOT00000156078 ENTREZGENE
Gene3D-CATH 1.10.260.40 UniProtKB/Swiss-Prot
  Homeodomain-like UniProtKB/Swiss-Prot
InterPro CUT_dom UniProtKB/Swiss-Prot
  Homeobox-like_sf UniProtKB/Swiss-Prot
  Homeobox_CS UniProtKB/Swiss-Prot
  Homeobox_dom UniProtKB/Swiss-Prot
  Lambda_DNA-bd_dom_sf UniProtKB/Swiss-Prot
NCBI Gene 116639 ENTREZGENE
PANTHER CCAAT DISPLACEMENT PROTEIN-RELATED UniProtKB/Swiss-Prot
  HOMEOBOX PROTEIN CUT-LIKE 1 UniProtKB/Swiss-Prot
Pfam CUT UniProtKB/Swiss-Prot
  Homeodomain UniProtKB/Swiss-Prot
PhenoGen Cux1 PhenoGen
PROSITE CUT UniProtKB/Swiss-Prot
  HOMEOBOX_1 UniProtKB/Swiss-Prot
  HOMEOBOX_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000001424 RatGTEx
  ENSRNOG00000065301 RatGTEx
SMART CUT UniProtKB/Swiss-Prot
  HOX UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot
  SSF47413 UniProtKB/Swiss-Prot
UniProt A0A8I5ZR58 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AM13 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G4D0 ENTREZGENE, UniProtKB/TrEMBL
  CUX1_RAT UniProtKB/Swiss-Prot
  F1LRC5 ENTREZGENE
  F1M8J7 ENTREZGENE, UniProtKB/TrEMBL
  P53565 ENTREZGENE
UniProt Secondary F1LRC5 UniProtKB/Swiss-Prot
1 to 40 of 40 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-31 Cux1  cut-like homeobox 1  Cutl1  cut-like 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Cutl1  cut-like 1 (Drosophila)    cut (Drosophila)-like 1  Name updated 1299863 APPROVED
2002-08-07 Cutl1  cut (Drosophila)-like 1      Symbol and Name status set to provisional 70820 PROVISIONAL