Cux1 (cut-like homeobox 1) - Rat Genome Database

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Gene: Cux1 (cut-like homeobox 1) Rattus norvegicus
Analyze
Symbol: Cux1
Name: cut-like homeobox 1
RGD ID: 620618
Description: Enables protein-macromolecule adaptor activity. Involved in retrograde transport, vesicle recycling within Golgi. Located in Golgi membrane. Orthologous to human CUX1 (cut like homeobox 1); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CCAAT displacement protein; CDP; CDP2; cut (Drosophila)-like 1; cut-like 1; cut-like 1 (Drosophila); Cutl1; homeobox protein cut-like 1; homeobox protein cux-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Cux1-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81225,728,393 - 26,062,497 (+)NCBIGRCr8
mRatBN7.21220,107,062 - 20,425,868 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1220,107,311 - 20,425,866 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1221,246,514 - 21,548,713 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,859,227 - 22,161,423 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01220,924,790 - 21,227,050 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01223,150,886 - 23,470,095 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1223,151,180 - 23,445,074 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01225,151,301 - 25,470,445 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41221,223,919 - 21,516,938 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11221,468,508 - 21,506,811 (+)NCBI
Celera1221,874,658 - 22,194,905 (+)NCBICelera
Cytogenetic Map12q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,6-tribromophenol  (ISO)
2-butoxyethanol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dichloromethane  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glycidyl methacrylate  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
herbicide  (ISO)
hydrogen peroxide  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
lidocaine  (EXP)
methamphetamine  (EXP)
methapyrilene  (ISO)
methoxychlor  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
picloram  (ISO)
pirinixic acid  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
succimer  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
topotecan  (EXP)
Tributyltin oxide  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (EXP,ISO)
vanadium atom  (ISO)
vanadium(0)  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
zearalenone  (ISO)
zebularine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
Golgi apparatus  (IEA,ISO)
Golgi membrane  (IDA,IEA)
neuron projection  (ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. The transcriptional repressor CDP (Cutl1) is essential for epithelial cell differentiation of the lung and the hair follicle. Ellis T, etal., Genes Dev 2001 Sep 1;15(17):2307-19.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. CUX1: a modulator of tumour aggressiveness in pancreatic neuroendocrine neoplasms. Krug S, etal., Endocr Relat Cancer. 2014;21(6):879-90. doi: 10.1530/ERC-14-0152. Epub 2014 Sep 23.
4. Transcription factor CUTL1 is a negative regulator of drug resistance in gastric cancer. Li T, etal., J Biol Chem. 2013 Feb 8;288(6):4135-47. doi: 10.1074/jbc.M112.345942. Epub 2012 Dec 19.
5. Golgin tethers define subpopulations of COPI vesicles. Malsam J, etal., Science. 2005 Feb 18;307(5712):1095-8.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. CUTL1 induces epithelial-mesenchymal transition in non-small cell lung cancer. Wang J, etal., Oncol Rep. 2017 May;37(5):3068-3074. doi: 10.3892/or.2017.5571. Epub 2017 Apr 11.
12. Isolation of two E-box binding factors that interact with the rat tyrosine hydroxylase enhancer. Yoon SO and Chikaraishi DM, J Biol Chem 1994 Jul 15;269(28):18453-62.
13. 5-Hydroxytryptamine Receptor 1D Aggravates Hepatocellular Carcinoma Progression Through FoxO6 in AKT-Dependent and Independent Manners. Zuo X, etal., Hepatology. 2019 May;69(5):2031-2047. doi: 10.1002/hep.30430. Epub 2019 Mar 10.
Additional References at PubMed
PMID:1363085   PMID:11839809   PMID:15656993   PMID:15994318   PMID:18829740   PMID:18836447   PMID:20473291   PMID:20485671   PMID:20510857   PMID:25100583   PMID:27250217   PMID:27986613  


Genomics

Comparative Map Data
Cux1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81225,728,393 - 26,062,497 (+)NCBIGRCr8
mRatBN7.21220,107,062 - 20,425,868 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1220,107,311 - 20,425,866 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1221,246,514 - 21,548,713 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,859,227 - 22,161,423 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01220,924,790 - 21,227,050 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01223,150,886 - 23,470,095 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1223,151,180 - 23,445,074 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01225,151,301 - 25,470,445 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41221,223,919 - 21,516,938 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11221,468,508 - 21,506,811 (+)NCBI
Celera1221,874,658 - 22,194,905 (+)NCBICelera
Cytogenetic Map12q12NCBI
CUX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387101,816,007 - 102,283,958 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7101,815,904 - 102,283,958 (+)EnsemblGRCh38hg38GRCh38
GRCh377101,459,287 - 101,927,250 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367101,246,012 - 101,713,970 (+)NCBINCBI36Build 36hg18NCBI36
Celera796,467,441 - 96,936,259 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef796,049,661 - 96,517,462 (+)NCBIHuRef
CHM1_17101,389,393 - 101,855,391 (+)NCBICHM1_1
T2T-CHM13v2.07103,136,249 - 103,601,363 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27100,817,571 - 101,284,708 (+)NCBI
Cux1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395136,276,989 - 136,596,429 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5136,276,989 - 136,596,344 (-)EnsemblGRCm39 Ensembl
GRCm385136,248,135 - 136,567,590 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5136,248,135 - 136,567,490 (-)EnsemblGRCm38mm10GRCm38
MGSCv375136,724,005 - 137,043,301 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365136,532,762 - 136,851,867 (-)NCBIMGSCv36mm8
Celera5133,264,708 - 133,588,225 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map575.96NCBI
Cux1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545615,276,959 - 15,638,004 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545615,292,562 - 15,636,835 (-)NCBIChiLan1.0ChiLan1.0
CUX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26119,827,345 - 120,295,672 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17168,092,003 - 168,560,300 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0793,954,599 - 94,432,697 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17107,191,108 - 107,609,940 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7107,191,124 - 107,609,940 (+)Ensemblpanpan1.1panPan2
CUX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.167,820,154 - 8,108,236 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl67,820,764 - 8,195,631 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha69,514,914 - 9,882,633 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.067,640,261 - 8,004,747 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl67,640,269 - 8,004,638 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.167,624,228 - 7,961,118 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.067,599,495 - 7,936,098 (-)NCBIUNSW_CanFamBas_1.0
UNSW_CanFamBas_1.067,572,159 - 7,599,430 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.067,735,793 - 8,100,353 (-)NCBIUU_Cfam_GSD_1.0
Cux1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344132,239,671 - 132,550,554 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365431,485,970 - 1,796,070 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365431,482,606 - 1,781,294 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl39,317,140 - 9,669,998 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.139,317,145 - 9,669,999 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.239,324,555 - 9,427,871 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12810,901,529 - 11,370,834 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2810,937,512 - 11,370,702 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660705,031,645 - 5,502,364 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cux1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474015,287,421 - 15,664,077 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474015,289,616 - 15,664,090 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cux1
1850 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:490
Count of miRNA genes:212
Interacting mature miRNAs:250
Transcripts:ENSRNOT00000001928, ENSRNOT00000044841, ENSRNOT00000059486, ENSRNOT00000075031
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
61443Btemp2Thermal response to stress QTL 23.30.000094body temperature trait (VT:0005535)core body temperature (CMO:0001036)121502518320794014Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961088935682913Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382528064557Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121983578938193007Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)121961087024139202Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121107382524234895Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121363552330827399Rat
631521Pia12Pristane induced arthritis QTL 128.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)122025941723672083Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat

Markers in Region
D12Got43  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,217,854 - 20,218,013 (+)MAPPERmRatBN7.2
Rnor_6.01223,262,102 - 23,262,260NCBIRnor6.0
Rnor_5.01225,262,452 - 25,262,610UniSTSRnor5.0
RGSC_v3.41221,333,262 - 21,333,421RGDRGSC3.4
RGSC_v3.41221,333,263 - 21,333,421UniSTSRGSC3.4
RGSC_v3.11221,322,875 - 21,323,033RGD
Celera1221,987,007 - 21,987,165UniSTS
RH 3.4 Map12301.61UniSTS
RH 3.4 Map12301.61RGD
Cytogenetic Map12q12UniSTS
RH133068  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,117,962 - 20,118,168 (+)MAPPERmRatBN7.2
Rnor_6.01223,161,758 - 23,161,963NCBIRnor6.0
Rnor_5.01225,162,108 - 25,162,313UniSTSRnor5.0
RGSC_v3.41221,233,257 - 21,233,462UniSTSRGSC3.4
Celera1221,885,471 - 21,885,676UniSTS
RH 3.4 Map12294.7UniSTS
Cytogenetic Map12q12UniSTS
RH130111  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,409,720 - 20,409,902 (+)MAPPERmRatBN7.2
Rnor_6.01223,453,948 - 23,454,129NCBIRnor6.0
Rnor_5.01225,454,298 - 25,454,479UniSTSRnor5.0
RGSC_v3.41221,525,112 - 21,525,293UniSTSRGSC3.4
Celera1222,178,758 - 22,178,939UniSTS
RH 3.4 Map12298.5UniSTS
Cytogenetic Map12q12UniSTS
BE120355  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,408,156 - 20,408,325 (+)MAPPERmRatBN7.2
Rnor_6.01223,452,384 - 23,452,552NCBIRnor6.0
Rnor_5.01225,452,734 - 25,452,902UniSTSRnor5.0
RGSC_v3.41221,523,548 - 21,523,716UniSTSRGSC3.4
Celera1222,177,194 - 22,177,362UniSTS
RH 3.4 Map12299.2UniSTS
Cytogenetic Map12q12UniSTS
BF411168  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,337,058 - 20,337,284 (+)MAPPERmRatBN7.2
Rnor_6.01223,381,291 - 23,381,516NCBIRnor6.0
Rnor_5.01225,381,641 - 25,381,866UniSTSRnor5.0
RGSC_v3.41221,452,456 - 21,452,681UniSTSRGSC3.4
Celera1222,106,150 - 22,106,375UniSTS
RH 3.4 Map12299.4UniSTS
Cytogenetic Map12q12UniSTS
BF412746  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,288,564 - 20,288,658 (+)MAPPERmRatBN7.2
Rnor_6.01223,332,802 - 23,332,895NCBIRnor6.0
Rnor_5.01225,333,152 - 25,333,245UniSTSRnor5.0
RGSC_v3.41221,403,967 - 21,404,060UniSTSRGSC3.4
Celera1222,057,668 - 22,057,761UniSTS
RH 3.4 Map12297.6UniSTS
Cytogenetic Map12q12UniSTS
AU047743  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,315,016 - 20,315,182 (+)MAPPERmRatBN7.2
Rnor_6.01223,359,247 - 23,359,412NCBIRnor6.0
Rnor_5.01225,359,597 - 25,359,762UniSTSRnor5.0
RGSC_v3.41221,430,412 - 21,430,577UniSTSRGSC3.4
Celera1222,084,106 - 22,084,271UniSTS
Cytogenetic Map12q12UniSTS
RH139585  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,425,376 - 20,425,583 (+)MAPPERmRatBN7.2
Rnor_6.01223,469,604 - 23,469,810NCBIRnor6.0
Rnor_5.01225,469,954 - 25,470,160UniSTSRnor5.0
RGSC_v3.41221,540,768 - 21,540,974UniSTSRGSC3.4
Celera1222,194,414 - 22,194,620UniSTS
Cytogenetic Map12q12UniSTS
AU049974  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,175,950 - 20,176,158 (+)MAPPERmRatBN7.2
Rnor_6.01223,220,199 - 23,220,406NCBIRnor6.0
Rnor_5.01225,220,549 - 25,220,756UniSTSRnor5.0
RGSC_v3.41221,291,342 - 21,291,549UniSTSRGSC3.4
Celera1221,943,391 - 21,943,598UniSTS
Cytogenetic Map12q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001415774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001415775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001070410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003751160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003751161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003752579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003752580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_347163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010056362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC091536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC091618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U09229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000044841   ⟹   ENSRNOP00000040645
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1220,108,512 - 20,425,866 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000059486   ⟹   ENSRNOP00000056243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1220,107,311 - 20,409,127 (+)Ensembl
Rnor_6.0 Ensembl1223,151,180 - 23,445,074 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097976   ⟹   ENSRNOP00000089950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1220,107,311 - 20,409,127 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112152   ⟹   ENSRNOP00000080302
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1220,107,311 - 20,409,127 (+)Ensembl
RefSeq Acc Id: NM_001415774   ⟹   NP_001402703
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,999 - 26,062,497 (+)NCBI
mRatBN7.21220,107,339 - 20,425,868 (+)NCBI
RefSeq Acc Id: NM_001415775   ⟹   NP_001402704
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,999 - 26,062,497 (+)NCBI
mRatBN7.21220,107,339 - 20,425,868 (+)NCBI
RefSeq Acc Id: NM_053860   ⟹   NP_446312
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,971 - 26,045,756 (+)NCBI
mRatBN7.21220,107,311 - 20,409,127 (+)NCBI
RefSeq Acc Id: XM_003751160   ⟹   XP_003751208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,707 - 26,045,756 (+)NCBI
mRatBN7.21220,107,062 - 20,409,127 (+)NCBI
Rnor_6.01223,150,886 - 23,453,354 (+)NCBI
Rnor_5.01225,151,301 - 25,470,445 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003751161   ⟹   XP_003751209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,707 - 26,045,756 (+)NCBI
mRatBN7.21220,107,063 - 20,409,127 (+)NCBI
Rnor_6.01223,150,888 - 23,453,354 (+)NCBI
Rnor_5.01225,151,301 - 25,470,445 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249202   ⟹   XP_006249264
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,933 - 26,045,756 (+)NCBI
mRatBN7.21220,108,619 - 20,409,127 (+)NCBI
Rnor_6.01223,152,420 - 23,453,354 (+)NCBI
Rnor_5.01225,151,301 - 25,470,445 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249204   ⟹   XP_006249266
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,936 - 26,045,756 (+)NCBI
mRatBN7.21220,108,619 - 20,409,127 (+)NCBI
Rnor_6.01223,152,420 - 23,453,354 (+)NCBI
Rnor_5.01225,151,301 - 25,470,445 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769166   ⟹   XP_008767388
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,940 - 26,062,497 (+)NCBI
mRatBN7.21220,108,619 - 20,425,868 (+)NCBI
Rnor_6.01223,152,420 - 23,470,095 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769167   ⟹   XP_008767389
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,914 - 26,062,497 (+)NCBI
mRatBN7.21220,108,619 - 20,425,868 (+)NCBI
Rnor_6.01223,152,420 - 23,470,095 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039089023   ⟹   XP_038944951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,935 - 26,045,756 (+)NCBI
mRatBN7.21220,108,619 - 20,409,127 (+)NCBI
RefSeq Acc Id: XM_063270994   ⟹   XP_063127064
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,935 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063270995   ⟹   XP_063127065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,931 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063270996   ⟹   XP_063127066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,728,658 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063270997   ⟹   XP_063127067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,707 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063270998   ⟹   XP_063127068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,728,393 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271000   ⟹   XP_063127070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,707 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271001   ⟹   XP_063127071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,706 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271002   ⟹   XP_063127072
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,707 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271003   ⟹   XP_063127073
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,706 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271004   ⟹   XP_063127074
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,934 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271005   ⟹   XP_063127075
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,707 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271006   ⟹   XP_063127076
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,707 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271008   ⟹   XP_063127078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,875,403 - 26,045,756 (+)NCBI
RefSeq Acc Id: XM_063271009   ⟹   XP_063127079
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,871 - 26,062,497 (+)NCBI
RefSeq Acc Id: XM_063271010   ⟹   XP_063127080
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,715 - 26,062,497 (+)NCBI
RefSeq Acc Id: XM_063271011   ⟹   XP_063127081
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,743,714 - 26,062,497 (+)NCBI
RefSeq Acc Id: XM_347163   ⟹   XP_347164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,934 - 26,045,756 (+)NCBI
mRatBN7.21220,108,619 - 20,409,127 (+)NCBI
Rnor_6.01223,152,420 - 23,453,354 (+)NCBI
Rnor_5.01225,151,301 - 25,470,445 (+)NCBI
RGSC_v3.41221,223,919 - 21,516,938 (+)RGD
Sequence:
RefSeq Acc Id: XR_010056362
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,744,745 - 26,060,312 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001402703 (Get FASTA)   NCBI Sequence Viewer  
  NP_001402704 (Get FASTA)   NCBI Sequence Viewer  
  NP_446312 (Get FASTA)   NCBI Sequence Viewer  
  XP_003751208 (Get FASTA)   NCBI Sequence Viewer  
  XP_003751209 (Get FASTA)   NCBI Sequence Viewer  
  XP_006249264 (Get FASTA)   NCBI Sequence Viewer  
  XP_006249266 (Get FASTA)   NCBI Sequence Viewer  
  XP_008767388 (Get FASTA)   NCBI Sequence Viewer  
  XP_008767389 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944951 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127064 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127065 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127066 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127067 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127068 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127070 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127071 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127072 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127073 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127074 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127075 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127076 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127078 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127079 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127080 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127081 (Get FASTA)   NCBI Sequence Viewer  
  XP_347164 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA21123 (Get FASTA)   NCBI Sequence Viewer  
  EDM13310 (Get FASTA)   NCBI Sequence Viewer  
  EDM13311 (Get FASTA)   NCBI Sequence Viewer  
  EDM13312 (Get FASTA)   NCBI Sequence Viewer  
  EDM13313 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000040645.6
  ENSRNOP00000056243.3
  ENSRNOP00000080302.1
  ENSRNOP00000080823.1
  ENSRNOP00000089950.1
  ENSRNOP00055000322
  ENSRNOP00060015701
GenBank Protein P53565 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_347164   ⟸   XM_347163
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003751208   ⟸   XM_003751160
- Peptide Label: isoform X6
- UniProtKB: A0A8I6G4D0 (UniProtKB/TrEMBL),   A0A8I6AM13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003751209   ⟸   XM_003751161
- Peptide Label: isoform X16
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249264   ⟸   XM_006249202
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249266   ⟸   XM_006249204
- Peptide Label: isoform X10
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767388   ⟸   XM_008769166
- Peptide Label: isoform X20
- UniProtKB: F1M8J7 (UniProtKB/TrEMBL),   A0A8I5ZR58 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767389   ⟸   XM_008769167
- Peptide Label: isoform X21
- UniProtKB: A0A8I5ZR58 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000056243   ⟸   ENSRNOT00000059486
RefSeq Acc Id: NP_446312   ⟸   NM_053860
- Peptide Label: isoform 1
- UniProtKB: P53565 (UniProtKB/Swiss-Prot),   F1LRC5 (UniProtKB/Swiss-Prot),   A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944951   ⟸   XM_039089023
- Peptide Label: isoform X11
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000080302   ⟸   ENSRNOT00000112152
Ensembl Acc Id: ENSRNOP00000040645   ⟸   ENSRNOT00000044841
Ensembl Acc Id: ENSRNOP00000089950   ⟸   ENSRNOT00000097976
RefSeq Acc Id: NP_001402704   ⟸   NM_001415775
- Peptide Label: isoform 3
- UniProtKB: A0A8I5ZR58 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001402703   ⟸   NM_001415774
- Peptide Label: isoform 2
- UniProtKB: A0A8I5ZR58 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127068   ⟸   XM_063270998
- Peptide Label: isoform X8
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127066   ⟸   XM_063270996
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127071   ⟸   XM_063271001
- Peptide Label: isoform X12
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127073   ⟸   XM_063271003
- Peptide Label: isoform X14
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127067   ⟸   XM_063270997
- Peptide Label: isoform X7
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127075   ⟸   XM_063271005
- Peptide Label: isoform X17
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127076   ⟸   XM_063271006
- Peptide Label: isoform X18
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127070   ⟸   XM_063271000
- Peptide Label: isoform X9
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127072   ⟸   XM_063271002
- Peptide Label: isoform X13
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127081   ⟸   XM_063271011
- Peptide Label: isoform X24
- UniProtKB: A0A8I5ZR58 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127080   ⟸   XM_063271010
- Peptide Label: isoform X23
- UniProtKB: A0A8I5ZR58 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127079   ⟸   XM_063271009
- Peptide Label: isoform X22
- UniProtKB: A0A8I5ZR58 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127065   ⟸   XM_063270995
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127074   ⟸   XM_063271004
- Peptide Label: isoform X15
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127064   ⟸   XM_063270994
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127078   ⟸   XM_063271008
- Peptide Label: isoform X19
- UniProtKB: A0A8I6AM13 (UniProtKB/TrEMBL)
Protein Domains
CASP C-terminal   CUT   Homeobox

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M8J7-F1-model_v2 AlphaFold F1M8J7 1-192 view protein structure
AF-P53565-F1-model_v2 AlphaFold P53565 1-1504 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698540
Promoter ID:EPDNEW_R9059
Type:initiation region
Name:Cux1_1
Description:cut-like homeobox 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01223,151,157 - 23,151,217EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620618 AgrOrtholog
BioCyc Gene G2FUF-19659 BioCyc
Ensembl Genes ENSRNOG00000001424 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00000065301 UniProtKB/TrEMBL
  ENSRNOG00055000274 UniProtKB/Swiss-Prot
  ENSRNOG00060011805 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000044841.7 UniProtKB/TrEMBL
  ENSRNOT00000059486.6 UniProtKB/Swiss-Prot
  ENSRNOT00000097976.1 UniProtKB/TrEMBL
  ENSRNOT00000112152.1 UniProtKB/TrEMBL
  ENSRNOT00000118907.1 UniProtKB/TrEMBL
  ENSRNOT00055000459 UniProtKB/Swiss-Prot
  ENSRNOT00060020018 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.260.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.5.1700 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CASP_C UniProtKB/TrEMBL
  CUT_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lambda_DNA-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 116639 ENTREZGENE
PANTHER CCAAT DISPLACEMENT PROTEIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX PROTEIN CUT-LIKE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN CASP UniProtKB/TrEMBL
Pfam CASP_C UniProtKB/TrEMBL
  CUT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cux1 PhenoGen
PROSITE CUT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001424 RatGTEx
  ENSRNOG00000065301 RatGTEx
  ENSRNOG00055000274 RatGTEx
  ENSRNOG00060011805 RatGTEx
SMART CUT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47413 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZR58 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AM13 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G4D0 ENTREZGENE, UniProtKB/TrEMBL
  CUX1_RAT UniProtKB/Swiss-Prot
  F1LRC5 ENTREZGENE
  F1M8J7 ENTREZGENE, UniProtKB/TrEMBL
  P53565 ENTREZGENE
UniProt Secondary F1LRC5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-31 Cux1  cut-like homeobox 1  Cutl1  cut-like 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Cutl1  cut-like 1 (Drosophila)    cut (Drosophila)-like 1  Name updated 1299863 APPROVED
2002-08-07 Cutl1  cut (Drosophila)-like 1      Symbol and Name status set to provisional 70820 PROVISIONAL