Cia25 QTL Report (Rattus norvegicus) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
QTL Registration

QTL: Cia25 (Collagen induced arthritis QTL 25) Rattus norvegicus

Symbol: Cia25
Name: Collagen induced arthritis QTL 25
RGD ID: 1298081
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: joint inflammation composite score   (CMO:0000919)    
LOD Score: 4.7
P Value: Not Available
Variance: Not Available
Inheritance Type: recessive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01222,650,721 - 41,291,738RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01224,663,002 - 43,150,909RGDRnor5.0
RGSC_v3.41220,932,555 - 36,894,750RGDRGSC3.4
RGSC_v3.11220,922,167 - 36,758,138RGD
Cross Type: intercross
Strains Crossed: DA/BklArbN ACI/SegHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Ncf1 is a candidate Gene for Cia25

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
ACI/SegHsd  (IEA)
DA/BklArbN  (IEA)

References

Related QTLs

Related QTL Description Reference
Cia12 maps to same region RGD:1285224


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3447Ptpn11protein tyrosine phosphatase, non-receptor type 11124089551540955999Rat
69430Stx1asyntaxin 1A122468205024710002Rat
619974Aslargininosuccinate lyase123016092230178348Rat
619988Dnah10dynein, axonemal, heavy chain 10123723748237365258Rat
619719Mdh2malate dehydrogenase 2122394145123954406Rat
619781Erp29endoplasmic reticulum protein 29124061937740625884Rat
61307Ncf1neutrophil cytosolic factor 1122549710425506300Rat
3325Phkg1phosphorylase kinase catalytic subunit gamma 1123045043130464314Rat
61974Hpd4-hydroxyphenylpyruvate dioxygenase123882860638839956Rat
69284Sh2b2SH2B adaptor protein 2122347147723501043Rat
62019Clip2CAP-GLY domain containing linker protein 2122517295725236935Rat
62055Limk1LIM domain kinase 1122503663025070538Rat
62073P2rx4purinergic receptor P2X 4123930802239325673Rat
3241P2rx7purinergic receptor P2X 7123935361339396042Rat
69399VgfVGF nerve growth factor inducible122267730222680630Rat
621006Atp6v0a2ATPase H+ transporting V0 subunit a2123736832137398233Rat
620305Hip1huntingtin interacting protein 1122418079524315373Rat
628817Fzd9frizzled class receptor 9122447398124476295Rat
631346Trim50tripartite motif-containing 50122434842624365467Rat
620680Pom121POM121 transmembrane nucleoporin122431657524341943Rat
631339Plod3procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3122271642122726982Rat
2772Gusbglucuronidase, beta123020206630215583Rat
68335Porcytochrome p450 oxidoreductase122399841124017063Rat
620092Camkk2calcium/calmodulin-dependent protein kinase kinase 2123925340939302601Rat
620618Cux1cut-like homeobox 1122315088623470095Rat
620753CrcpCGRP receptor component123012523730160857Rat
727862Ift81intraflagellar transport 81123942016139507412Rat
620073Rph3arabphilin 3A124107329641149799Rat
620856Gtf2ird1GTF2I repeat domain containing 1122526405225370947Rat
620254Abcb9ATP binding cassette subfamily B member 9123792397437956678Rat
621244Ubcubiquitin C123663845736642734Rat
67404Clip1CAP-GLY domain containing linker protein 1123834520338452650Rat
69243Tmed2transmembrane p24 trafficking protein 2123747125937480344Rat
620171Trafd1TRAF type zinc finger domain containing 1124069552040709438Rat
631397Lat2linker for activation of T cells family, member 2122511409925128381Rat
621615Hip1rhuntingtin interacting protein 1 related123802451738053184Rat
620400MlxiplMLX interacting protein-like122459064524619639Rat
708522Aacsacetoacetyl-CoA synthetase123651239336555694Rat
621110Psmd9proteasome 26S subunit, non-ATPase 9123878653938805121Rat
708533Rimbp2RIMS binding protein 2123139322931605567Rat
621198Rfc2replication factor C subunit 2122513037525143480Rat
727952Hcar2hydroxycarboxylic acid receptor 2123816046438161546Rat
621760Oas1a2'-5' oligoadenylate synthetase 1A124120068041211393Rat
619826Rpl6ribosomal protein L6124087757840882032Rat
1304672Castor2cytosolic arginine sensor for mTORC1 subunit 2122559580025638806Rat
67394Elnelastin122497847825021864Rat
1304681Abhd11abhydrolase domain containing 11122472227724725760Rat
1303140Rilpl2Rab interacting lysosomal protein-like 2123754491837556453Rat
3249Serpine1serpin family E member 1122264110422651482Rat
620819Eif2b1eukaryotic translation initiation factor 2B subunit alpha123744413637452391Rat
1303034Gpn3GPN-loop GTPase 3123967074639679364Rat
628636Rnf34ring finger protein 34123916429039185209Rat
1305685Naa25N(alpha)-acetyltransferase 25, NatB auxiliary subunit124062800540680421Rat
620606Zp3zona pellucida glycoprotein 3122373522523752734Rat
708469Slc15a4solute carrier family 15 member 4123275382432773277Rat
735062Tmem132dtransmembrane protein 132D123193434332607768Rat
62002Ywhagtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma122378954723817884Rat
61306Hspb1heat shock protein family B (small) member 1122383939023841051Rat
2174Atp2a2ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2123955390339603326Rat
1306837Dhx37DEAH-box helicase 37123659405836614165Rat
620643Vps33aVPS33A core subunit of CORVET and HOPS complexes123845981638482903Rat
1304576Vps37bVPS37B subunit of ESCRT-I123798479038023369Rat
1305004Sfswapsplicing factor SWAP123074056330811015Rat
1305845Styxl1serine/threonine/tyrosine interacting-like 1122395456323987155Rat
1305911Ap1s1adaptor related protein complex 1 subunit sigma 1122266512822676079Rat
1306125Anapc5anaphase-promoting complex subunit 5123920913439242696Rat
1307973Rilpl1Rab interacting lysosomal protein-like 1123749032037528393Rat
621467Adam1aADAM metallopeptidase domain 1a124053373140536632Rat
1305843Caln1calneuron 1122930711729796996Rat
1310656Pheta1PH domain containing endocytic trafficking adaptor 1124022531640230573Rat
1304896Glt1d1glycosyltransferase 1 domain containing 1123266666432749617Rat
1310005Sbno1strawberry notch homolog 1123759369237650761Rat
1304763Cct6achaperonin containing TCP1 subunit 6A123049158430501813Rat
1305370Ift22intraflagellar transport 22122280438422811036Rat
3377Ppp1ccprotein phosphatase 1 catalytic subunit gamma123986430239882030Rat
1307435Gtf2ird2GTF2I repeat domain containing 2122550905925555554Rat
708393Oas1b2-5 oligoadenylate synthetase 1B124125576241266430Rat
620367RanRAN, member RAS oncogene family123131955631324105Rat
1308332Vps29VPS29 retromer complex component123969006939699114Rat
1311043SbdsSBDS, ribosome maturation factor122992144329930602Rat
1311985Arpc3actin related protein 2/3 complex, subunit 3123965395139667817Rat
1310885Diablodiablo, IAP-binding mitochondrial protein123849023038503344Rat
1307295Rabgef1RAB guanine nucleotide exchange factor 1122996013230004727Rat
1359379Oas1i2 ' -5 ' oligoadenylate synthetase 1I124115548941167501Rat
1309774Zcchc8zinc finger CCHC-type containing 8123830366538327174Rat
2302Scarb1scavenger receptor class B, member 1123669495236761445Rat
1311541Mmp17matrix metallopeptidase 17123070190030728683Rat
1311541Mmp17matrix metallopeptidase 17123035387430356526Rat
1311873Orai1ORAI calcium release-activated calcium modulator 1123898190338995570Rat
1310420Tyw1tRNA-yW synthesizing protein 1 homolog122982499029919240Rat
1310861Fam216afamily with sequence similarity 216, member A123967968839688831Rat
1310867Pitpnm2phosphatidylinositol transfer protein, membrane-associated 2123780533237903856Rat
1310724Snrnp35small nuclear ribonucleoprotein U11/U12 subunit 35123753108237538823Rat
1308231Rhbdd2rhomboid domain containing 2122409113224102081Rat
69219Aldh2aldehyde dehydrogenase 2 family member124046641840498813Rat
1310788Hvcn1hydrogen voltage-gated channel 1123982281439851093Rat
1310198Polr2jRNA polymerase II subunit J122358722223592774Rat
1308664Cdk2ap1cyclin-dependent kinase 2 associated protein 1123766836937677067Rat
1310245Ccl24C-C motif chemokine ligand 24122413152924152626Rat
1308608Alkbh4alkB homolog 4, lysine demethylase122356820423574133Rat
1308764Psphphosphoserine phosphatase123051412830526551Rat
1308473Tpst1tyrosylprotein sulfotransferase 1123004575330112377Rat
1333968Olr1863-psolfactory receptor pseudogene 1863123479975834800396Rat
1308223Rad9bRAD9 checkpoint clamp component B123969907639731218Rat
1305494Gtf2h3general transcription factor IIH subunit 3123742755637444027Rat
1309612B3gnt4UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4123850336138506793Rat
1310217Kdm2blysine demethylase 2B123902192439161954Rat
1306970Ssc4dscavenger receptor cysteine rich family member with 4 domains122375282323769466Rat
1305967Cux2cut-like homeobox 2124001677440221067Rat
1306668Fis1fission, mitochondrial 1122275048522765324Rat
1307558Rcc1lRCC1 like122556187125592337Rat
1309615Upk3buroplakin 3B122367616923682395Rat
1308926Fkbp6FKBP prolyl isomerase family member 6122436594124438088Rat
1310213Orai2ORAI calcium release-activated calcium modulator 2122354448323564602Rat
1306980Piwil1piwi-like RNA-mediated gene silencing 1123160864131629961Rat
1310159Acad10acyl-CoA dehydrogenase family, member 10124041791840460562Rat
1306637Atxn2ataxin 2124026460140335637Rat
1310293Ncor2nuclear receptor co-repressor 2123687191737033701Rat
1307650Mrps17mitochondrial ribosomal protein S17123057038630573670Rat
1307657Arl6ip4ADP-ribosylation factor like GTPase 6 interacting protein 4123790437637906521Rat
1310678Cldn15claudin 15122273819822750392Rat
1307932Cldn4claudin 4122476121024763008Rat
1307905Kntc1kinetochore associated 1123820046338274162Rat
1309268Nsun5NOP2/Sun RNA methyltransferase 5122434194024346900Rat
1310594Ogfod22-oxoglutarate and iron-dependent oxygenase domain containing 2123790713037910446Rat
1310349Oas1d2'-5' oligoadenylate synthetase 1D124117947741188796Rat
1309762Hectd4HECT domain E3 ubiquitin protein ligase 4124071207840860930Rat
68411Sh2b3SH2B adaptor protein 3124026199040265757Rat
1310383Pptc7protein phosphatase targeting COQ7123973110739769480Rat
1561903Tmem270transmembrane protein 270122480320424808287Rat
1564882Rsrc2arginine and serine rich coiled-coil 2123827429038294294Rat
1559821RGD1559821similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle123318239433183048Rat
1359732Oas1h2 ' -5 ' oligoadenylate synthetase 1H124121458741224254Rat
1561461Lrrc43leucine rich repeat containing 43123850710238524715Rat
1566421Nipsnap2nipsnap homolog 2123052754030566090Rat
1359647Oas1f2 ' -5 ' oligoadenylate synthetase 1F124122791041237209Rat
1563240Ervfrd-1endogenous retrovirus group FRD member 1, envelope122516113025168182Rat
1563253Sumf2sulfatase modifying factor 2123046502530490683Rat
1560258Nupr2nuclear protein 2, transcriptional regulator123030093630304041Rat
1562334Ccdc63coiled-coil domain containing 63123990512039950719Rat
1561886RGD1561886similar to ribosomal protein L27123719454137195050Rat
1560774MlxipMLX interacting protein123856743838638952Rat
1359611Oas1e2'-5' oligoadenylate synthetase 1E124128147941290500Rat
1559988Zbed5zinc finger, BED-type containing 5123030846930314520Rat
1303249Vkorc1l1vitamin K epoxide reductase complex, subunit 1-like 1123021882530268990Rat
1564113Mapkapk5MAPK activated protein kinase 5124051037840529332Rat
1334044Olr1822-psolfactory receptor pseudogene 1822123601357036014197Rat
1311474Tmem120atransmembrane protein 120A122398959623998257Rat
1359222Eif4heukaryotic translation initiation factor 4H122509311925109805Rat
1311927Anapc7anaphase promoting complex subunit 7123961389839641999Rat
1564245Myl2myosin light chain 2123995186339959065Rat
727961Gtf2igeneral transcription factor II I122541080425487970Rat
1303319Tmem248transmembrane protein 248122993172829958050Rat
1359442Lrwd1leucine-rich repeats and WD repeat domain containing 1122357423423587262Rat
1566191Tmem132btransmembrane protein 132B123596971836398233Rat
1586391Ccdc62coiled-coil domain containing 62123805753238093916Rat
2558Stx2syntaxin 2123132420331360249Rat
1583828LOC363903similar to ribosomal protein S13122417284024173294Rat
1561711Bri3bpBri3 binding protein123657601836587839Rat
1587560Kmt5alysine methyltransferase 5A123755815037581183Rat
1584200Denrdensity regulated reinitiation and release factor123809571738117758Rat
1561790Dtx2deltex E3 ubiquitin ligase 2122368795823727594Rat
1583091Morn3MORN repeat containing 3123895319938976520Rat
1583094LOC687612hypothetical protein LOC687612123894451238945148Rat
1583824Tmem132ctransmembrane protein 132C123280637233130746Rat
1583825Fzd10frizzled class receptor 10123175740731760604Rat
1583826LOC363907similar to Purine nucleoside phosphorylase (Inosine phosphorylase) (PNP)122694367226947876Rat
1583827LOC363906hypothetical LOC363906122515673725157396Rat
1563482Mtrfrmitochondrial translation release factor in rescue123768015237682994Rat
1582914Kctd7potassium channel tetramerization domain containing 7123002408030033357Rat
1561258Myl10myosin light chain 10122301181723075558Rat
1563452Galnt17polypeptide N-acetylgalactosaminyltransferase 17122838187929268457Rat
1564948Cfap251cilia and flagella associated protein 251123870891538781598Rat
1566266Tctn1tectonic family member 1123979094839828215Rat
1587769Vps37dVPS37D subunit of ESCRT-I122465134224656793Rat
1586364Hcar1hydroxycarboxylic acid receptor 1123814517738146232Rat
1591401Col26a1collagen type XXVI alpha 1 chain122283486622980603Rat
1587868Srrm3serine/arginine repetitive matrix 3122385540023925793Rat
1592278Frg1l1FSHD region gene 1-like 1123400385634004722Rat
1585128Bcl7aBAF chromatin remodeling complex subunit BCL7A123865929438691191Rat
1589742Bud23BUD23, rRNA methyltransferase and ribosome maturation factor122466962624680833Rat
1585183Il31interleukin 31123852757538538086Rat
1587817Ccl26C-C motif chemokine ligand 26122415718224161870Rat
1584031Tmem120btransmembrane protein 120B123889484738916237Rat
1584038Rhofras homolog family member F, filopodia associated123887976338894095Rat
1588881Mettl27methyltransferase like 27122476735124775891Rat
1585479Abhd11-as1ABHD11 antisense RNA 1 (tail to tail)122472119024722177Rat
1565457Rasa4RAS p21 protein activator 4122359698923624386Rat
1586551BrapBRCA1 associated protein124038189240417764Rat
1585449LOC686150similar to actin related protein 2/3 complex, subunit 5122474411724745066Rat
1595783Dnajc30DnaJ heat shock protein family (Hsp40) member C30122466839824669464Rat
1597090Bcl7bBAF chromatin remodeling complex subunit BCL7B122454374824557093Rat
1601131Ccdc92coiled-coil domain containing 92123721073537237848Rat
1596066Tmem116transmembrane protein 116124053726140618805Rat
1597089Baz1bbromodomain adjacent to zinc finger domain, 1B122447888224536851Rat
1595708Prkrip1PRKR interacting protein 1122351498723533278Rat
1593402LOC690669similar to Spindlin-like protein 2 (SPIN-2)123507481635075519Rat
1592588Mogat3monoacylglycerol O-acyltransferase 3122270862222710787Rat
1594795Adgrd1adhesion G protein-coupled receptor D1123113480631249594Rat
1588777Rflnarefilin A123703873237047628Rat
1594709LOC690551similar to Peptidyl-prolyl cis-trans isomerase A (PPIase) (Rotamase) (Cyclophilin A) (Cyclosporin A-binding protein) (SP18)124098148740981996Rat
1594781LOC689271similar to ATP synthase, H+ transporting, mitochondrial Fo complex, subunit f, isoform 2123125812931258546Rat
1596186Septin14septin 14123060016230623173Rat
1595038Tbl2transducin (beta)-like 2122456584324578855Rat
1598237Upk3bl1uroplakin 3B like 1122365499623661009Rat
1598368Mphosph9M-phase phosphoprotein 9123770028237766487Rat
1591895Tctn2tectonic family member 2123740089637427256Rat
1598196LOC501838similar to 60S ribosomal protein L32123933566839337002Rat
1598198LOC501835similar to 40S ribosomal protein S9123019322130194563Rat
2322870Znhit1zinc finger, HIT-type containing 1122272664322732917Rat
2320799LOC10036456140S ribosomal protein S27-like124066904740669754Rat
2322461LOC100360290ribosomal protein S20-like124068584640686372Rat
2322512LOC100360238rCG21419-like124055178640556984Rat
2323325Setd1bSET domain containing 1B, histone lysine methyltransferase123884316738869180Rat
2323644LOC100359550protein S100-A11-like123833986338340304Rat
2324513LOC10036254139S ribosomal protein L23, mitochondrial-like123386054333860971Rat
2323959Auts2activator of transcription and developmental regulator AUTS2122715536228252752Rat
2324094Ddx55DEAD-box helicase 55123745300537468935Rat
2324823LOC100363066ribosomal protein L38-like123962854639628858Rat
2324824Zfp11zinc finger protein 11123065524530668370Rat
4888576Mir702microRNA 702122272184622721952Rat
6488308LOC10091219440S ribosomal protein SA-like122581538325821742Rat
6488068LOC100912262general transcription factor II-I repeat domain-containing protein 1-like122901222929080026Rat
6492489LOC100911540guanine nucleotide-binding protein subunit beta-2-like 1-like123590536235906429Rat
6487394LOC100912379neutrophil cytosol factor 1-like122897652828978633Rat
6491226Zfp664zinc finger protein 664123620132736203396Rat
6498646LOC100910427probable peptide chain release factor C12orf65 homolog, mitochondrial-like123767868237684533Rat
6496638LOC100910788coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial-like123044334330446075Rat
6496734LOC100910802uncharacterized LOC100910802122278423322799362Rat
7489014Mir6322microRNA 6322122682506026825178Rat
7528898LOC10254708760S ribosomal protein L7-like123928488239285960Rat
7507387LOC102556456transmembrane protein 254-like123309252533095657Rat
7501350LOC102550242ubiquitin-conjugating enzyme E2 variant 1-like123893553638944189Rat
7503829LOC102548903uncharacterized LOC102548903123965424539660733Rat
7519457LOC102555730uncharacterized LOC102555730123684325936844420Rat
7520086LOC102553484uncharacterized LOC102553484122497367924980976Rat
7634124LOC102550309uncharacterized LOC102550309123510001735105553Rat
7559672LOC102554701zinc finger protein AEBP2-like122846925328477633Rat
7587101LOC102553721uncharacterized LOC102553721122564866225654744Rat
7594601LOC102551204uncharacterized LOC102551204122268063622685476Rat
7572143LOC102553887uncharacterized LOC102553887122633794826351461Rat
7543130LOC102552690uncharacterized LOC102552690123798001337984712Rat
7543274LOC102556457F-box only protein 22-like124031720840320831Rat
7573572LOC102549705uncharacterized LOC102549705123989078339899849Rat
7580031LOC102555795uncharacterized LOC102555795123718175137183042Rat
7549056LOC102554260uncharacterized LOC102554260122709171827100401Rat
7563147LOC102548966uncharacterized LOC102548966122431406624316679Rat
7563841LOC102552626uncharacterized LOC102552626123782675137837870Rat
7586081LOC10255561040S ribosomal protein S2-like122620936826214894Rat
7568494LOC102556093uncharacterized LOC102556093123887013238878652Rat
7586771LOC102547495uncharacterized LOC102547495123882128738828645Rat
7677226LOC102556092uncharacterized LOC102556092123718383937210624Rat
7684404LOC102550645uncharacterized LOC102550645122928902029294566Rat
7689144LOC102555340uncharacterized LOC102555340123094591230954007Rat
7734862Lraplocus regulating alcohol preference123901625839017876Rat
7689818LOC102553558uncharacterized LOC102553558122514838125150352Rat
7668786LOC102549552uncharacterized LOC102549552123388218233884539Rat
7720926LOC102550116zinc finger protein with KRAB and SCAN domains 7-like123064142430647457Rat
7709136LOC102550582uncharacterized LOC102550582123556197335567921Rat
7710500LOC102546488uncharacterized LOC102546488123899575339005428Rat
9133337LOC103691347eukaryotic translation initiation factor 1 pseudogene123733163937332271Rat
9188281LOC103691337uncharacterized LOC103691337123335267333357264Rat
9192914LOC103691322uncharacterized LOC103691322123013684030139887Rat
9170642LOC103691310autism susceptibility gene 2 protein-like122715536427647641Rat
9221590LOC103691323heterogeneous nuclear ribonucleoprotein Q pseudogene123062420930626524Rat
9351682LOC103693647kinetochore-associated protein 1-like123823512538237872Rat
9271205LOC103691316uncharacterized LOC103691316122884306328844825Rat
9271754LOC103693636uncharacterized LOC103693636122537249725377457Rat
9310086LOC103693638gametogenetin-like122815519628160152Rat
9311981LOC103691302uncharacterized LOC103691302122548792125499152Rat
9318934LOC103693646uncharacterized LOC103693646123808179038082365Rat
9235993LOC103691507zinc finger protein 471-like123062629730641417Rat
9242288LOC103691506claudin-4-like122478563724786293Rat
9386528LOC10369150960S ribosomal protein L7-like123325030533288256Rat
9379917LOC103691346uncharacterized LOC103691346123683545536838332Rat
9339716LOC103690026S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase-like122918736829231035Rat
9342443LOC103693640MLV-related proviral Env polyprotein-like123042533230427226Rat
9461615LOC103691351uncharacterized LOC103691351123791050537912208Rat
9465680LOC103691295uncharacterized LOC103691295122431658324319209Rat
9331224LOC103691357uncharacterized LOC103691357123987469639875450Rat
9390395LOC103691343uncharacterized LOC103691343123388785633896540Rat
9474710LOC103693639heterogeneous nuclear ribonucleoprotein Q pseudogene123033430130335350Rat
9402189LOC103691309uncharacterized LOC103691309122742162227424633Rat
9443604LOC103691321interferon-induced transmembrane protein 1 pseudogene122989628029898079Rat
9447806LOC103693648wiskott-Aldrich syndrome protein family member 1-like123899548338998892Rat
9451108LOC103691320uncharacterized LOC103691320122938338729384947Rat
11361258LOC108348169probable peptide chain release factor C12orf65 homolog, mitochondrial123768605137699733Rat
11355720LOC108352442uncharacterized LOC108352442123290338532919782Rat
11371096LOC108352485MLV-related proviral Env polyprotein-like123032210530324506Rat
11367381Trnaf-gaa4transfer RNA phenylalanine (anticodon GAA) 4123662320136623273Rat
11472079LOC108352443uncharacterized LOC108352443123282760232837733Rat
11435442LOC108352438uncharacterized LOC108352438122673944526827888Rat
11457842LOC108352444uncharacterized LOC108352444123330768833308604Rat
11445374LOC108352447uncharacterized LOC108352447123965616139659140Rat
11363226LOC108352445uncharacterized LOC108352445123368746733694713Rat
11459746LOC108352434uncharacterized LOC108352434122375526823757561Rat
11438813LOC108352486heterogeneous nuclear ribonucleoprotein Q-like123032485730338434Rat
11371095LOC10835244660S ribosomal protein L21 pseudogene123949620939497178Rat
11440418Trnad-guc4transfer RNA aspartic acid (anticodon GUC) 4123662033836620409Rat
11442335LOC108352436uncharacterized LOC108352436122416284124166326Rat
11405284LOC108352488uncharacterized LOC108352488123392105433975355Rat
11406627LOC10835250140S ribosomal protein S20-like123180506831805515Rat
11419895LOC108352449P2X purinoceptor 7-like123992494939929929Rat
11424350LOC108352437uncharacterized LOC108352437122537249725375302Rat
11425977Trnad-guc5transfer RNA aspartic acid (anticodon GUC) 5123662365636623727Rat
11384356LOC108352487heterogeneous nuclear ribonucleoprotein Q pseudogene123062545430648708Rat
11373727Trnaa-ugc4transfer RNA alanine (anticodon UGC) 4123662497336625044Rat
11412175LOC108352450uncharacterized LOC108352450124097084740980813Rat
11405154LOC10835248440S ribosomal protein S14 pseudogene122507854125079054Rat
11500192LOC108352498uncharacterized LOC108352498122766025627667957Rat
11476624LOC108352489Y-linked testis-specific protein 1-like123481510934817152Rat
11505017LOC108352433uncharacterized LOC108352433122268418622698570Rat
11499585LOC108352435uncharacterized LOC108352435122392834923938612Rat
11482332LOC10835243940S ribosomal protein S15a pseudogene122962714929627592Rat
11517466Trnaa-ugc3transfer RNA alanine (anticodon UGC) 3123661973836619809Rat
11517723LOC108352448uncharacterized LOC108352448123974142739748976Rat
11518793LOC108352441uncharacterized LOC108352441123163007331633904Rat
11492414LOC10835244040S ribosomal protein S25 pseudogene123064966830650107Rat
11493793LOC108352502uncharacterized LOC108352502123422580134232672Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10125DXMgh7230123928233939282571Ratregion
10888D12Wox1092122394156323941651Ratregion
11051D12Mit2217122265070222650918Ratregion
11052D12Wox11196122265071822650917Ratregion
11053D12Wox12198122265072122650922Ratregion
33955D1Mit22124123681496536815102Ratregion
34017D12Mit9142122485890924859050Ratregion
34070D12Mgh7138124122897541229112Ratregion
34246D12Mgh3118122728547327285590Ratregion
34417D12Mgh2163122287629722876459Ratregion
34729D12Mgh5132123172356531723688Ratregion
11449D12Wox14158122501336425013521Ratregion
11450D12Mgh12140122500652225006661Ratregion
11451D12Mgh13145122501334725013485Ratregion
36025D12Rat23154122719009627190240Ratregion
36101D12Rat15152123197542431975590Ratregion
36119D12Rat94265123274850532748771Ratregion
36125D12Rat14185123230502032305182Ratregion
36344D12Mit10121122667079726670921Ratregion
37250D12Rat26201122571144825711626Ratregion
37334D12Rat46142123423293034233087Ratregion
37346D12Rat27205122786940927869615Ratregion
35433D12Rat17149123596436035964508Ratregion
35479D12Rat8158122579911925799259Ratregion
36805D12Rat13170122788282827882997Ratregion
37830D12Rat36200123752188437522089Ratregion
37878D12Rat33221122419370724193945Ratregion
36490D12Rat18161124021591240216072Ratregion
36538D12Rat7161122299072622990886Ratregion
36755D12Rat11165122801414728014311Ratregion
36795D12Rat24174123780070237800875Ratregion
35126D12Rat16170123426490634265075Ratregion
35889D12Rat10155122670997426710128Ratregion
35923D12Rat12152122791119627911339Ratregion
39626D12Rat75215122999808229998298Ratregion
39844D12Rat76109123197981031979901Ratregion
38084D12Rat96214123706260837062809Ratregion
38108D12Rat50244123942162339421866Ratregion
40454D12Rat100133123995010139950233Ratregion
40668D12Rat78216123627694936277154Ratregion
40702D12Rat69211122299247922992678Ratregion
38404D12Rat45248122821709828217343Ratregion
40112D12Rat84167124043556140435727Ratregion
40214D12Rat83158123013793630138078Ratregion
39060D12Rat30201123840880038409001Ratregion
39218D12Rat35200122593822725938420Ratregion
39236D12Rat51213122432070824320928Ratregion
39332D12Rat52181124084240540842549Ratregion
39446D12Rat99231122895930628959532Ratregion
41962D12Arb6290124129137841291738Ratregion
41962D12Arb6290124121344841213801Ratregion
41156D12Rat79221124061778340618007Ratregion
41384D12Rat70154122268222822682373Ratregion
41440D12Rat74137122798203027982170Ratregion
42965D12Rat92248122382535523825588Ratregion
42966D12Rat95203123335318933353399Ratregion
42967D12Rat106206123422778834227989Ratregion
42969D12Rat115215122714130827141504Ratregion
40766D12Rat77100123400006234000159Ratregion
40986D12Rat72309122497553324975841Ratregion
41626D12Rat93132123228978232289887Ratregion
41786D12Rat101106124033110940331214Ratregion
41826D12Rat107223123755388037554080Ratregion
44997D12Got78173123901079639010968Ratregion
44998D12Got79153123991765539917807Ratregion
45001D12Got70226123426486334265088Ratregion
44965D12Got40230122291024122910470Ratregion
44966D12Got42161122285285722853017Ratregion
44967D12Got41157122285221322852369Ratregion
44969D12Got102135122416750124167635Ratregion
44970D12Got45149122496180224961950Ratregion
44971D12Got46216122901414729014362Ratregion
44971D12Got46216122530711825307333Ratregion
44973D12Got103249122392175123922001Ratregion
44974D12Got48180122591507825915257Ratregion
44975D12Got49185122607906626079250Ratregion
44976D12Got47111122646257126462681Ratregion
44977D12Got50298122652067126520968Ratregion
44978D12Got51205122663166326631867Ratregion
44979D12Got55222122691536826915589Ratregion
44980D12Got58145122887684528876989Ratregion
44981D12Got67241122955132329551563Ratregion
44982D12Got57162122765878027658941Ratregion
44983D12Got104196122935053029350725Ratregion
44986D12Got68234123093500330935236Ratregion
44989D12Got64228123103369431033921Ratregion
44990D12Got61128123094271330942840Ratregion
44991D12Got73271123434381934344089Ratregion
44992D12Got71270123426480534265074Ratregion
44993D12Got72148123398690533987050Ratregion
44994D12Got74134123227074732270880Ratregion
60755D12Wox16142123064184030641984Ratregion
44995D12Got69184123287169832871879Ratregion
60019D12Got53166122885873328858898Ratregion
60020D12Got54136122831037928310514Ratregion
60021D12Got56179122887680428876982Ratregion
60022D12Got59187122963181529632001Ratregion
60023D12Got60285122982214929822433Ratregion
60023D12Got60285122917864529178929Ratregion
60024D12Got62266123028938830289650Ratregion
60025D12Got65197123162495231625148Ratregion
60026D12Got66298123138422431384521Ratregion
60027D12Got75285124123494241235223Ratregion
60028D12Got8089124081830340818390Ratregion
60029D12Got81192124108627041086461Ratregion
60031D12Got99172123630854336308714Ratregion
60012D12Got105128122270586422705991Ratregion
60016D12Got43159122326210223262260Ratregion
61278D12Arb5123172352831723732Ratregion
629606D12Hmgc2262122500665625006918Ratregion
67290D8Arb9204122501335725013560Ratregion
67356D12Arb15202122496177724961978Ratregion
1630268D12Cebr1239123109317731093415Ratregion
1629328D12Got217284122492323124923509Ratregion
1629355D12Mco40123596431335964504Ratregion
1629355D12Mco40123594831235948510Ratregion
1629647D12Got220119122392872923928847Ratregion
1640906D12Got212221122805969628059916Ratregion
1632605D12Got211125122785009627850220Ratregion
1637896D12Uia3216122617696226177177Ratregion
1634514D12Got214178124075511340755290Ratregion
7192219Fzd9487122447576424476250Ratregion
7193095AA957504192122360902723609218Ratregion
8693216rs106542192123910951539109515Ratregion
7205918RH17921243123590604035906282Ratregion
7206280Ptpn11148124092294640923510Ratregion
720584210STS02221123590593635906156Ratregion
5035885PMC280674P1715123730379637304510Ratregion
5038888RH127390196123848412738484322Ratregion
5038936RH127418190123029984030300029Ratregion
5038976RH127441189122359709223597280Ratregion
7206382fj36f03.x10123251485532515719Ratregion
7206766ha30420123730136137302538Ratregion
5036330Gus-s235123020497630205210Ratregion
5036352Hsp25216122383951823839844Ratregion
5039228RH127586215122474352024743734Ratregion
5036825AU049323184123227073232270914Ratregion
5037007AU049899204122601952926019732Ratregion
5037065D12S2026337123960296439603300Ratregion
5035498AW533080180124078845740788636Ratregion
5035701WI-1509899122356109223561190Ratregion
5033885RH140486172123661381136613982Ratregion
5033931RH140659187122805684428057028Ratregion
5033941RH140698187123981100739811193Ratregion
5033987RH140921192122930050829300743Ratregion
5026010RH130563215123673757636737790Ratregion
5028621RH118296196123836998638370181Ratregion
7205796D5S1561E91123590543435905524Ratregion
7206126UniSTS:532167946124077989640780841Ratregion
7206190Eln141122502017125020961Ratregion
7206212Hspb1408122383965423840833Ratregion
5034029RH141085192123057089830571089Ratregion
5034101RH141366180123046480530464984Ratregion
5034155RH141576216122783351627833731Ratregion
5034159RH141592185123736573637365920Ratregion
5028833RH142503121123982635239826472Ratregion
5034199RH141742194123802176538021958Ratregion
5034249RH1419280122549352125493702Ratregion
5034337Ncf1165122897667528976990Ratregion
5034337Ncf1165122550437125504686Ratregion
5029061RH143368159122815543228155590Ratregion
5034339Fkbp6481122437684824377328Ratregion
5034383D16S505794123080311130803228Ratregion
5034402BE117132150122544065125440800Ratregion
5032014AU046360137122347359723473733Ratregion
5034666BF390887174123267837632678549Ratregion
5026638RH1329730122512785325128024Ratregion
5026664RH133068206122316175823161963Ratregion
5029387RH144598150124074848640748635Ratregion
5026898RH133958187124087773740878149Ratregion
5026902RH133976195123966363939663833Ratregion
5032211D84372133124095255140952683Ratregion
5035126AI548127209122465378324653991Ratregion
5027036RH134486198123742778937427985Ratregion
5029655AI711004185123046097730461161Ratregion
5032495D5Ertd355e248122510955025109797Ratregion
5035356AW529993150123972932439729473Ratregion
5029871BE097070160123158610231586261Ratregion
5029871BE097070160123157075331570912Ratregion
5027301AW544490124124026668040266803Ratregion
5027303AW049835110123969057139690680Ratregion
5027305AV006093134123053332630533459Ratregion
5027307AI957187130122367510123675230Ratregion
5035192BG381331154123145155931451712Ratregion
5035208BM390639203122394310623943308Ratregion
5030109BE098443174122381612023816293Ratregion
5030123BE098792203123703343337033635Ratregion
5030179BF395959124123740495637405079Ratregion
5025008C85851106122930791129308016Ratregion
5027595AI46224399122472177524721873Ratregion
5033069RH137475203123002409430024296Ratregion
5030445BE106487158123870896338709120Ratregion
5030479BF403268212123982372439823935Ratregion
5033235RH138082125122825284428252968Ratregion
5033235RH138082125122825266228252968Ratregion
5033301RH138330157123940043939400583Ratregion
5025306RH127813210122694507726945284Ratregion
5025422RH1282540122510941425109641Ratregion
8693404rs64151264122911360929113609Ratregion
5030615BE107127158122456688924567046Ratregion
5025546RH128738156122465663424656789Ratregion
5030821BE120393170123200212532002294Ratregion
5030825BE120455158123989143639891593Ratregion
5033617RH139480197122992594529926141Ratregion
5028257D5Mit118157123968714439687300Ratregion
5028259D5Mit27213123020497830205190Ratregion
5030945BF399653145123048925230489396Ratregion
5033783RH140105189123066790630668094Ratregion
5025864RH129983150124121124041211389Ratregion
5028452AA987064163123277305632773218Ratregion
5031079BE115872151122824920328249353Ratregion
5031143AA925036117123916158139161697Ratregion
5031165BE116737176122419322824193403Ratregion
5051837RH94687119123134466931344787Ratregion
5052071RH94823255123045005230450306Ratregion
5052075RH94825207124095253940952745Ratregion
5055147RH143632261123809823438098494Ratregion
5051170RH134480188123676115736761344Ratregion
5053695RH142798101123056624030566340Ratregion
5056311RH144305102122734127827341379Ratregion
5051537AU015798189122694499626945184Ratregion
5053745RH142826173123755664137556813Ratregion
5053831RH142876162122276421122764372Ratregion
5054003RH142974126123887833538878460Ratregion
5056877RH144632157123785137437851530Ratregion
5056941RH144669170122367416923674338Ratregion
5051835RH94685217122502126425021480Ratregion
5054195RH143085251122544264825442898Ratregion
5057094AI454805188124129027641290463Ratregion
5057524AW522797179122277843522778613Ratregion
5055321RH143734122123000533130005452Ratregion
5054439RH143225134122741401327414146Ratregion
5059396AW530578166123789097037891135Ratregion
5059512BE097146152122860487428605025Ratregion
5055597RH143892132123961251739612660Ratregion
5055615RH143903170123972986639730035Ratregion
5054907RH143493136123939195139392086Ratregion
5055031RH143566222122930372229303943Ratregion
5057906BI277291215122459076224590976Ratregion
5058000BF386435194123145727131457464Ratregion
5058592BE102132180123329857333298755Ratregion
5058666BE102291152123787755337877704Ratregion
5058690BE096988180123044132130441499Ratregion
5056395RH144353115123925549539255609Ratregion
5058712BE102361150122770570927705858Ratregion
5058760BF387056170122788517727885346Ratregion
5059566BE097301153122906628929066441Ratregion
5059566BE097301153122535926225359414Ratregion
5056977RH144689176123657204436572219Ratregion
5058056BF386509150122387260423872753Ratregion
5058858BF393753115123194782131947935Ratregion
5052573RH125644234123747129737471530Ratregion
5052777RH142267176122273247222732804Ratregion
5058924BF387255151123975838539758535Ratregion
5059022BF387385184123746392237464105Ratregion
5052815RH142289151122507035625070506Ratregion
5052877RH142325199122275053022750728Ratregion
5053073RH142438176122394147823941650Ratregion
5059878BI279065181123745206637452246Ratregion
5059892BF388151181124053640240536582Ratregion
5060032BF388305150123016260730162756Ratregion
5058324BF41930790123897738138977470Ratregion
5049856RH133721207122982511329825319Ratregion
5049856RH133721207122918160929181815Ratregion
5052309R75209169122825165328251821Ratregion
5053171RH142495102122793211527932216Ratregion
5053175RH142497109123070420630704314Ratregion
5053175RH142497109123035616930356277Ratregion
5053231RH142529112123022650130226612Ratregion
5058378BG37680094123246216032462253Ratregion
5059120BI278447163124049858640498746Ratregion
5059252BF387881158123048443230484589Ratregion
5057636BF392370170123786316437863333Ratregion
5057674BE101305210122367577023675994Ratregion
5057830BF386235218122769153127691749Ratregion
5050534RH134112168123802317238023339Ratregion
5050706RH134211220124055077840550997Ratregion
5053795RH142855128122800738128007508Ratregion
5049902RH133748184123113494631135129Ratregion
5050030RH133822180122376929423769473Ratregion
5050078RH133849206123845140838451613Ratregion
5050998RH134379214123664414436644357Ratregion
5051014RH134388193122358749923588243Ratregion
5053021RH142408193122381635523816547Ratregion
5051397AW554476125123848354438483668Ratregion
5051399AW22870094123856480638564899Ratregion
5051403AW21207994123074069630740789Ratregion
5054217RH143097179124022819540228373Ratregion
5053113RH142461223122348218923482411Ratregion
5054575RH143303219123827466438274882Ratregion
5054853RH143463195122991010529910299Ratregion
5051038RH134402192123049150730491698Ratregion
5041758RH129042197123052632930526525Ratregion
5041840RH129089153122353580323535955Ratregion
5043946RH130322189122368799523688183Ratregion
5044038RH130374192124116713541167326Ratregion
5044092RH130405184122356425323564436Ratregion
5043520RH130072150123021536330215512Ratregion
5043588RH130111182122345394823454129Ratregion
5043740RH130200196122993029329930488Ratregion
5044998RH130924195122367791923678113Ratregion
5045148RH131011183124070918540709367Ratregion
5045350RH131127213123982068939820908Ratregion
5045390RH131150198122367497223675169Ratregion
5045534RH131233196123663411536634310Ratregion
5041500RH128892212123845223038452441Ratregion
5041628RH128966181122993178229931962Ratregion
5043960RH130330167123968860039688766Ratregion
5044050RH130381196123070196630702161Ratregion
5044050RH130381196123035392930354124Ratregion
5045720RH131340211123790364437903854Ratregion
5045820RH131397206123135989631360101Ratregion
5044252RH130496189122434195224342140Ratregion
5047542RH132387210123930496439305173Ratregion
5045994RH131498201122926941029269610Ratregion
5047584RH132412182124127221241272393Ratregion
5047584RH132412182124114955041149731Ratregion
5048884RH133161208122431193324312140Ratregion
5045830RH131403181122992578629925966Ratregion
5049222RH133356196122513057325130766Ratregion
5045912RH131450194124046022740460420Ratregion
5048172RH132750204122270874322709133Ratregion
5047040RH132099186123832691138327096Ratregion
5047170RH132174220122358688723587200Ratregion
5039492RH127736213122394163223942172Ratregion
5039496RH127739195123767724137677435Ratregion
5041982RH129170158124022536340226002Ratregion
5042060RH1292150123765354237653738Ratregion
5047264RH132227181123776987337770053Ratregion
5048412RH132889186122376330623763491Ratregion
5042866RH1296920122265121122651410Ratregion
5041964RH129160197123651240136512598Ratregion
5042216RH129307198124062557340625770Ratregion
5040500RH128319191123916449139164681Ratregion
5040162RH128125209122431496624315174Ratregion
7192204Fzd10179122447546424475642Ratregion
5042616RH129542194124038193340382126Ratregion
5042714RH129601215123809576738095981Ratregion
5041048RH128633220124062510340625770Ratregion
5041094RH128659184124095575440955937Ratregion
5041176RH128706151123992249839922648Ratregion
5041176RH128706151123935238639352536Ratregion
5043680RH130165201123982159539821795Ratregion
5040586RH128368216122423360624233821Ratregion
5042942RH129737159122383946023839618Ratregion
5072604RH136945202123004582630046027Ratregion
5072734RH137022169123973085339731021Ratregion
5075082RH138388172123964169039641861Ratregion
5072086RH136643184123131968131319864Ratregion
5075452RH138602130122548632925486991Ratregion
5075482RH138619128122466842824668555Ratregion
5075594RH138684124123056349130563614Ratregion
5072420RH136839227123280774232807968Ratregion
5072488RH136879157122476264724762803Ratregion
5076014RH138929192123790857537908766Ratregion
5076326RH139111134123939195039392083Ratregion
5076376RH139139184122280280522802988Ratregion
5076558RH139246236122474352024743755Ratregion
5074698RH138167126123723762737237753Ratregion
5076630RH139287223122389184223892064Ratregion
5076680RH139316170123802257638022745Ratregion
5075534RH138649165123050094530501109Ratregion
5075888RH138855217122897629728976513Ratregion
5075888RH138855217122550484825505064Ratregion
5074846RH138252196123277419132774388Ratregion
5076124RH138993214123950706939507282Ratregion
5075656RH138720122123046503730465158Ratregion
5079492RH141029193123883967938839871Ratregion
5076702RH139329123124052875140529216Ratregion
5079586RH141086211124022076740220977Ratregion
5077120RH139572218123657090336571120Ratregion
5077140RH139585207122346960423469810Ratregion
5077368RH139716192123878656338786754Ratregion
5076398RH139152186122522537425225559Ratregion
5076446RH139180139123866070338660841Ratregion
5077942RH140050185122717952627179710Ratregion
5078542RH140404143123657090336571045Ratregion
5080034RH141345206122815715328157358Ratregion
5078298RH140259199122899566428995862Ratregion
5078298RH140259199122528863525288833Ratregion
5078598RH14043691123897738638977476Ratregion
5079140RH140758133122472254324722929Ratregion
5079176RH140780182123809588238096063Ratregion
5070646RH134623186122468050824680693Ratregion
5073154RH137270199122381634823816546Ratregion
5071224RH134959188122434850324348690Ratregion
5073654RH137562247122523664225236888Ratregion
5072872RH137103185123856472838564912Ratregion
5072874RH137104201123053328330533483Ratregion
5071652RH135206191123012527530125465Ratregion
5073316RH137366190123930805539308244Ratregion
5073340RH137380150123745305037453199Ratregion
5071830RH135309202122421868724218888Ratregion
5071904RH135352195123657633936576533Ratregion
5071524RH135132182123076050330761748Ratregion
5071528RH135134220122553125025531469Ratregion
5073564RH137509217124027410140274317Ratregion
5072234RH136731142122408763124087772Ratregion
5071572RH135160211123002922630029436Ratregion
5071600RH135176180122353241023532589Ratregion
5071766RH135272186124117965741179842Ratregion
5061782AW533444153123291624332916395Ratregion
5064982BE108813170123752321337523382Ratregion
5064992BE108855163122723232827232490Ratregion
5065118BF405946194123076288030763073Ratregion
5066672AU048219113122849413828494250Ratregion
5066976AU048039163122829599428296156Ratregion
5067020AU048013176122880200528802180Ratregion
5067026AU048009127123402933034029456Ratregion
5067328AU047820202123195882431959025Ratregion
5067440AU047743166122335924723359412Ratregion
5067446AU047739171122567061825670782Ratregion
5067470AU047724238123933116539331402Ratregion
5067578AU047661128123288447732884604Ratregion
5067606AU047644180122646115326461332Ratregion
5067608AU047633193122646115326461345Ratregion
5067610AU047642165123288447132884635Ratregion
5067688AU047595111122818239828182508Ratregion
5068292AU047234131123011471430114838Ratregion
5068616AU047037210122421390124214110Ratregion
5068766AU046945184123474710134747271Ratregion
5068860AU046881284123983150439831782Ratregion
5069036AU046764158122990765029907807Ratregion
5070281RH94577178122265105522651232Ratregion
5069284AU046599190122509174325091927Ratregion
5061906BI294189190122999363729993826Ratregion
5063564BI289921203123772763037727832Ratregion
5060418BE110007168123710531037105477Ratregion
5060600BE110558180122824364828243827Ratregion
5060624BE110694159123995891639959073Ratregion
5062286BF403047149124055777740557925Ratregion
5062302BI288626185122514874225148926Ratregion
5063790AW535181183122902868629028868Ratregion
5063790AW535181183122532165725321839Ratregion
5063954AW535897169122825395828254129Ratregion
5063976BE120355168122345238423452552Ratregion
5065484BF412251116122784289327843008Ratregion
5065682BF41274694122333280223332895Ratregion
5060954BF389547143123388233433882476Ratregion
5062594BE106902162123930243339302594Ratregion
5064398BF411168226122338129123381516Ratregion
5065922BE116124212123280640132806612Ratregion
5062016BI294736218123816176938161986Ratregion
5062052BI294823189124081004640810234Ratregion
5062110BF397463207122469651124696984Ratregion
5063774AW535146159122456588124566039Ratregion
5065400AA95750490122360896723609056Ratregion
5065460BF412122151123966037139660521Ratregion
5060602BE110564160123736803537368194Ratregion
5062190BF397544204123849871438498917Ratregion
5064116BE120626157122819204028192196Ratregion
5065492BI303226201123133218531332385Ratregion
5065702BF406235157123253392232534078Ratregion
5064324AW529994209122458871224588920Ratregion
5064386BF399187219123145718831457406Ratregion
5065896AA964673117122431293824313054Ratregion
5065990BE116442175123929834739298521Ratregion
5066040AA925378207123278046132780667Ratregion
5061024BF389756218122386276123862978Ratregion
5061170BE099159165122280450522804669Ratregion
5064686BE108318191122801102528011215Ratregion
5066402AU048378133122469022824690360Ratregion
5061348BF396285123123884327638843398Ratregion
5061466BE105245151123160536731605517Ratregion
5063204BF410495116123382980933829924Ratregion
5066450AU048349132123950092739501058Ratregion
5066494AU048323126123007643130076556Ratregion
5066570AU048279137122639182226391958Ratregion
5084352AA945300202124062825540628456Ratregion
5086066AW529466165122447664824476812Ratregion
5086363AA874832191123924246239242652Ratregion
5086377BQ205524202122639442026394621Ratregion
5087114AI511394150122512821625128365Ratregion
5082929BF390440164123160462831604791Ratregion
5082979BF390551160122416163224161791Ratregion
5087446PMC180925P1753122400339224004144Ratregion
5089147AU048982137122765880127658937Ratregion
5088269AU048467127123405152134051647Ratregion
5088275AU048471145122979806029798204Ratregion
5088275AU048471145122915420229154346Ratregion
5089283AU049064185122955131829551502Ratregion
5089401AU049134152124129139641291554Ratregion
5089401AU049134152124121363241213783Ratregion
5083337BF417900202122381001023810211Ratregion
5083619BI276461171123878610538786279Ratregion
5088299AU048487168122384549423845661Ratregion
5088299AU048487168122384474023845661Ratregion
5088305AU048490237123667652736676763Ratregion
5090807AU049974208122322019923220406Ratregion
5083691BG375003121123193654631936666Ratregion
5088655AU048698165122521852525219371Ratregion
5088655AU048698165122521852525218688Ratregion
5088827AU048794232122420767424207905Ratregion
5089587AU04924498123273449132734588Ratregion
5089613AU049259269123371743733717705Ratregion
5089619AU049263194122714133127141524Ratregion
5089627AU049267158123051488330515040Ratregion
5090467AU049767193122628525326285445Ratregion
5090515AU049797289122669352726693815Ratregion
5081457Fzd9269122447551524475783Ratregion
5081461UniSTS:230793351122506898225069332Ratregion
5090105AU049553203123740837937408581Ratregion
5087171BQ207717197123991058239910778Ratregion
5082125BF409796221123950879039509010Ratregion
5088143Baz1b121122453671224536832Ratregion
5082163BI280199151122267553922675689Ratregion
5082331BI274506161122498919824989358Ratregion
5082421BE119354170122939476229394931Ratregion
5082437BI274753205122548759325487797Ratregion
5088259AU048461162122589837425898535Ratregion
5085092AW533191151123102240031022550Ratregion
5085345BE100612165122559820625598377Ratregion
5090417AU049738129122837937628379504Ratregion
5090531AU049807198124061345540613652Ratregion
5088703AU04872683123431762534317707Ratregion
5088717AU048735193123316129033161482Ratregion
5085387BM390241201123758299337583193Ratregion
5085537BE097726203122947777029477972Ratregion
5085760BM390895181123806245138062631Ratregion
5090141AU049574241123604497836045204Ratregion
5080714RH141739183123277295032773132Ratregion
5080924RH141862199123736762137367819Ratregion
5081258RH142057192122356839423568585Ratregion
5084786AI171447119123066810230668220Ratregion
5083203BI275304166123764857437648739Ratregion
5083365AA818673142123017795330178246Ratregion
5086572BE114476157122811644328116599Ratregion
5081414AI502108184123973189939732082Ratregion
5081459UniSTS:230791255122447552924475783Ratregion
5086787BE107332214122356005123560264Ratregion
5086845AI008308155122382776023827909Ratregion
5085709BE101960176122386564823865823Ratregion
5085736BF388086155123798605937986213Ratregion
5085800BF388132200122453097724531176Ratregion
5085828BF388170183124075313240753314Ratregion
5086034BM383880189122648761626487804Ratregion
5503072Sbds161122992150829922592Ratregion
5502989D5Dcr13141122489137424891514Ratregion
5503867SSC3D06197122381760423817800Ratregion
5507648Eln698122499615724996854Ratregion
5504819ha2178866122743937427440239Ratregion
5504869ha27170123666495636666392Ratregion
5505879UniSTS:49598892123175917731759268Ratregion
5505919Mmp1795123071773230717826Ratregion
5506193UniSTS:498764430123162416631624595Ratregion
5506270GDB:458569784122359004723590130Ratregion
5506288STS-Z413780123201443432014968Ratregion
5506729G44856274123976561139765884Ratregion
5507319G48114154122507031325070466Ratregion
5499595Wbscr1215122510744925108107Ratregion
5499633MARC_5817-5818:991939742:3300123318262533182924Ratregion
5499605MARC_2373-2374:991932707:1334124026659240267721Ratregion
5499597Wbscr14147122459122324592282Ratregion
5499663MARC_6945-6946:992007577:2582122399688323997464Ratregion
5499837UniSTS:234929717123829144638292162Ratregion
5499899UniSTS:235344206122267571922675924Ratregion
5502733RSRC2168123829144138291608Ratregion
5503095ASL204123017638030176843Ratregion
5500713RH911941560122424164624243205Ratregion
5500847G15902192123960005239600243Ratregion
5500408GDB:45513084123883375938833842Ratregion
5500875D5S5031483122442905024430532Ratregion
5501922MARC_17487-17488:1030377680:10124030068540302210Ratregion
5502313RH1244050123884435338844563Ratregion
5502345RH124557175123747129037471464Ratregion
5502609RH12552482122694600026946081Ratregion
5502875Fzd10838123175926231760101Ratregion
5502475RH125009259122692511426925372Ratregion
11529999rs197969186122392065623920656Ratregion
11529998rs196994347122407860824078608Ratregion
11530000rs197046678122439438324394383Ratregion
Position Markers

Flank 1: (D12Wox12)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01222,650,721 - 22,650,922NCBI
Rnor_5.01224,663,002 - 24,663,203UniSTS
RGSC_v3.41220,932,555 - 20,932,757RGD
RGSC_v3.41220,932,556 - 20,932,757UniSTS
RGSC_v3.11220,922,167 - 20,922,369RGD
Celera1221,386,649 - 21,386,850UniSTS
RH 3.4 Map12277.5UniSTS
RH 3.4 Map12277.5RGD
RH 2.0 Map12197.1RGD
Cytogenetic Map12q11-q12UniSTS
Peak: (D12Wox12)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01222,650,721 - 22,650,922NCBI
Rnor_5.01224,663,002 - 24,663,203UniSTS
RGSC_v3.41220,932,555 - 20,932,757RGD
RGSC_v3.41220,932,556 - 20,932,757UniSTS
RGSC_v3.11220,922,167 - 20,922,369RGD
Celera1221,386,649 - 21,386,850UniSTS
RH 3.4 Map12277.5UniSTS
RH 3.4 Map12277.5RGD
RH 2.0 Map12197.1RGD
Cytogenetic Map12q11-q12UniSTS
Flank 2: (D12Arb6)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01241,213,448 - 41,213,801NCBI
Rnor_6.01241,291,378 - 41,291,738NCBI
Rnor_5.01243,150,549 - 43,150,909UniSTS
RGSC_v3.41236,894,447 - 36,894,750UniSTS
RGSC_v3.41236,818,781 - 36,819,134UniSTS
RGSC_v3.41236,894,446 - 36,894,750RGD
RGSC_v3.41236,818,780 - 36,819,134RGD
RGSC_v3.11236,757,835 - 36,758,138RGD
Celera1237,422,909 - 37,423,212UniSTS
Celera1237,346,026 - 37,346,376UniSTS
RH 3.4 Map12618.9UniSTS
RH 3.4 Map12618.9RGD
RH 2.0 Map12466.8RGD
SHRSP x BN Map1244.35RGD
Cytogenetic Map12 RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12122650917Rat
10450854Stl34Serum triglyceride level QTL 343.50.05blood LDL triglyceride amount (VT:0010699)blood lipoprotein triglyceride level (CMO:0002685)12122853017Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12123035872Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123758197Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12130749723Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12136919844Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12138334225Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)1215081045150810Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1215081045150810Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)1215081045150810Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1215081045150810Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1215081045150810Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1215081045150810Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)1215081045150810Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)1249257845492578Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12247568747475687Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12251344247513442Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12251344247513442Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12421005149210051Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12895459327911196Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6922362652716770Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12922362652716770Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12922362652716770Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12922362652716770Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12922362652716770Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12922362652716770Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12922363052716770Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12978983452716770Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121017588931975590Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)121025689031723732Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)121176499537522089Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121312721127285590Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121312721131723688Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121312721150320041Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121441977552716770Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121502198652716770Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121571460935964508Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121571460941291738Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121590890052716770Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121590890052716770Rat
61443Btemp2Thermal response to stress QTL 23.30.000094body temperature trait (VT:0005535)core body temperature (CMO:0001036)121711477023839390Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121718558044098244Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121796086538409001Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121834247752716770Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121834247752716770Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121872904352716770Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121875259352716770Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101875259352716770Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)122265070227190240Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)122265070245946937Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)122265070248598906Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)122265070252716770Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)122265072141291738Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)122287629743799153Rat
631521Pia12Pristane induced arthritis QTL 128.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)122324124626710128Rat
11530002Bss119Bone structure and strength QTL 11916.390.00000000000000004lumbar vertebra area (VT:0010570)lumbar vertebra area (CMO:0001688)122392065624394383Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122490659052716770Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122609884552716770Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122719024042196641Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)122728547336161779Rat
8693658Alc33Alcohol consumption QTL 332.10.68drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122911360949560679Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122911360950757185Rat
1556747Calcic1Intracellular calcium level QTL 13.6platelet calcium amount (VT:0010500)platelet intracellular calcium level (CMO:0000922)123172356547433663Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)123172356551955754Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)123172356552716770Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)123172368845946802Rat
631829Alc6Alcohol consumption QTL 64.7consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)123228978243305579Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123752188451955754Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Cia25

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_disease involved in regulating mean arthritis scores and severity during mid-to-late disease course 1285224
qtl_gene whole genome analysis using PGMapper revealed Ncf1 as RA associated gene and Ncf1 as RA associated polymorphism either in coding or regulatory region 2300074
qtl_gene 471 known and 117 novel genes were found in an analysis based on PubMed and OMIM data 2307198
qtl_general female-specific arthritis-severity recessive locus in which maximum LOD was observed on day 28 1285224