Cia25 QTL Report (Rattus norvegicus)

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General

QTL: Cia25 (Collagen induced arthritis QTL 25) Rattus norvegicus

Symbol:

Cia25

Name:

Collagen induced arthritis QTL 25

Trait:

joint integrity trait (VT:0010548)

Measurement Type:

joint inflammation composite score (CMO:0000919)

LOD Score:

4.7

P Value:

Not Available

Variance:

Not Available

Inheritance Type:

recessive

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	12	22,650,721 - 41,291,738	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	12	24,663,002 - 43,150,909	RGD	Rnor5.0
RGSC_v3.4	12	20,932,555 - 36,894,750	RGD	RGSC3.4
RGSC_v3.1	12	20,922,167 - 36,758,138	RGD

Cross Type:

intercross

Strains Crossed:

DA/BklArbN ACI/SegHsd

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation (Toggle Annotation Detail/Summary View)

Candidate Gene Status

Ncf1 is a candidate Gene for Cia25

Disease Annotations

RGD Manual Annotations

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Experimental Arthritis		IDA		1285224		RGD

Phenotype Annotations

Mammalian Phenotype

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
joint swelling		QTM		1285224		RGD

Experimental Data Annotations

Clinical Measurement

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
joint inflammation composite score		IDA		1285224		RGD

Experimental Condition

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Freund's incomplete adjuvant		IDA		1285224		RGD
type II collagen		IDA		1285224		RGD

Measurement Method

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
in vivo visual assessment		IDA		1285224		RGD

Rat Strain

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ACI/SegHsd		IEA		1285224		RGD
DA/BklArbN		IEA		1285224		RGD

Vertebrate Trait

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
joint integrity trait		IDA		1285224		RGD

Disease Annotations

Experimental Arthritis (IDA)

Phenotype Annotations

Mammalian Phenotype

joint swelling (QTM)

Experimental Data Annotations

Clinical Measurement

joint inflammation composite score (IDA)

Experimental Condition

	Freund's incomplete adjuvant (IDA)
	type II collagen (IDA)

Measurement Method

in vivo visual assessment (IDA)

Rat Strain

	ACI/SegHsd (IEA)
	DA/BklArbN (IEA)

Vertebrate Trait

joint integrity trait (IDA)

References - curated

1.	Brenner M, etal., Ann Rheum Dis. 2007 Feb 28;.
2.	Joe B Physiol Genomics. 2006 Oct 3;27(1):1-11. Epub 2006 Jun 27.
3.	Meng HC,etal., Arthritis Rheum. 2004 Aug;50(8):2695-705.
4.	Xiong Q, etal., Crit Rev Immunol. 2008;28(2):127-57.
5.	Xiong Q, etal., J Immunol. 2008 Jul 15;181(2):859-64.

Related QTLs

Related QTL	Description	Reference
Cia12	maps to same region	RGD:1285224

Region

Genes in Region (Rnor_6.0)

The following Genes overlap with this region.

RGD ID	Symbol	Name	Chr	Start	Stop	Species
3249	Serpine1	serpin family E member 1	12	22641104	22651482	Rat
1305911	Ap1s1	adaptor related protein complex 1 subunit sigma 1	12	22665128	22676079	Rat
69399	Vgf	VGF nerve growth factor inducible	12	22677302	22680630	Rat
7594601	LOC102551204	uncharacterized LOC102551204	12	22680636	22685476	Rat
11505017	LOC108352433	uncharacterized LOC108352433	12	22684186	22698570	Rat
1592588	Mogat3	monoacylglycerol O-acyltransferase 3	12	22708622	22710787	Rat
631339	Plod3	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	12	22716421	22726982	Rat
4888576	Mir702	microRNA 702	12	22721846	22721952	Rat
2322870	Znhit1	zinc finger, HIT-type containing 1	12	22726643	22732917	Rat
1310678	Cldn15	claudin 15	12	22738198	22750392	Rat
1306668	Fis1	fission, mitochondrial 1	12	22750485	22765324	Rat
6496734	LOC100910802	uncharacterized LOC100910802	12	22784233	22799362	Rat
1305370	Ift22	intraflagellar transport 22	12	22804384	22811036	Rat
1591401	Col26a1	collagen type XXVI alpha 1 chain	12	22834866	22980603	Rat
1561258	Myl10	myosin light chain 10	12	23011817	23075558	Rat
620618	Cux1	cut-like homeobox 1	12	23150886	23470095	Rat
69284	Sh2b2	SH2B adaptor protein 2	12	23471477	23501043	Rat
1595708	Prkrip1	PRKR interacting protein 1	12	23514987	23533278	Rat
1310213	Orai2	ORAI calcium release-activated calcium modulator 2	12	23544483	23564602	Rat
1308608	Alkbh4	alkB homolog 4, lysine demethylase	12	23568204	23574133	Rat
1359442	Lrwd1	leucine-rich repeats and WD repeat domain containing 1	12	23574234	23587262	Rat
1310198	Polr2j	RNA polymerase II subunit J	12	23587222	23592774	Rat
1565457	Rasa4	RAS p21 protein activator 4	12	23596989	23624386	Rat
1598237	Upk3bl1	uroplakin 3B like 1	12	23654996	23661009	Rat
1309615	Upk3b	uroplakin 3B	12	23676169	23682395	Rat
1561790	Dtx2	deltex E3 ubiquitin ligase 2	12	23687958	23727594	Rat
620606	Zp3	zona pellucida glycoprotein 3	12	23735225	23752734	Rat
1306970	Ssc4d	scavenger receptor cysteine rich family member with 4 domains	12	23752823	23769466	Rat
11459746	LOC108352434	uncharacterized LOC108352434	12	23755268	23757561	Rat
62002	Ywhag	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma	12	23789547	23817884	Rat
61306	Hspb1	heat shock protein family B (small) member 1	12	23839390	23841051	Rat
1587868	Srrm3	serine/arginine repetitive matrix 3	12	23855400	23925793	Rat
11499585	LOC108352435	uncharacterized LOC108352435	12	23928349	23938612	Rat
619719	Mdh2	malate dehydrogenase 2	12	23941451	23954406	Rat
1305845	Styxl1	serine/threonine/tyrosine interacting-like 1	12	23954563	23987155	Rat
1311474	Tmem120a	transmembrane protein 120A	12	23989596	23998257	Rat
68335	Por	cytochrome p450 oxidoreductase	12	23998411	24017063	Rat
1308231	Rhbdd2	rhomboid domain containing 2	12	24091132	24102081	Rat
1310245	Ccl24	C-C motif chemokine ligand 24	12	24131529	24152626	Rat
1587817	Ccl26	C-C motif chemokine ligand 26	12	24157182	24161870	Rat
11442335	LOC108352436	uncharacterized LOC108352436	12	24162841	24166326	Rat
1583828	LOC363903	similar to ribosomal protein S13	12	24172840	24173294	Rat
620305	Hip1	huntingtin interacting protein 1	12	24180795	24315373	Rat
7563147	LOC102548966	uncharacterized LOC102548966	12	24314066	24316679	Rat
620680	Pom121	POM121 transmembrane nucleoporin	12	24316575	24341943	Rat
9465680	LOC103691295	uncharacterized LOC103691295	12	24316583	24319209	Rat
1309268	Nsun5	NOP2/Sun RNA methyltransferase 5	12	24341940	24346900	Rat
631346	Trim50	tripartite motif-containing 50	12	24348426	24365467	Rat
1308926	Fkbp6	FKBP prolyl isomerase 6	12	24365941	24438088	Rat
628817	Fzd9	frizzled class receptor 9	12	24473981	24476295	Rat
1597089	Baz1b	bromodomain adjacent to zinc finger domain, 1B	12	24478882	24536851	Rat
1597090	Bcl7b	BAF chromatin remodeling complex subunit BCL7B	12	24543748	24557093	Rat
1595038	Tbl2	transducin (beta)-like 2	12	24565843	24578855	Rat
620400	Mlxipl	MLX interacting protein-like	12	24590645	24619639	Rat
1587769	Vps37d	VPS37D subunit of ESCRT-I	12	24651342	24656793	Rat
1595783	Dnajc30	DnaJ heat shock protein family (Hsp40) member C30	12	24668398	24669464	Rat
1589742	Bud23	BUD23, rRNA methyltransferase and ribosome maturation factor	12	24669626	24680833	Rat
69430	Stx1a	syntaxin 1A	12	24682050	24710002	Rat
1585479	Abhd11-as1	ABHD11 antisense RNA 1 (tail to tail)	12	24721190	24722177	Rat
1304681	Abhd11	abhydrolase domain containing 11	12	24722277	24725760	Rat
1585449	LOC686150	similar to actin related protein 2/3 complex, subunit 5	12	24744117	24745066	Rat
1307932	Cldn4	claudin 4	12	24761210	24763008	Rat
1588881	Mettl27	methyltransferase like 27	12	24767351	24775891	Rat
9242288	LOC103691506	claudin-4-like	12	24785637	24786293	Rat
1561903	Tmem270	transmembrane protein 270	12	24803204	24808287	Rat
7520086	LOC102553484	uncharacterized LOC102553484	12	24973679	24980976	Rat
67394	Eln	elastin	12	24978478	25021864	Rat
62055	Limk1	LIM domain kinase 1	12	25036630	25070538	Rat
11405154	LOC108352484	40S ribosomal protein S14 pseudogene	12	25078541	25079054	Rat
1359222	Eif4h	eukaryotic translation initiation factor 4H	12	25093119	25109805	Rat
631397	Lat2	linker for activation of T cells family, member 2	12	25114099	25128381	Rat
621198	Rfc2	replication factor C subunit 2	12	25130375	25143480	Rat
7689818	LOC102553558	uncharacterized LOC102553558	12	25148381	25150352	Rat
1583827	LOC363906	hypothetical LOC363906	12	25156737	25157396	Rat
1563240	Ervfrd-1	endogenous retrovirus group FRD member 1, envelope	12	25161130	25168182	Rat
62019	Clip2	CAP-GLY domain containing linker protein 2	12	25172957	25236935	Rat
620856	Gtf2ird1	GTF2I repeat domain containing 1	12	25264052	25370947	Rat
11424350	LOC108352437	uncharacterized LOC108352437	12	25372497	25375302	Rat
9271754	LOC103693636	uncharacterized LOC103693636	12	25372497	25377457	Rat
727961	Gtf2i	general transcription factor II I	12	25410804	25487970	Rat
9311981	LOC103691302	uncharacterized LOC103691302	12	25487921	25499152	Rat
61307	Ncf1	neutrophil cytosolic factor 1	12	25497104	25506300	Rat
1307435	Gtf2ird2	GTF2I repeat domain containing 2	12	25509059	25555554	Rat
1307558	Rcc1l	RCC1 like	12	25561871	25592337	Rat
1304672	Castor2	cytosolic arginine sensor for mTORC1 subunit 2	12	25595800	25638806	Rat
7587101	LOC102553721	uncharacterized LOC102553721	12	25648662	25654744	Rat
6488308	LOC100912194	40S ribosomal protein SA-like	12	25815383	25821742	Rat
7586081	LOC102555610	40S ribosomal protein S2-like	12	26209368	26214894	Rat
7572143	LOC102553887	uncharacterized LOC102553887	12	26337948	26351461	Rat
11435442	LOC108352438	uncharacterized LOC108352438	12	26739445	26827888	Rat
7489014	Mir6322	microRNA 6322	12	26825060	26825178	Rat
1583826	LOC363907	similar to Purine nucleoside phosphorylase (Inosine phosphorylase) (PNP)	12	26943672	26947876	Rat
7549056	LOC102554260	uncharacterized LOC102554260	12	27091718	27100401	Rat
2323959	Auts2	activator of transcription and developmental regulator AUTS2	12	27155362	28252752	Rat
9170642	LOC103691310	autism susceptibility gene 2 protein-like	12	27155364	27647641	Rat
9402189	LOC103691309	uncharacterized LOC103691309	12	27421622	27424633	Rat
11500192	LOC108352498	uncharacterized LOC108352498	12	27660256	27667957	Rat
9310086	LOC103693638	gametogenetin-like	12	28155196	28160152	Rat
1563452	Galnt17	polypeptide N-acetylgalactosaminyltransferase 17	12	28381879	29268457	Rat
7559672	LOC102554701	zinc finger protein AEBP2-like	12	28469253	28477633	Rat
9271205	LOC103691316	uncharacterized LOC103691316	12	28843063	28844825	Rat
6487394	LOC100912379	neutrophil cytosol factor 1-like	12	28976528	28978633	Rat
6488068	LOC100912262	general transcription factor II-I repeat domain-containing protein 1-like	12	29012229	29080026	Rat
9339716	LOC103690026	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase-like	12	29187368	29231035	Rat
7684404	LOC102550645	uncharacterized LOC102550645	12	29289020	29294566	Rat
1305843	Caln1	calneuron 1	12	29307117	29796996	Rat
9451108	LOC103691320	uncharacterized LOC103691320	12	29383387	29384947	Rat
11482332	LOC108352439	40S ribosomal protein S15a pseudogene	12	29627149	29627592	Rat
1310420	Tyw1	tRNA-yW synthesizing protein 1 homolog	12	29824990	29919240	Rat
9443604	LOC103691321	interferon-induced transmembrane protein 1 pseudogene	12	29896280	29898079	Rat
1311043	Sbds	SBDS, ribosome maturation factor	12	29921443	29930602	Rat
1303319	Tmem248	transmembrane protein 248	12	29931728	29958050	Rat
1307295	Rabgef1	RAB guanine nucleotide exchange factor 1	12	29960132	30004727	Rat
1582914	Kctd7	potassium channel tetramerization domain containing 7	12	30024080	30033357	Rat
1308473	Tpst1	tyrosylprotein sulfotransferase 1	12	30045753	30112377	Rat
620753	Crcp	CGRP receptor component	12	30125237	30160857	Rat
9192914	LOC103691322	uncharacterized LOC103691322	12	30136840	30139887	Rat
619974	Asl	argininosuccinate lyase	12	30160922	30178348	Rat
1598198	LOC501835	similar to 40S ribosomal protein S9	12	30193221	30194563	Rat
2772	Gusb	glucuronidase, beta	12	30202066	30215583	Rat
1303249	Vkorc1l1	vitamin K epoxide reductase complex, subunit 1-like 1	12	30218825	30268990	Rat
1560258	Nupr2	nuclear protein 2, transcriptional regulator	12	30300936	30304041	Rat
1559988	Zbed5	zinc finger, BED-type containing 5	12	30308469	30314520	Rat
11371096	LOC108352485	MLV-related proviral Env polyprotein-like	12	30322105	30324506	Rat
11438813	LOC108352486	heterogeneous nuclear ribonucleoprotein Q-like	12	30324857	30338434	Rat
9474710	LOC103693639	heterogeneous nuclear ribonucleoprotein Q pseudogene	12	30334301	30335350	Rat
1311541	Mmp17	matrix metallopeptidase 17	12	30353874	30356526	Rat
9342443	LOC103693640	MLV-related proviral Env polyprotein-like	12	30425332	30427226	Rat
6496638	LOC100910788	coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial-like	12	30443343	30446075	Rat
3325	Phkg1	phosphorylase kinase catalytic subunit gamma 1	12	30450431	30464314	Rat
1563253	Sumf2	sulfatase modifying factor 2	12	30465025	30490683	Rat
1304763	Cct6a	chaperonin containing TCP1 subunit 6A	12	30491584	30501813	Rat
1308764	Psph	phosphoserine phosphatase	12	30514128	30526551	Rat
1566421	Nipsnap2	nipsnap homolog 2	12	30527540	30566090	Rat
1307650	Mrps17	mitochondrial ribosomal protein S17	12	30570386	30573670	Rat
1596186	Septin14	septin 14	12	30600162	30623173	Rat
9221590	LOC103691323	heterogeneous nuclear ribonucleoprotein Q pseudogene	12	30624209	30626524	Rat
11384356	LOC108352487	heterogeneous nuclear ribonucleoprotein Q pseudogene	12	30625454	30648708	Rat
9235993	LOC103691507	zinc finger protein 471-like	12	30626297	30641417	Rat
7720926	LOC102550116	zinc finger protein with KRAB and SCAN domains 7-like	12	30641424	30647457	Rat
11492414	LOC108352440	40S ribosomal protein S25 pseudogene	12	30649668	30650107	Rat
2324824	Zfp11	zinc finger protein 11	12	30655245	30668370	Rat
1311541	Mmp17	matrix metallopeptidase 17	12	30701900	30728683	Rat
1305004	Sfswap	splicing factor SWAP	12	30740563	30811015	Rat
7689144	LOC102555340	uncharacterized LOC102555340	12	30945912	30954007	Rat
1594795	Adgrd1	adhesion G protein-coupled receptor D1	12	31134806	31249594	Rat
1594781	LOC689271	similar to ATP synthase, H+ transporting, mitochondrial Fo complex, subunit f, isoform 2	12	31258129	31258546	Rat
620367	Ran	RAN, member RAS oncogene family	12	31319556	31324105	Rat
2558	Stx2	syntaxin 2	12	31324203	31360249	Rat
708533	Rimbp2	RIMS binding protein 2	12	31393229	31605567	Rat
1306980	Piwil1	piwi-like RNA-mediated gene silencing 1	12	31608641	31629961	Rat
11518793	LOC108352441	uncharacterized LOC108352441	12	31630073	31633904	Rat
1583825	Fzd10	frizzled class receptor 10	12	31757407	31760604	Rat
11406627	LOC108352501	40S ribosomal protein S20-like	12	31805068	31805515	Rat
735062	Tmem132d	transmembrane protein 132D	12	31934343	32607768	Rat
1304896	Glt1d1	glycosyltransferase 1 domain containing 1	12	32666664	32749617	Rat
708469	Slc15a4	solute carrier family 15 member 4	12	32753824	32773277	Rat
1583824	Tmem132c	transmembrane protein 132C	12	32806372	33130746	Rat
11472079	LOC108352443	uncharacterized LOC108352443	12	32827602	32837733	Rat
11355720	LOC108352442	uncharacterized LOC108352442	12	32903385	32919782	Rat
7507387	LOC102556456	transmembrane protein 254-like	12	33092525	33095657	Rat
1559821	RGD1559821	similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	12	33182394	33183048	Rat
9386528	LOC103691509	60S ribosomal protein L7-like	12	33250305	33288256	Rat
11457842	LOC108352444	uncharacterized LOC108352444	12	33307688	33308604	Rat
9188281	LOC103691337	uncharacterized LOC103691337	12	33352673	33357264	Rat
11363226	LOC108352445	uncharacterized LOC108352445	12	33687467	33694713	Rat
2324513	LOC100362541	39S ribosomal protein L23, mitochondrial-like	12	33860543	33860971	Rat
7668786	LOC102549552	uncharacterized LOC102549552	12	33882182	33884539	Rat
9390395	LOC103691343	uncharacterized LOC103691343	12	33887856	33896540	Rat
11405284	LOC108352488	uncharacterized LOC108352488	12	33921054	33975355	Rat
1592278	Frg1l1	FSHD region gene 1-like 1	12	34003856	34004722	Rat
11493793	LOC108352502	uncharacterized LOC108352502	12	34225801	34232672	Rat
1333968	Olr1863-ps	olfactory receptor pseudogene 1863	12	34799758	34800396	Rat
11476624	LOC108352489	Y-linked testis-specific protein 1-like	12	34815109	34817152	Rat
1593402	LOC690669	similar to Spindlin-like protein 2 (SPIN-2)	12	35074816	35075519	Rat
7634124	LOC102550309	uncharacterized LOC102550309	12	35100017	35105553	Rat
7709136	LOC102550582	uncharacterized LOC102550582	12	35561973	35567921	Rat
6492489	LOC100911540	guanine nucleotide-binding protein subunit beta-2-like 1-like	12	35905362	35906429	Rat
1566191	Tmem132b	transmembrane protein 132B	12	35969718	36398233	Rat
1334044	Olr1822-ps	olfactory receptor pseudogene 1822	12	36013570	36014197	Rat
6491226	Zfp664	zinc finger protein 664	12	36201327	36203396	Rat
708522	Aacs	acetoacetyl-CoA synthetase	12	36512393	36555694	Rat
1561711	Bri3bp	Bri3 binding protein	12	36576018	36587839	Rat
1306837	Dhx37	DEAH-box helicase 37	12	36594058	36614165	Rat
11517466	Trnaa-ugc3	transfer RNA alanine (anticodon UGC) 3	12	36619738	36619809	Rat
11440418	Trnad-guc4	transfer RNA aspartic acid (anticodon GUC) 4	12	36620338	36620409	Rat
11367381	Trnaf-gaa4	transfer RNA phenylalanine (anticodon GAA) 4	12	36623201	36623273	Rat
11425977	Trnad-guc5	transfer RNA aspartic acid (anticodon GUC) 5	12	36623656	36623727	Rat
11373727	Trnaa-ugc4	transfer RNA alanine (anticodon UGC) 4	12	36624973	36625044	Rat
621244	Ubc	ubiquitin C	12	36638457	36642734	Rat
2302	Scarb1	scavenger receptor class B, member 1	12	36694952	36761445	Rat
9379917	LOC103691346	uncharacterized LOC103691346	12	36835455	36838332	Rat
7519457	LOC102555730	uncharacterized LOC102555730	12	36843259	36844420	Rat
1310293	Ncor2	nuclear receptor co-repressor 2	12	36871917	37033701	Rat
1588777	Rflna	refilin A	12	37038732	37047628	Rat
7580031	LOC102555795	uncharacterized LOC102555795	12	37181751	37183042	Rat
7677226	LOC102556092	uncharacterized LOC102556092	12	37183839	37210624	Rat
1561886	RGD1561886	similar to ribosomal protein L27	12	37194541	37195050	Rat
1601131	Ccdc92	coiled-coil domain containing 92	12	37210735	37237848	Rat
619988	Dnah10	dynein, axonemal, heavy chain 10	12	37237482	37365258	Rat
9133337	LOC103691347	eukaryotic translation initiation factor 1 pseudogene	12	37331639	37332271	Rat
621006	Atp6v0a2	ATPase H+ transporting V0 subunit a2	12	37368321	37398233	Rat
1591895	Tctn2	tectonic family member 2	12	37400896	37427256	Rat
1305494	Gtf2h3	general transcription factor IIH subunit 3	12	37427556	37444027	Rat
620819	Eif2b1	eukaryotic translation initiation factor 2B subunit alpha	12	37444136	37452391	Rat
2324094	Ddx55	DEAD-box helicase 55	12	37453005	37468935	Rat
69243	Tmed2	transmembrane p24 trafficking protein 2	12	37471259	37480344	Rat
1307973	Rilpl1	Rab interacting lysosomal protein-like 1	12	37490320	37528393	Rat
1310724	Snrnp35	small nuclear ribonucleoprotein U11/U12 subunit 35	12	37531082	37538823	Rat
1303140	Rilpl2	Rab interacting lysosomal protein-like 2	12	37544918	37556453	Rat
1587560	Kmt5a	lysine methyltransferase 5A	12	37558150	37581183	Rat
1310005	Sbno1	strawberry notch homolog 1	12	37593692	37650761	Rat
1308664	Cdk2ap1	cyclin-dependent kinase 2 associated protein 1	12	37668369	37677067	Rat
6498646	LOC100910427	probable peptide chain release factor C12orf65 homolog, mitochondrial-like	12	37678682	37684533	Rat
1563482	RGD1563482	similar to hypothetical protein FLJ38663	12	37680152	37682994	Rat
11361258	LOC108348169	probable peptide chain release factor C12orf65 homolog, mitochondrial	12	37686051	37699733	Rat
1598368	Mphosph9	M-phase phosphoprotein 9	12	37700282	37766487	Rat
1310867	Pitpnm2	phosphatidylinositol transfer protein, membrane-associated 2	12	37805332	37903856	Rat
7563841	LOC102552626	uncharacterized LOC102552626	12	37826751	37837870	Rat
1307657	Arl6ip4	ADP-ribosylation factor like GTPase 6 interacting protein 4	12	37904376	37906521	Rat
1310594	Ogfod2	2-oxoglutarate and iron-dependent oxygenase domain containing 2	12	37907130	37910446	Rat
9461615	LOC103691351	uncharacterized LOC103691351	12	37910505	37912208	Rat
620254	Abcb9	ATP binding cassette subfamily B member 9	12	37923974	37956678	Rat
7543130	LOC102552690	uncharacterized LOC102552690	12	37980013	37984712	Rat
1304576	Vps37b	VPS37B subunit of ESCRT-I	12	37984790	38023369	Rat
621615	Hip1r	huntingtin interacting protein 1 related	12	38024517	38053184	Rat
1586391	Ccdc62	coiled-coil domain containing 62	12	38057532	38093916	Rat
9318934	LOC103693646	uncharacterized LOC103693646	12	38081790	38082365	Rat
1584200	Denr	density regulated reinitiation and release factor	12	38095717	38117758	Rat
1586364	Hcar1	hydroxycarboxylic acid receptor 1	12	38145177	38146232	Rat
727952	Hcar2	hydroxycarboxylic acid receptor 2	12	38160464	38161546	Rat
1307905	Kntc1	kinetochore associated 1	12	38200463	38274162	Rat
9351682	LOC103693647	kinetochore-associated protein 1-like	12	38235125	38237872	Rat
1564882	Rsrc2	arginine and serine rich coiled-coil 2	12	38274290	38294294	Rat
1309774	Zcchc8	zinc finger CCHC-type containing 8	12	38303665	38327174	Rat
2323644	LOC100359550	protein S100-A11-like	12	38339863	38340304	Rat
67404	Clip1	CAP-GLY domain containing linker protein 1	12	38345203	38452650	Rat
620643	Vps33a	VPS33A core subunit of CORVET and HOPS complexes	12	38459816	38482903	Rat
1310885	Diablo	diablo, IAP-binding mitochondrial protein	12	38490230	38503344	Rat
1309612	B3gnt4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	12	38503361	38506793	Rat
1561461	Lrrc43	leucine rich repeat containing 43	12	38507102	38524715	Rat
1585183	Il31	interleukin 31	12	38527575	38538086	Rat
1560774	Mlxip	MLX interacting protein	12	38567438	38638952	Rat
1585128	Bcl7a	BAF chromatin remodeling complex subunit BCL7A	12	38659294	38691191	Rat
1564948	Wdr66	WD repeat domain 66	12	38708915	38781598	Rat
621110	Psmd9	proteasome 26S subunit, non-ATPase 9	12	38786539	38805121	Rat
7586771	LOC102547495	uncharacterized LOC102547495	12	38821287	38828645	Rat
61974	Hpd	4-hydroxyphenylpyruvate dioxygenase	12	38828606	38839956	Rat
2323325	Setd1b	SET domain containing 1B, histone lysine methyltransferase	12	38843167	38869180	Rat
7568494	LOC102556093	uncharacterized LOC102556093	12	38870132	38878652	Rat
1584038	Rhof	ras homolog family member F, filopodia associated	12	38879763	38894095	Rat
1584031	Tmem120b	transmembrane protein 120B	12	38894847	38916237	Rat
7501350	LOC102550242	ubiquitin-conjugating enzyme E2 variant 1-like	12	38935536	38944189	Rat
1583094	LOC687612	hypothetical protein LOC687612	12	38944512	38945148	Rat
1583091	Morn3	MORN repeat containing 3	12	38953199	38976520	Rat
1311873	Orai1	ORAI calcium release-activated calcium modulator 1	12	38981903	38995570	Rat
9447806	LOC103693648	wiskott-Aldrich syndrome protein family member 1-like	12	38995483	38998892	Rat
7710500	LOC102546488	uncharacterized LOC102546488	12	38995753	39005428	Rat
7734862	Lrap	locus regulating alcohol preference	12	39016258	39017876	Rat
1310217	Kdm2b	lysine demethylase 2B	12	39021924	39161954	Rat
628636	Rnf34	ring finger protein 34	12	39164290	39185209	Rat
1306125	Anapc5	anaphase-promoting complex subunit 5	12	39209134	39242696	Rat
620092	Camkk2	calcium/calmodulin-dependent protein kinase kinase 2	12	39253409	39302601	Rat
7528898	LOC102547087	60S ribosomal protein L7-like	12	39284882	39285960	Rat
62073	P2rx4	purinergic receptor P2X 4	12	39308022	39325673	Rat
1598196	LOC501838	similar to 60S ribosomal protein L32	12	39335668	39337002	Rat
3241	P2rx7	purinergic receptor P2X 7	12	39353613	39396042	Rat
727862	Ift81	intraflagellar transport 81	12	39420161	39507412	Rat
11371095	LOC108352446	60S ribosomal protein L21 pseudogene	12	39496209	39497178	Rat
2174	Atp2a2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	12	39553903	39603326	Rat
1311927	Anapc7	anaphase promoting complex subunit 7	12	39613898	39641999	Rat
2324823	LOC100363066	ribosomal protein L38-like	12	39628546	39628858	Rat
1311985	Arpc3	actin related protein 2/3 complex, subunit 3	12	39653951	39667817	Rat
7503829	LOC102548903	uncharacterized LOC102548903	12	39654245	39660733	Rat
11445374	LOC108352447	uncharacterized LOC108352447	12	39656161	39659140	Rat
1303034	Gpn3	GPN-loop GTPase 3	12	39670746	39679364	Rat
1310861	Fam216a	family with sequence similarity 216, member A	12	39679688	39688831	Rat
1308332	Vps29	VPS29 retromer complex component	12	39690069	39699114	Rat
1308223	Rad9b	RAD9 checkpoint clamp component B	12	39699076	39731218	Rat
1310383	Pptc7	protein phosphatase targeting COQ7	12	39731107	39769480	Rat
11517723	LOC108352448	uncharacterized LOC108352448	12	39741427	39748976	Rat
1566266	Tctn1	tectonic family member 1	12	39790948	39828215	Rat
1310788	Hvcn1	hydrogen voltage-gated channel 1	12	39822814	39851093	Rat
3377	Ppp1cc	protein phosphatase 1 catalytic subunit gamma	12	39864302	39882030	Rat
9331224	LOC103691357	uncharacterized LOC103691357	12	39874696	39875450	Rat
7573572	LOC102549705	uncharacterized LOC102549705	12	39890783	39899849	Rat
1562334	Ccdc63	coiled-coil domain containing 63	12	39905120	39950719	Rat
11419895	LOC108352449	P2X purinoceptor 7-like	12	39924949	39929929	Rat
1564245	Myl2	myosin light chain 2	12	39951863	39959065	Rat
1305967	Cux2	cut-like homeobox 2	12	40016774	40221067	Rat
1310656	Pheta1	PH domain containing endocytic trafficking adaptor 1	12	40225316	40230573	Rat
68411	Sh2b3	SH2B adaptor protein 3	12	40261990	40265757	Rat
1306637	Atxn2	ataxin 2	12	40264601	40335637	Rat
7543274	LOC102556457	F-box only protein 22-like	12	40317208	40320831	Rat
1586551	Brap	BRCA1 associated protein	12	40381892	40417764	Rat
1310159	Acad10	acyl-CoA dehydrogenase family, member 10	12	40417918	40460562	Rat
69219	Aldh2	aldehyde dehydrogenase 2 family member	12	40466418	40498813	Rat
1564113	Mapkapk5	MAPK activated protein kinase 5	12	40510378	40529332	Rat
621467	Adam1a	ADAM metallopeptidase domain 1a	12	40533731	40536632	Rat
1596066	Tmem116	transmembrane protein 116	12	40537261	40618805	Rat
2322512	LOC100360238	rCG21419-like	12	40551786	40556984	Rat
619781	Erp29	endoplasmic reticulum protein 29	12	40619377	40625884	Rat
1305685	Naa25	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	12	40628005	40680421	Rat
2320799	LOC100364561	40S ribosomal protein S27-like	12	40669047	40669754	Rat
2322461	LOC100360290	ribosomal protein S20-like	12	40685846	40686372	Rat
620171	Trafd1	TRAF type zinc finger domain containing 1	12	40695520	40709438	Rat
1309762	Hectd4	HECT domain E3 ubiquitin protein ligase 4	12	40712078	40860930	Rat
619826	Rpl6	ribosomal protein L6	12	40877578	40882032	Rat
3447	Ptpn11	protein tyrosine phosphatase, non-receptor type 11	12	40895515	40955999	Rat
11412175	LOC108352450	uncharacterized LOC108352450	12	40970847	40980813	Rat
1594709	LOC690551	similar to Peptidyl-prolyl cis-trans isomerase A (PPIase) (Rotamase) (Cyclophilin A) (Cyclosporin A-binding protein) (SP18)	12	40981487	40981996	Rat
620073	Rph3a	rabphilin 3A	12	41073296	41149799	Rat
1359379	Oas1i	2 ' -5 ' oligoadenylate synthetase 1I	12	41155489	41167501	Rat
1310349	Oas1d	2'-5' oligoadenylate synthetase 1D	12	41179477	41188796	Rat
621760	Oas1a	2'-5' oligoadenylate synthetase 1A	12	41200680	41211393	Rat
1359732	Oas1h	2 ' -5 ' oligoadenylate synthetase 1H	12	41214587	41224254	Rat
1359647	Oas1f	2 ' -5 ' oligoadenylate synthetase 1F	12	41227910	41237209	Rat
708393	Oas1b	2-5 oligoadenylate synthetase 1B	12	41255762	41266430	Rat
1359611	Oas1e	2'-5' oligoadenylate synthetase 1E	12	41281479	41290500	Rat

Markers in Region (Rnor_6.0)

The following Markers overlap with this region.

RGD ID	Symbol	Expected Size	Chr	Start	Stop	Species	Match
10125	DXMgh7	230	12	39282339	39282571	Rat	region
10888	D12Wox10	92	12	23941563	23941651	Rat	region
11051	D12Mit2	217	12	22650702	22650918	Rat	region
11052	D12Wox11	196	12	22650718	22650917	Rat	region
11053	D12Wox12	198	12	22650721	22650922	Rat	region
33955	D1Mit22	124	12	36814965	36815102	Rat	region
34017	D12Mit9	142	12	24858909	24859050	Rat	region
34070	D12Mgh7	138	12	41228975	41229112	Rat	region
34246	D12Mgh3	118	12	27285473	27285590	Rat	region
34417	D12Mgh2	163	12	22876297	22876459	Rat	region
34729	D12Mgh5	132	12	31723565	31723688	Rat	region
11449	D12Wox14	158	12	25013364	25013521	Rat	region
11450	D12Mgh12	140	12	25006522	25006661	Rat	region
11451	D12Mgh13	145	12	25013347	25013485	Rat	region
36025	D12Rat23	154	12	27190096	27190240	Rat	region
36101	D12Rat15	152	12	31975424	31975590	Rat	region
36119	D12Rat94	265	12	32748505	32748771	Rat	region
36125	D12Rat14	185	12	32305020	32305182	Rat	region
36344	D12Mit10	121	12	26670797	26670921	Rat	region
37250	D12Rat26	201	12	25711448	25711626	Rat	region
37334	D12Rat46	142	12	34232930	34233087	Rat	region
37346	D12Rat27	205	12	27869409	27869615	Rat	region
35433	D12Rat17	149	12	35964360	35964508	Rat	region
35479	D12Rat8	158	12	25799119	25799259	Rat	region
36805	D12Rat13	170	12	27882828	27882997	Rat	region
37830	D12Rat36	200	12	37521884	37522089	Rat	region
37878	D12Rat33	221	12	24193707	24193945	Rat	region
36490	D12Rat18	161	12	40215912	40216072	Rat	region
36538	D12Rat7	161	12	22990726	22990886	Rat	region
36755	D12Rat11	165	12	28014147	28014311	Rat	region
36795	D12Rat24	174	12	37800702	37800875	Rat	region
35126	D12Rat16	170	12	34264906	34265075	Rat	region
35889	D12Rat10	155	12	26709974	26710128	Rat	region
35923	D12Rat12	152	12	27911196	27911339	Rat	region
39626	D12Rat75	215	12	29998082	29998298	Rat	region
39844	D12Rat76	109	12	31979810	31979901	Rat	region
38084	D12Rat96	214	12	37062608	37062809	Rat	region
38108	D12Rat50	244	12	39421623	39421866	Rat	region
40454	D12Rat100	133	12	39950101	39950233	Rat	region
40668	D12Rat78	216	12	36276949	36277154	Rat	region
40702	D12Rat69	211	12	22992479	22992678	Rat	region
38404	D12Rat45	248	12	28217098	28217343	Rat	region
40112	D12Rat84	167	12	40435561	40435727	Rat	region
40214	D12Rat83	158	12	30137936	30138078	Rat	region
39060	D12Rat30	201	12	38408800	38409001	Rat	region
39218	D12Rat35	200	12	25938227	25938420	Rat	region
39236	D12Rat51	213	12	24320708	24320928	Rat	region
39332	D12Rat52	181	12	40842405	40842549	Rat	region
39446	D12Rat99	231	12	28959306	28959532	Rat	region
41962	D12Arb6	290	12	41291378	41291738	Rat	region
41962	D12Arb6	290	12	41213448	41213801	Rat	region
41156	D12Rat79	221	12	40617783	40618007	Rat	region
41384	D12Rat70	154	12	22682228	22682373	Rat	region
41440	D12Rat74	137	12	27982030	27982170	Rat	region
42965	D12Rat92	248	12	23825355	23825588	Rat	region
42966	D12Rat95	203	12	33353189	33353399	Rat	region
42967	D12Rat106	206	12	34227788	34227989	Rat	region
42969	D12Rat115	215	12	27141308	27141504	Rat	region
40766	D12Rat77	100	12	34000062	34000159	Rat	region
40986	D12Rat72	309	12	24975533	24975841	Rat	region
41626	D12Rat93	132	12	32289782	32289887	Rat	region
41786	D12Rat101	106	12	40331109	40331214	Rat	region
41826	D12Rat107	223	12	37553880	37554080	Rat	region
44997	D12Got78	173	12	39010796	39010968	Rat	region
44998	D12Got79	153	12	39917655	39917807	Rat	region
45001	D12Got70	226	12	34264863	34265088	Rat	region
44965	D12Got40	230	12	22910241	22910470	Rat	region
44966	D12Got42	161	12	22852857	22853017	Rat	region
44967	D12Got41	157	12	22852213	22852369	Rat	region
44969	D12Got102	135	12	24167501	24167635	Rat	region
44970	D12Got45	149	12	24961802	24961950	Rat	region
44971	D12Got46	216	12	29014147	29014362	Rat	region
44971	D12Got46	216	12	25307118	25307333	Rat	region
44973	D12Got103	249	12	23921751	23922001	Rat	region
44974	D12Got48	180	12	25915078	25915257	Rat	region
44975	D12Got49	185	12	26079066	26079250	Rat	region
44976	D12Got47	111	12	26462571	26462681	Rat	region
44977	D12Got50	298	12	26520671	26520968	Rat	region
44978	D12Got51	205	12	26631663	26631867	Rat	region
44979	D12Got55	222	12	26915368	26915589	Rat	region
44980	D12Got58	145	12	28876845	28876989	Rat	region
44981	D12Got67	241	12	29551323	29551563	Rat	region
44982	D12Got57	162	12	27658780	27658941	Rat	region
44983	D12Got104	196	12	29350530	29350725	Rat	region
44986	D12Got68	234	12	30935003	30935236	Rat	region
44989	D12Got64	228	12	31033694	31033921	Rat	region
44990	D12Got61	128	12	30942713	30942840	Rat	region
44991	D12Got73	271	12	34343819	34344089	Rat	region
44992	D12Got71	270	12	34264805	34265074	Rat	region
44993	D12Got72	148	12	33986905	33987050	Rat	region
44994	D12Got74	134	12	32270747	32270880	Rat	region
60755	D12Wox16	142	12	30641840	30641984	Rat	region
44995	D12Got69	184	12	32871698	32871879	Rat	region
60019	D12Got53	166	12	28858733	28858898	Rat	region
60020	D12Got54	136	12	28310379	28310514	Rat	region
60021	D12Got56	179	12	28876804	28876982	Rat	region
60022	D12Got59	187	12	29631815	29632001	Rat	region
60023	D12Got60	285	12	29822149	29822433	Rat	region
60023	D12Got60	285	12	29178645	29178929	Rat	region
60024	D12Got62	266	12	30289388	30289650	Rat	region
60025	D12Got65	197	12	31624952	31625148	Rat	region
60026	D12Got66	298	12	31384224	31384521	Rat	region
60027	D12Got75	285	12	41234942	41235223	Rat	region
60028	D12Got80	89	12	40818303	40818390	Rat	region
60029	D12Got81	192	12	41086270	41086461	Rat	region
60031	D12Got99	172	12	36308543	36308714	Rat	region
60012	D12Got105	128	12	22705864	22705991	Rat	region
60016	D12Got43	159	12	23262102	23262260	Rat	region
61278	D12Arb5		12	31723528	31723732	Rat	region
629606	D12Hmgc2	262	12	25006656	25006918	Rat	region
67290	D8Arb9	204	12	25013357	25013560	Rat	region
67356	D12Arb15	202	12	24961777	24961978	Rat	region
1630268	D12Cebr1	239	12	31093177	31093415	Rat	region
1629328	D12Got217	284	12	24923231	24923509	Rat	region
1629355	D12Mco4	0	12	35964313	35964504	Rat	region
1629355	D12Mco4	0	12	35948312	35948510	Rat	region
1629647	D12Got220	119	12	23928729	23928847	Rat	region
1640906	D12Got212	221	12	28059696	28059916	Rat	region
1632605	D12Got211	125	12	27850096	27850220	Rat	region
1637896	D12Uia3	216	12	26176962	26177177	Rat	region
1634514	D12Got214	178	12	40755113	40755290	Rat	region
7192219	Fzd9	487	12	24475764	24476250	Rat	region
7193095	AA957504	192	12	23609027	23609218	Rat	region
8693216	rs106542192		12	39109515	39109515	Rat	region
7205918	RH17921	243	12	35906040	35906282	Rat	region
7206280	Ptpn11	148	12	40922946	40923510	Rat	region
7205842	10STS02	221	12	35905936	35906156	Rat	region
5035885	PMC280674P1	715	12	37303796	37304510	Rat	region
5038888	RH127390	196	12	38484127	38484322	Rat	region
5038936	RH127418	190	12	30299840	30300029	Rat	region
5038976	RH127441	189	12	23597092	23597280	Rat	region
7206382	fj36f03.x1	0	12	32514855	32515719	Rat	region
7206766	ha3042	0	12	37301361	37302538	Rat	region
5036330	Gus-s	235	12	30204976	30205210	Rat	region
5036352	Hsp25	216	12	23839518	23839844	Rat	region
5039228	RH127586	215	12	24743520	24743734	Rat	region
5036825	AU049323	184	12	32270732	32270914	Rat	region
5037007	AU049899	204	12	26019529	26019732	Rat	region
5037065	D12S2026	337	12	39602964	39603300	Rat	region
5035498	AW533080	180	12	40788457	40788636	Rat	region
5035701	WI-15098	99	12	23561092	23561190	Rat	region
5033885	RH140486	172	12	36613811	36613982	Rat	region
5033931	RH140659	187	12	28056844	28057028	Rat	region
5033941	RH140698	187	12	39811007	39811193	Rat	region
5033987	RH140921	192	12	29300508	29300743	Rat	region
5026010	RH130563	215	12	36737576	36737790	Rat	region
5028621	RH118296	196	12	38369986	38370181	Rat	region
7205796	D5S1561E	91	12	35905434	35905524	Rat	region
7206126	UniSTS:532167	946	12	40779896	40780841	Rat	region
7206190	Eln	141	12	25020171	25020961	Rat	region
7206212	Hspb1	408	12	23839654	23840833	Rat	region
5034029	RH141085	192	12	30570898	30571089	Rat	region
5034101	RH141366	180	12	30464805	30464984	Rat	region
5034155	RH141576	216	12	27833516	27833731	Rat	region
5034159	RH141592	185	12	37365736	37365920	Rat	region
5028833	RH142503	121	12	39826352	39826472	Rat	region
5034199	RH141742	194	12	38021765	38021958	Rat	region
5034249	RH141928	0	12	25493521	25493702	Rat	region
5034337	Ncf1	165	12	28976675	28976990	Rat	region
5034337	Ncf1	165	12	25504371	25504686	Rat	region
5029061	RH143368	159	12	28155432	28155590	Rat	region
5034339	Fkbp6	481	12	24376848	24377328	Rat	region
5034383	D16S505	794	12	30803111	30803228	Rat	region
5034402	BE117132	150	12	25440651	25440800	Rat	region
5032014	AU046360	137	12	23473597	23473733	Rat	region
5034666	BF390887	174	12	32678376	32678549	Rat	region
5026638	RH132973	0	12	25127853	25128024	Rat	region
5026664	RH133068	206	12	23161758	23161963	Rat	region
5029387	RH144598	150	12	40748486	40748635	Rat	region
5026898	RH133958	187	12	40877737	40878149	Rat	region
5026902	RH133976	195	12	39663639	39663833	Rat	region
5032211	D84372	133	12	40952551	40952683	Rat	region
5035126	AI548127	209	12	24653783	24653991	Rat	region
5027036	RH134486	198	12	37427789	37427985	Rat	region
5029655	AI711004	185	12	30460977	30461161	Rat	region
5032495	D5Ertd355e	248	12	25109550	25109797	Rat	region
5035356	AW529993	150	12	39729324	39729473	Rat	region
5029871	BE097070	160	12	31586102	31586261	Rat	region
5029871	BE097070	160	12	31570753	31570912	Rat	region
5027301	AW544490	124	12	40266680	40266803	Rat	region
5027303	AW049835	110	12	39690571	39690680	Rat	region
5027305	AV006093	134	12	30533326	30533459	Rat	region
5027307	AI957187	130	12	23675101	23675230	Rat	region
5035192	BG381331	154	12	31451559	31451712	Rat	region
5035208	BM390639	203	12	23943106	23943308	Rat	region
5030109	BE098443	174	12	23816120	23816293	Rat	region
5030123	BE098792	203	12	37033433	37033635	Rat	region
5030179	BF395959	124	12	37404956	37405079	Rat	region
5025008	C85851	106	12	29307911	29308016	Rat	region
5027595	AI462243	99	12	24721775	24721873	Rat	region
5033069	RH137475	203	12	30024094	30024296	Rat	region
5030445	BE106487	158	12	38708963	38709120	Rat	region
5030479	BF403268	212	12	39823724	39823935	Rat	region
5033235	RH138082	125	12	28252844	28252968	Rat	region
5033235	RH138082	125	12	28252662	28252968	Rat	region
5033301	RH138330	157	12	39400439	39400583	Rat	region
5025306	RH127813	210	12	26945077	26945284	Rat	region
5025422	RH128254	0	12	25109414	25109641	Rat	region
8693404	rs64151264		12	29113609	29113609	Rat	region
5030615	BE107127	158	12	24566889	24567046	Rat	region
5025546	RH128738	156	12	24656634	24656789	Rat	region
5030821	BE120393	170	12	32002125	32002294	Rat	region
5030825	BE120455	158	12	39891436	39891593	Rat	region
5033617	RH139480	197	12	29925945	29926141	Rat	region
5028257	D5Mit118	157	12	39687144	39687300	Rat	region
5028259	D5Mit27	213	12	30204978	30205190	Rat	region
5030945	BF399653	145	12	30489252	30489396	Rat	region
5033783	RH140105	189	12	30667906	30668094	Rat	region
5025864	RH129983	150	12	41211240	41211389	Rat	region
5028452	AA987064	163	12	32773056	32773218	Rat	region
5031079	BE115872	151	12	28249203	28249353	Rat	region
5031143	AA925036	117	12	39161581	39161697	Rat	region
5031165	BE116737	176	12	24193228	24193403	Rat	region
5051837	RH94687	119	12	31344669	31344787	Rat	region
5052071	RH94823	255	12	30450052	30450306	Rat	region
5052075	RH94825	207	12	40952539	40952745	Rat	region
5055147	RH143632	261	12	38098234	38098494	Rat	region
5051170	RH134480	188	12	36761157	36761344	Rat	region
5053695	RH142798	101	12	30566240	30566340	Rat	region
5056311	RH144305	102	12	27341278	27341379	Rat	region
5051537	AU015798	189	12	26944996	26945184	Rat	region
5053745	RH142826	173	12	37556641	37556813	Rat	region
5053831	RH142876	162	12	22764211	22764372	Rat	region
5054003	RH142974	126	12	38878335	38878460	Rat	region
5056877	RH144632	157	12	37851374	37851530	Rat	region
5056941	RH144669	170	12	23674169	23674338	Rat	region
5051835	RH94685	217	12	25021264	25021480	Rat	region
5054195	RH143085	251	12	25442648	25442898	Rat	region
5057094	AI454805	188	12	41290276	41290463	Rat	region
5057524	AW522797	179	12	22778435	22778613	Rat	region
5055321	RH143734	122	12	30005331	30005452	Rat	region
5054439	RH143225	134	12	27414013	27414146	Rat	region
5059396	AW530578	166	12	37890970	37891135	Rat	region
5059512	BE097146	152	12	28604874	28605025	Rat	region
5055597	RH143892	132	12	39612517	39612660	Rat	region
5055615	RH143903	170	12	39729866	39730035	Rat	region
5054907	RH143493	136	12	39391951	39392086	Rat	region
5055031	RH143566	222	12	29303722	29303943	Rat	region
5057906	BI277291	215	12	24590762	24590976	Rat	region
5058000	BF386435	194	12	31457271	31457464	Rat	region
5058592	BE102132	180	12	33298573	33298755	Rat	region
5058666	BE102291	152	12	37877553	37877704	Rat	region
5058690	BE096988	180	12	30441321	30441499	Rat	region
5056395	RH144353	115	12	39255495	39255609	Rat	region
5058712	BE102361	150	12	27705709	27705858	Rat	region
5058760	BF387056	170	12	27885177	27885346	Rat	region
5059566	BE097301	153	12	29066289	29066441	Rat	region
5059566	BE097301	153	12	25359262	25359414	Rat	region
5056977	RH144689	176	12	36572044	36572219	Rat	region
5058056	BF386509	150	12	23872604	23872753	Rat	region
5058858	BF393753	115	12	31947821	31947935	Rat	region
5052573	RH125644	234	12	37471297	37471530	Rat	region
5052777	RH142267	176	12	22732472	22732804	Rat	region
5058924	BF387255	151	12	39758385	39758535	Rat	region
5059022	BF387385	184	12	37463922	37464105	Rat	region
5052815	RH142289	151	12	25070356	25070506	Rat	region
5052877	RH142325	199	12	22750530	22750728	Rat	region
5053073	RH142438	176	12	23941478	23941650	Rat	region
5059878	BI279065	181	12	37452066	37452246	Rat	region
5059892	BF388151	181	12	40536402	40536582	Rat	region
5060032	BF388305	150	12	30162607	30162756	Rat	region
5058324	BF419307	90	12	38977381	38977470	Rat	region
5049856	RH133721	207	12	29825113	29825319	Rat	region
5049856	RH133721	207	12	29181609	29181815	Rat	region
5052309	R75209	169	12	28251653	28251821	Rat	region
5053171	RH142495	102	12	27932115	27932216	Rat	region
5053175	RH142497	109	12	30704206	30704314	Rat	region
5053175	RH142497	109	12	30356169	30356277	Rat	region
5053231	RH142529	112	12	30226501	30226612	Rat	region
5058378	BG376800	94	12	32462160	32462253	Rat	region
5059120	BI278447	163	12	40498586	40498746	Rat	region
5059252	BF387881	158	12	30484432	30484589	Rat	region
5057636	BF392370	170	12	37863164	37863333	Rat	region
5057674	BE101305	210	12	23675770	23675994	Rat	region
5057830	BF386235	218	12	27691531	27691749	Rat	region
5050534	RH134112	168	12	38023172	38023339	Rat	region
5050706	RH134211	220	12	40550778	40550997	Rat	region
5053795	RH142855	128	12	28007381	28007508	Rat	region
5049902	RH133748	184	12	31134946	31135129	Rat	region
5050030	RH133822	180	12	23769294	23769473	Rat	region
5050078	RH133849	206	12	38451408	38451613	Rat	region
5050998	RH134379	214	12	36644144	36644357	Rat	region
5051014	RH134388	193	12	23587499	23588243	Rat	region
5053021	RH142408	193	12	23816355	23816547	Rat	region
5051397	AW554476	125	12	38483544	38483668	Rat	region
5051399	AW228700	94	12	38564806	38564899	Rat	region
5051403	AW212079	94	12	30740696	30740789	Rat	region
5054217	RH143097	179	12	40228195	40228373	Rat	region
5053113	RH142461	223	12	23482189	23482411	Rat	region
5054575	RH143303	219	12	38274664	38274882	Rat	region
5054853	RH143463	195	12	29910105	29910299	Rat	region
5051038	RH134402	192	12	30491507	30491698	Rat	region
5041758	RH129042	197	12	30526329	30526525	Rat	region
5041840	RH129089	153	12	23535803	23535955	Rat	region
5043946	RH130322	189	12	23687995	23688183	Rat	region
5044038	RH130374	192	12	41167135	41167326	Rat	region
5044092	RH130405	184	12	23564253	23564436	Rat	region
5043520	RH130072	150	12	30215363	30215512	Rat	region
5043588	RH130111	182	12	23453948	23454129	Rat	region
5043740	RH130200	196	12	29930293	29930488	Rat	region
5044998	RH130924	195	12	23677919	23678113	Rat	region
5045148	RH131011	183	12	40709185	40709367	Rat	region
5045350	RH131127	213	12	39820689	39820908	Rat	region
5045390	RH131150	198	12	23674972	23675169	Rat	region
5045534	RH131233	196	12	36634115	36634310	Rat	region
5041500	RH128892	212	12	38452230	38452441	Rat	region
5041628	RH128966	181	12	29931782	29931962	Rat	region
5043960	RH130330	167	12	39688600	39688766	Rat	region
5044050	RH130381	196	12	30701966	30702161	Rat	region
5044050	RH130381	196	12	30353929	30354124	Rat	region
5045720	RH131340	211	12	37903644	37903854	Rat	region
5045820	RH131397	206	12	31359896	31360101	Rat	region
5044252	RH130496	189	12	24341952	24342140	Rat	region
5047542	RH132387	210	12	39304964	39305173	Rat	region
5045994	RH131498	201	12	29269410	29269610	Rat	region
5047584	RH132412	182	12	41272212	41272393	Rat	region
5047584	RH132412	182	12	41149550	41149731	Rat	region
5048884	RH133161	208	12	24311933	24312140	Rat	region
5045830	RH131403	181	12	29925786	29925966	Rat	region
5049222	RH133356	196	12	25130573	25130766	Rat	region
5045912	RH131450	194	12	40460227	40460420	Rat	region
5048172	RH132750	204	12	22708743	22709133	Rat	region
5047040	RH132099	186	12	38326911	38327096	Rat	region
5047170	RH132174	220	12	23586887	23587200	Rat	region
5039492	RH127736	213	12	23941632	23942172	Rat	region
5039496	RH127739	195	12	37677241	37677435	Rat	region
5041982	RH129170	158	12	40225363	40226002	Rat	region
5042060	RH129215	0	12	37653542	37653738	Rat	region
5047264	RH132227	181	12	37769873	37770053	Rat	region
5048412	RH132889	186	12	23763306	23763491	Rat	region
5042866	RH129692	0	12	22651211	22651410	Rat	region
5041964	RH129160	197	12	36512401	36512598	Rat	region
5042216	RH129307	198	12	40625573	40625770	Rat	region
5040500	RH128319	191	12	39164491	39164681	Rat	region
5040162	RH128125	209	12	24314966	24315174	Rat	region
7192204	Fzd10	179	12	24475464	24475642	Rat	region
5042616	RH129542	194	12	40381933	40382126	Rat	region
5042714	RH129601	215	12	38095767	38095981	Rat	region
5041048	RH128633	220	12	40625103	40625770	Rat	region
5041094	RH128659	184	12	40955754	40955937	Rat	region
5041176	RH128706	151	12	39922498	39922648	Rat	region
5041176	RH128706	151	12	39352386	39352536	Rat	region
5043680	RH130165	201	12	39821595	39821795	Rat	region
5040586	RH128368	216	12	24233606	24233821	Rat	region
5042942	RH129737	159	12	23839460	23839618	Rat	region
5072604	RH136945	202	12	30045826	30046027	Rat	region
5072734	RH137022	169	12	39730853	39731021	Rat	region
5075082	RH138388	172	12	39641690	39641861	Rat	region
5072086	RH136643	184	12	31319681	31319864	Rat	region
5075452	RH138602	130	12	25486329	25486991	Rat	region
5075482	RH138619	128	12	24668428	24668555	Rat	region
5075594	RH138684	124	12	30563491	30563614	Rat	region
5072420	RH136839	227	12	32807742	32807968	Rat	region
5072488	RH136879	157	12	24762647	24762803	Rat	region
5076014	RH138929	192	12	37908575	37908766	Rat	region
5076326	RH139111	134	12	39391950	39392083	Rat	region
5076376	RH139139	184	12	22802805	22802988	Rat	region
5076558	RH139246	236	12	24743520	24743755	Rat	region
5074698	RH138167	126	12	37237627	37237753	Rat	region
5076630	RH139287	223	12	23891842	23892064	Rat	region
5076680	RH139316	170	12	38022576	38022745	Rat	region
5075534	RH138649	165	12	30500945	30501109	Rat	region
5075888	RH138855	217	12	28976297	28976513	Rat	region
5075888	RH138855	217	12	25504848	25505064	Rat	region
5074846	RH138252	196	12	32774191	32774388	Rat	region
5076124	RH138993	214	12	39507069	39507282	Rat	region
5075656	RH138720	122	12	30465037	30465158	Rat	region
5079492	RH141029	193	12	38839679	38839871	Rat	region
5076702	RH139329	123	12	40528751	40529216	Rat	region
5079586	RH141086	211	12	40220767	40220977	Rat	region
5077120	RH139572	218	12	36570903	36571120	Rat	region
5077140	RH139585	207	12	23469604	23469810	Rat	region
5077368	RH139716	192	12	38786563	38786754	Rat	region
5076398	RH139152	186	12	25225374	25225559	Rat	region
5076446	RH139180	139	12	38660703	38660841	Rat	region
5077942	RH140050	185	12	27179526	27179710	Rat	region
5078542	RH140404	143	12	36570903	36571045	Rat	region
5080034	RH141345	206	12	28157153	28157358	Rat	region
5078298	RH140259	199	12	28995664	28995862	Rat	region
5078298	RH140259	199	12	25288635	25288833	Rat	region
5078598	RH140436	91	12	38977386	38977476	Rat	region
5079140	RH140758	133	12	24722543	24722929	Rat	region
5079176	RH140780	182	12	38095882	38096063	Rat	region
5070646	RH134623	186	12	24680508	24680693	Rat	region
5073154	RH137270	199	12	23816348	23816546	Rat	region
5071224	RH134959	188	12	24348503	24348690	Rat	region
5073654	RH137562	247	12	25236642	25236888	Rat	region
5072872	RH137103	185	12	38564728	38564912	Rat	region
5072874	RH137104	201	12	30533283	30533483	Rat	region
5071652	RH135206	191	12	30125275	30125465	Rat	region
5073316	RH137366	190	12	39308055	39308244	Rat	region
5073340	RH137380	150	12	37453050	37453199	Rat	region
5071830	RH135309	202	12	24218687	24218888	Rat	region
5071904	RH135352	195	12	36576339	36576533	Rat	region
5071524	RH135132	182	12	30760503	30761748	Rat	region
5071528	RH135134	220	12	25531250	25531469	Rat	region
5073564	RH137509	217	12	40274101	40274317	Rat	region
5072234	RH136731	142	12	24087631	24087772	Rat	region
5071572	RH135160	211	12	30029226	30029436	Rat	region
5071600	RH135176	180	12	23532410	23532589	Rat	region
5071766	RH135272	186	12	41179657	41179842	Rat	region
5061782	AW533444	153	12	32916243	32916395	Rat	region
5064982	BE108813	170	12	37523213	37523382	Rat	region
5064992	BE108855	163	12	27232328	27232490	Rat	region
5065118	BF405946	194	12	30762880	30763073	Rat	region
5066672	AU048219	113	12	28494138	28494250	Rat	region
5066976	AU048039	163	12	28295994	28296156	Rat	region
5067020	AU048013	176	12	28802005	28802180	Rat	region
5067026	AU048009	127	12	34029330	34029456	Rat	region
5067328	AU047820	202	12	31958824	31959025	Rat	region
5067440	AU047743	166	12	23359247	23359412	Rat	region
5067446	AU047739	171	12	25670618	25670782	Rat	region
5067470	AU047724	238	12	39331165	39331402	Rat	region
5067578	AU047661	128	12	32884477	32884604	Rat	region
5067606	AU047644	180	12	26461153	26461332	Rat	region
5067608	AU047633	193	12	26461153	26461345	Rat	region
5067610	AU047642	165	12	32884471	32884635	Rat	region
5067688	AU047595	111	12	28182398	28182508	Rat	region
5068292	AU047234	131	12	30114714	30114838	Rat	region
5068616	AU047037	210	12	24213901	24214110	Rat	region
5068766	AU046945	184	12	34747101	34747271	Rat	region
5068860	AU046881	284	12	39831504	39831782	Rat	region
5069036	AU046764	158	12	29907650	29907807	Rat	region
5070281	RH94577	178	12	22651055	22651232	Rat	region
5069284	AU046599	190	12	25091743	25091927	Rat	region
5061906	BI294189	190	12	29993637	29993826	Rat	region
5063564	BI289921	203	12	37727630	37727832	Rat	region
5060418	BE110007	168	12	37105310	37105477	Rat	region
5060600	BE110558	180	12	28243648	28243827	Rat	region
5060624	BE110694	159	12	39958916	39959073	Rat	region
5062286	BF403047	149	12	40557777	40557925	Rat	region
5062302	BI288626	185	12	25148742	25148926	Rat	region
5063790	AW535181	183	12	29028686	29028868	Rat	region
5063790	AW535181	183	12	25321657	25321839	Rat	region
5063954	AW535897	169	12	28253958	28254129	Rat	region
5063976	BE120355	168	12	23452384	23452552	Rat	region
5065484	BF412251	116	12	27842893	27843008	Rat	region
5065682	BF412746	94	12	23332802	23332895	Rat	region
5060954	BF389547	143	12	33882334	33882476	Rat	region
5062594	BE106902	162	12	39302433	39302594	Rat	region
5064398	BF411168	226	12	23381291	23381516	Rat	region
5065922	BE116124	212	12	32806401	32806612	Rat	region
5062016	BI294736	218	12	38161769	38161986	Rat	region
5062052	BI294823	189	12	40810046	40810234	Rat	region
5062110	BF397463	207	12	24696511	24696984	Rat	region
5063774	AW535146	159	12	24565881	24566039	Rat	region
5065400	AA957504	90	12	23608967	23609056	Rat	region
5065460	BF412122	151	12	39660371	39660521	Rat	region
5060602	BE110564	160	12	37368035	37368194	Rat	region
5062190	BF397544	204	12	38498714	38498917	Rat	region
5064116	BE120626	157	12	28192040	28192196	Rat	region
5065492	BI303226	201	12	31332185	31332385	Rat	region
5065702	BF406235	157	12	32533922	32534078	Rat	region
5064324	AW529994	209	12	24588712	24588920	Rat	region
5064386	BF399187	219	12	31457188	31457406	Rat	region
5065896	AA964673	117	12	24312938	24313054	Rat	region
5065990	BE116442	175	12	39298347	39298521	Rat	region
5066040	AA925378	207	12	32780461	32780667	Rat	region
5061024	BF389756	218	12	23862761	23862978	Rat	region
5061170	BE099159	165	12	22804505	22804669	Rat	region
5064686	BE108318	191	12	28011025	28011215	Rat	region
5066402	AU048378	133	12	24690228	24690360	Rat	region
5061348	BF396285	123	12	38843276	38843398	Rat	region
5061466	BE105245	151	12	31605367	31605517	Rat	region
5063204	BF410495	116	12	33829809	33829924	Rat	region
5066450	AU048349	132	12	39500927	39501058	Rat	region
5066494	AU048323	126	12	30076431	30076556	Rat	region
5066570	AU048279	137	12	26391822	26391958	Rat	region
5084352	AA945300	202	12	40628255	40628456	Rat	region
5086066	AW529466	165	12	24476648	24476812	Rat	region
5086363	AA874832	191	12	39242462	39242652	Rat	region
5086377	BQ205524	202	12	26394420	26394621	Rat	region
5087114	AI511394	150	12	25128216	25128365	Rat	region
5082929	BF390440	164	12	31604628	31604791	Rat	region
5082979	BF390551	160	12	24161632	24161791	Rat	region
5087446	PMC180925P1	753	12	24003392	24004144	Rat	region
5089147	AU048982	137	12	27658801	27658937	Rat	region
5088269	AU048467	127	12	34051521	34051647	Rat	region
5088275	AU048471	145	12	29798060	29798204	Rat	region
5088275	AU048471	145	12	29154202	29154346	Rat	region
5089283	AU049064	185	12	29551318	29551502	Rat	region
5089401	AU049134	152	12	41291396	41291554	Rat	region
5089401	AU049134	152	12	41213632	41213783	Rat	region
5083337	BF417900	202	12	23810010	23810211	Rat	region
5083619	BI276461	171	12	38786105	38786279	Rat	region
5088299	AU048487	168	12	23845494	23845661	Rat	region
5088299	AU048487	168	12	23844740	23845661	Rat	region
5088305	AU048490	237	12	36676527	36676763	Rat	region
5090807	AU049974	208	12	23220199	23220406	Rat	region
5083691	BG375003	121	12	31936546	31936666	Rat	region
5088655	AU048698	165	12	25218525	25219371	Rat	region
5088655	AU048698	165	12	25218525	25218688	Rat	region
5088827	AU048794	232	12	24207674	24207905	Rat	region
5089587	AU049244	98	12	32734491	32734588	Rat	region
5089613	AU049259	269	12	33717437	33717705	Rat	region
5089619	AU049263	194	12	27141331	27141524	Rat	region
5089627	AU049267	158	12	30514883	30515040	Rat	region
5090467	AU049767	193	12	26285253	26285445	Rat	region
5090515	AU049797	289	12	26693527	26693815	Rat	region
5081457	Fzd9	269	12	24475515	24475783	Rat	region
5081461	UniSTS:230793	351	12	25068982	25069332	Rat	region
5090105	AU049553	203	12	37408379	37408581	Rat	region
5087171	BQ207717	197	12	39910582	39910778	Rat	region
5082125	BF409796	221	12	39508790	39509010	Rat	region
5088143	Baz1b	121	12	24536712	24536832	Rat	region
5082163	BI280199	151	12	22675539	22675689	Rat	region
5082331	BI274506	161	12	24989198	24989358	Rat	region
5082421	BE119354	170	12	29394762	29394931	Rat	region
5082437	BI274753	205	12	25487593	25487797	Rat	region
5088259	AU048461	162	12	25898374	25898535	Rat	region
5085092	AW533191	151	12	31022400	31022550	Rat	region
5085345	BE100612	165	12	25598206	25598377	Rat	region
5090417	AU049738	129	12	28379376	28379504	Rat	region
5090531	AU049807	198	12	40613455	40613652	Rat	region
5088703	AU048726	83	12	34317625	34317707	Rat	region
5088717	AU048735	193	12	33161290	33161482	Rat	region
5085387	BM390241	201	12	37582993	37583193	Rat	region
5085537	BE097726	203	12	29477770	29477972	Rat	region
5085760	BM390895	181	12	38062451	38062631	Rat	region
5090141	AU049574	241	12	36044978	36045204	Rat	region
5080714	RH141739	183	12	32772950	32773132	Rat	region
5080924	RH141862	199	12	37367621	37367819	Rat	region
5081258	RH142057	192	12	23568394	23568585	Rat	region
5084786	AI171447	119	12	30668102	30668220	Rat	region
5083203	BI275304	166	12	37648574	37648739	Rat	region
5083365	AA818673	142	12	30177953	30178246	Rat	region
5086572	BE114476	157	12	28116443	28116599	Rat	region
5081414	AI502108	184	12	39731899	39732082	Rat	region
5081459	UniSTS:230791	255	12	24475529	24475783	Rat	region
5086787	BE107332	214	12	23560051	23560264	Rat	region
5086845	AI008308	155	12	23827760	23827909	Rat	region
5085709	BE101960	176	12	23865648	23865823	Rat	region
5085736	BF388086	155	12	37986059	37986213	Rat	region
5085800	BF388132	200	12	24530977	24531176	Rat	region
5085828	BF388170	183	12	40753132	40753314	Rat	region
5086034	BM383880	189	12	26487616	26487804	Rat	region
5503072	Sbds	161	12	29921508	29922592	Rat	region
5502989	D5Dcr13	141	12	24891374	24891514	Rat	region
5503867	SSC3D06	197	12	23817604	23817800	Rat	region
5507648	Eln	698	12	24996157	24996854	Rat	region
5504819	ha2178	866	12	27439374	27440239	Rat	region
5504869	ha2717	0	12	36664956	36666392	Rat	region
5505879	UniSTS:495988	92	12	31759177	31759268	Rat	region
5505919	Mmp17	95	12	30717732	30717826	Rat	region
5506193	UniSTS:498764	430	12	31624166	31624595	Rat	region
5506270	GDB:4585697	84	12	23590047	23590130	Rat	region
5506288	STS-Z41378	0	12	32014434	32014968	Rat	region
5506729	G44856	274	12	39765611	39765884	Rat	region
5507319	G48114	154	12	25070313	25070466	Rat	region
5499595	Wbscr1	215	12	25107449	25108107	Rat	region
5499633	MARC_5817-5818:991939742:3	300	12	33182625	33182924	Rat	region
5499605	MARC_2373-2374:991932707:1	334	12	40266592	40267721	Rat	region
5499597	Wbscr14	147	12	24591223	24592282	Rat	region
5499663	MARC_6945-6946:992007577:2	582	12	23996883	23997464	Rat	region
5499837	UniSTS:234929	717	12	38291446	38292162	Rat	region
5499899	UniSTS:235344	206	12	22675719	22675924	Rat	region
5502733	RSRC2	168	12	38291441	38291608	Rat	region
5503095	ASL	204	12	30176380	30176843	Rat	region
5500713	RH91194	1560	12	24241646	24243205	Rat	region
5500847	G15902	192	12	39600052	39600243	Rat	region
5500408	GDB:455130	84	12	38833759	38833842	Rat	region
5500875	D5S503	1483	12	24429050	24430532	Rat	region
5501922	MARC_17487-17488:1030377680:1	0	12	40300685	40302210	Rat	region
5502313	RH124405	0	12	38844353	38844563	Rat	region
5502345	RH124557	175	12	37471290	37471464	Rat	region
5502609	RH125524	82	12	26946000	26946081	Rat	region
5502875	Fzd10	838	12	31759262	31760101	Rat	region
5502475	RH125009	259	12	26925114	26925372	Rat	region
11529999	rs197969186		12	23920656	23920656	Rat	region
11529998	rs196994347		12	24078608	24078608	Rat	region
11530000	rs197046678		12	24394383	24394383	Rat	region

Position Markers

Flank 1: (D12Wox12)

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	22,650,721 - 22,650,922	NCBI
Rnor_5.0	12	24,663,002 - 24,663,203	UniSTS
RGSC_v3.4	12	20,932,555 - 20,932,757	RGD
RGSC_v3.4	12	20,932,556 - 20,932,757	UniSTS
RGSC_v3.1	12	20,922,167 - 20,922,369	RGD
Celera	12	21,386,649 - 21,386,850	UniSTS
Cytogenetic Map	12	q11-q12	UniSTS
RH 3.4 Map	12	277.5	UniSTS
RH 3.4 Map	12	277.5	RGD
RH 2.0 Map	12	197.1	RGD

Peak: (D12Wox12)

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	22,650,721 - 22,650,922	NCBI
Rnor_5.0	12	24,663,002 - 24,663,203	UniSTS
RGSC_v3.4	12	20,932,555 - 20,932,757	RGD
RGSC_v3.4	12	20,932,556 - 20,932,757	UniSTS
RGSC_v3.1	12	20,922,167 - 20,922,369	RGD
Celera	12	21,386,649 - 21,386,850	UniSTS
Cytogenetic Map	12	q11-q12	UniSTS
RH 3.4 Map	12	277.5	UniSTS
RH 3.4 Map	12	277.5	RGD
RH 2.0 Map	12	197.1	RGD

Flank 2: (D12Arb6)

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	41,213,448 - 41,213,801	NCBI
Rnor_6.0	12	41,291,378 - 41,291,738	NCBI
Rnor_5.0	12	43,150,549 - 43,150,909	UniSTS
RGSC_v3.4	12	36,894,447 - 36,894,750	UniSTS
RGSC_v3.4	12	36,818,781 - 36,819,134	UniSTS
RGSC_v3.4	12	36,894,446 - 36,894,750	RGD
RGSC_v3.4	12	36,818,780 - 36,819,134	RGD
RGSC_v3.1	12	36,757,835 - 36,758,138	RGD
Celera	12	37,422,909 - 37,423,212	UniSTS
Celera	12	37,346,026 - 37,346,376	UniSTS
Cytogenetic Map	12		RGD
RH 3.4 Map	12	618.9	UniSTS
RH 3.4 Map	12	618.9	RGD
RH 2.0 Map	12	466.8	RGD
SHRSP x BN Map	12	44.35	RGD

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	22876297	43799153	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	18342477	52716770	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	492578	45492578	Rat
2302042	Pia38	Pristane induced arthritis QTL 38	3.5	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	2513442	47513442	Rat
2302060	Pia37	Pristane induced arthritis QTL 37	6.1	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	18729043	52716770	Rat
61443	Btemp2	Thermal response to stress QTL 2	3.3		body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	12	17114770	23839390	Rat
70169	Eae13	Experimental allergic encephalomyelitis QTL 13		0.032	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	12	27190240	42196641	Rat
61324	Eae5	Experimental allergic encephalomyelitis QTL 5	14		nervous system integrity trait (VT:0010566)	percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)	12	22650702	52716770	Rat
1331755	Bp219	Blood pressure QTL 219	3.041		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	13127211	31723688	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	13127211	50320041	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	27285473	36161779	Rat
737822	Alc10	Alcohol consumption QTL 10	2.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	12	22650702	45946937	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	22650721	41291738	Rat
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	24906590	52716770	Rat
737979	Pia22	Pristane induced arthritis QTL 22	53.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2475687	47475687	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	13127211	27285590	Rat
1331787	Rf41	Renal function QTL 41	2.998		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	12	31723688	45946802	Rat
1581516	Cm56	Cardiac mass QTL 56	4.2	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	1	30749723	Rat
631521	Pia12	Pristane induced arthritis QTL 12	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	23241246	26710128	Rat
631543	Bp83	Blood pressure QTL 83	5.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	17185580	44098244	Rat
1300162	Bp188	Blood pressure QTL 188	3.19		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	37521884	51955754	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	8954593	27911196	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	18342477	52716770	Rat
1598855	Bp294	Blood pressure QTL 294	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	1	36919844	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	15908900	52716770	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	17960865	38409001	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	15908900	52716770	Rat
634350	Apr4	Acute phase response QTL 4	6		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	4210051	49210051	Rat
634351	Apr5	Acute phase response QTL 5	6.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	12	2513442	47513442	Rat
1600386	Calcic2	Intracellular calcium level QTL 2		0.001	platelet physiology trait (VT:0005464)	platelet intracellular calcium level (CMO:0000922)	12	31723565	52716770	Rat
1300157	Rf21	Renal function QTL 21	4.4		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	12	11764995	37522089	Rat
1300175	Cm5	Cardiac mass QTL 5	3.78		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	31723565	51955754	Rat
1549902	Bp269	Blood pressure QTL 269			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	18752593	52716770	Rat
1549912	Bp268	Blood pressure QTL 268			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	18752593	52716770	Rat
1556747	Calcic1	Intracellular calcium level QTL 1		3.6	platelet calcium amount (VT:0010500)	platelet intracellular calcium level (CMO:0000922)	12	31723565	47433663	Rat
2312418	Kidm41	Kidney mass QTL 41	3.7	0.0001	kidney mass (VT:0002707)	single kidney wet weight as percentage of body weight (CMO:0000623)	12	1	22650917	Rat
2306789	Ean6	Experimental allergic neuritis QTL 6	4.9		nervous system integrity trait (VT:0010566)	experimental autoimmune neuritis severity score (CMO:0001528)	12	22650702	27190240	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15021986	52716770	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	10175889	31975590	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	10256890	31723732	Rat
631829	Alc6	Alcohol consumption QTL 6	4.7		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	12	32289782	43305579	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	14419775	52716770	Rat
61416	Pia4	Pristane induced arthritis QTL 4	8.4		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	12	15714609	35964508	Rat
61421	Cia12	Collagen induced arthritis QTL 12	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	15714609	41291738	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	23758197	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	22650702	48598906	Rat
8693635	Alc28	Alcohol consumption QTL 28	2.7	0.439	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	29113609	50757185	Rat
8693658	Alc33	Alcohol consumption QTL 33	2.1	0.68	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	29113609	49560679	Rat
7411660	Foco28	Food consumption QTL 28	10.9	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	150810	45150810	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	9223626	52716770	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	9223626	52716770	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	9223626	52716770	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	9223630	52716770	Rat
9590086	Insglur6	Insulin/glucose ratio QTL 6	18.97	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	12	150810	45150810	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	9223626	52716770	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	26098845	52716770	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	9223626	52716770	Rat
8694179	Bw150	Body weight QTL 150	2.9	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	150810	45150810	Rat
7411586	Foco5	Food consumption QTL 5	5.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	150810	45150810	Rat
7411595	Foco9	Food consumption QTL 9	4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	150810	45150810	Rat
7411545	Bw128	Body weight QTL 128	5.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	150810	45150810	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	9223626	52716770	Rat
9590147	Scort7	Serum corticosterone level QTL 7	13.61	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	12	150810	45150810	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	38334225	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight as percentage of body weight (CMO:0000140)	12	9789834	52716770	Rat
11530002	Bss119	Bone structure and strength QTL 119	16.39	0.00000000000000004	lumbar vertebra area (VT:0010570)	lumbar vertebra area (CMO:0001688)	12	23920656	24394383	Rat
10450854	Stl34	Serum triglyceride level QTL 34	3.5	0.05	blood LDL triglyceride amount (VT:0010699)	blood lipoprotein triglyceride level (CMO:0002685)	12	1	22853017	Rat
10755457	Coatc14	Coat color QTL 14		0.01759	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	12	1	23035872	Rat

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Cia25

RGD Curation Notes

Note Type	Note	Reference
qtl_cross_type	intercross
qtl_disease	involved in regulating mean arthritis scores and severity during mid-to-late disease course	1285224
qtl_gene	whole genome analysis using PGMapper revealed Ncf1 as RA associated gene and Ncf1 as RA associated polymorphism either in coding or regulatory region	2300074
qtl_gene	471 known and 117 novel genes were found in an analysis based on PubMed and OMIM data	2307198
qtl_general	female-specific arthritis-severity recessive locus in which maximum LOD was observed on day 28	1285224

More on Cia25
	JBrowse: rn5 rn6
	QTL Registration

RGD Object Information
RGD ID:	1298081
Created:	2004-04-30
Species:	Rattus norvegicus
Last Modified:	2005-01-28
Status:	ACTIVE

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.