Cia25 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Cia25 (Collagen induced arthritis QTL 25) Rattus norvegicus

Symbol: Cia25
Name: Collagen induced arthritis QTL 25
RGD ID: 1298081
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: joint inflammation composite score   (CMO:0000919)    
LOD Score: 4.7
P Value: Not Available
Variance: Not Available
Inheritance Type: recessive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21219,610,889 - 35,682,913RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01222,650,721 - 41,291,738RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01224,663,002 - 43,150,909RGDRnor5.0
RGSC_v3.41220,932,555 - 36,894,750RGDRGSC3.4
RGSC_v3.11220,922,167 - 36,758,138RGD
Cross Type: intercross
Strains Crossed: DA/BklArbN ACI/SegHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Ncf1 is a candidate Gene for Cia25

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
ACI/SegHsd  (IEA)
DA/BklArbN  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Cia25 On rat chromosome 12 regulates severity of autoimmune arthritis induced with pristane and collagen. Brenner M, etal., Ann Rheum Dis. 2007 Feb 28;.
2. Quest for arthritis-causative genetic factors in the rat. Joe B Physiol Genomics. 2006 Oct 3;27(1):1-11. Epub 2006 Jun 27.
3. Identification of Two Novel Female-Specific Non-MHC Loci Regulating Collagen-Induced Arthritis Severity and Chronicity, and Evidence for Epistasis. Meng HC,etal., Arthritis Rheum. 2004 Aug;50(8):2695-705.
4. The complexity in hunting for candidate genes within QTL that determine susceptibility to arthritis in rats. Xiong Q, etal., Crit Rev Immunol. 2008;28(2):127-57.
5. Genetic and molecular basis of quantitative trait loci of arthritis in rat: genes and polymorphisms. Xiong Q, etal., J Immunol. 2008 Jul 15;181(2):859-64.
Related QTLs

Related QTL Description Reference
Cia12 maps to same region RGD:1285224


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3249Serpine1serpin family E member 1121960127219611657Rat
1305911Ap1s1adaptor related protein complex 1 subunit sigma 1121962526719635792Rat
69399VgfVGF nerve growth factor inducible121963731319645123Rat
1592588Mogat3monoacylglycerol O-acyltransferase 3121966870319669420Rat
631339Plod3procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3121967638419686945Rat
4888576Mir702microRNA 702121968180919681915Rat
2322870Znhit1zinc finger, HIT-type containing 1121968660619692880Rat
1310678Cldn15claudin 15121969816719708419Rat
1306668Fis1fission, mitochondrial 1121970856019723392Rat
6496734LOC100910802uncharacterized LOC100910802121974235519757486Rat
1305370Ift22intraflagellar transport 22121975907219768859Rat
1591401Col26a1collagen type XXVI alpha 1 chain121979269319938556Rat
1561258Myl10myosin light chain 10121996917419982627Rat
41397405LOC120095912uncharacterized LOC120095912122004641720053457Rat
620618Cux1cut-like homeobox 1122010706220425868Rat
69284Sh2b2SH2B adaptor protein 2122042705720456845Rat
1595708Prkrip1PRKR interacting protein 1122047080220491789Rat
1310213Orai2ORAI calcium release-activated calcium modulator 2122050030820520428Rat
1308608Alkbh4alkB homolog 4, lysine demethylase122052403020529947Rat
1359442Lrwd1leucine-rich repeats and WD repeat domain containing 1122053003520543078Rat
1310198Polr2jRNA polymerase II subunit J122054303820548590Rat
1565457Rasa4RAS p21 protein activator 4122055280520580177Rat
1598237Upk3bl1uroplakin 3B like 1122061035320616366Rat
41214653LOC120095913uncharacterized LOC120095913122062250520633507Rat
1309615Upk3buroplakin 3B122063023120637634Rat
1561790Dtx2deltex E3 ubiquitin ligase 2122064328920682908Rat
41148403LOC120096097U6 spliceosomal RNA122064436520644470Rat
620606Zp3zona pellucida glycoprotein 3122069054720697513Rat
1306970Ssc4dscavenger receptor cysteine rich family member with 4 domains122070293120723732Rat
40927760LOC120096095U6 spliceosomal RNA122072241820722523Rat
62002Ywhagtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma122074450020772828Rat
41184641Rps11-ps6ribosomal protein S11, pseudogene 6122078737120791987Rat
61306Hspb1heat shock protein family B (small) member 1122079401420795675Rat
1587868Srrm3serine/arginine repetitive matrix 3122080887820878557Rat
11499585LOC108352435uncharacterized LOC108352435122088043520891489Rat
619719Mdh2malate dehydrogenase 2122089426920907225Rat
1305845Styxl1serine/threonine/tyrosine interacting-like 1122090741020940232Rat
1311474Tmem120atransmembrane protein 120A122094224320950908Rat
68335Porcytochrome p450 oxidoreductase122095105820999198Rat
1308231Rhbdd2rhomboid domain containing 2122104360521054305Rat
1310245Ccl24C-C motif chemokine ligand 24122110083521104832Rat
1587817Ccl26C-C motif chemokine ligand 26122110938421114336Rat
1583828Rps13-ps4ribosomal protein S13, pseudogene 4122112530921125763Rat
620305Hip1huntingtin interacting protein 1122113336421267796Rat
41306277LOC120095918uncharacterized LOC120095918122115005021151606Rat
620680Pom121POM121 transmembrane nucleoporin122127371321294299Rat
41275322LOC120095917uncharacterized LOC120095917122127463921276764Rat
1309268Nsun5NOP2/Sun RNA methyltransferase 5122129363721299319Rat
631346Trim50tripartite motif-containing 50122130078421317668Rat
1308926Fkbp6FKBP prolyl isomerase family member 6122131825121390350Rat
41198486LOC120095916uncharacterized LOC120095916122139043821401115Rat
628817Fzd9frizzled class receptor 9122142708421429398Rat
1597089Baz1bbromodomain adjacent to zinc finger domain, 1B122143198521489956Rat
41064979LOC1200960805S ribosomal RNA122147615321476268Rat
1597090Bcl7bBAF chromatin remodeling complex subunit BCL7B122149686021510079Rat
1595038Tbl2transducin (beta)-like 2122151760021531896Rat
620400MlxiplMLX interacting protein-like122154160821577120Rat
1587769Vps37dVPS37D subunit of ESCRT-I122160921021614669Rat
1595783Dnajc30DnaJ heat shock protein family (Hsp40) member C30122162831921629398Rat
1589742Bud23BUD23, rRNA methyltransferase and ribosome maturation factor122162955121640758Rat
41383089LOC120096124small Cajal body-specific RNA 20122163961521639747Rat
69430Stx1asyntaxin 1A122164197121670022Rat
1585479Abhd11-as1ABHD11 antisense RNA 1 (tail to tail)122168111821682106Rat
1304681Abhd11abhydrolase domain containing 11122168220621685331Rat
68425Cldn3claudin 3122170853821710010Rat
41401627Rps13-ps6ribosomal protein S13, pseudogene 6122171220021715310Rat
1585449Arpc5l-ps3actin related protein 2/3 complex, subunit 5-like, pseudogene 3122173477521735623Rat
1307932Cldn4claudin 4122175163821753436Rat
1588881Mettl27methyltransferase like 27122175754521766698Rat
9242288LOC103691506claudin-4-like122177606621776722Rat
41255513LOC120095920uncharacterized LOC120095920122179357721800351Rat
1561903Tmem270transmembrane protein 270122179363121798723Rat
7520086LOC102553484uncharacterized LOC102553484122196238721969793Rat
67394Elnelastin122196854422011929Rat
62055Limk1LIM domain kinase 1122202669722060605Rat
11405154LOC10835248440S ribosomal protein S14 pseudogene122206842522069114Rat
1359222Eif4heukaryotic translation initiation factor 4H122208315522099876Rat
631397Lat2linker for activation of T cells family, member 2122210417322118294Rat
621198Rfc2replication factor C subunit 2122212044922133576Rat
7689818LOC102553558uncharacterized LOC102553558122213845522140424Rat
1583827Chmp5-ps3charged multivesicular body protein 5, pseudogene 3122214657622147671Rat
1563240Ervfrd-1endogenous retrovirus group FRD member 1, envelope122215121122158264Rat
62019Clip2CAP-GLY domain containing linker protein 2122216304422227023Rat
620856Gtf2ird1GTF2I repeat domain containing 1122225411322361052Rat
727961Gtf2igeneral transcription factor II I122240093322476243Rat
61307Ncf1neutrophil cytosolic factor 1122248538222494647Rat
1307435Gtf2ird2GTF2I repeat domain containing 2122249776722536455Rat
1307558Rcc1lRCC1 like122254312522574042Rat
1304672Castor2cytosolic arginine sensor for mTORC1 subunit 2122257750422620182Rat
7587101LOC102553721uncharacterized LOC102553721122262846522635776Rat
40965707LOC120096096U6 spliceosomal RNA122276037022760469Rat
6488308Rpsa-ps7ribosomal protein SA, pseudogene 7122279671522803092Rat
40951983LOC120095854uncharacterized LOC120095854122280502222815570Rat
41319237LOC120095855uncharacterized LOC120095855122285966222867915Rat
41001183LOC120095924uncharacterized LOC120095924122293268922945250Rat
40992997LOC120095926uncharacterized LOC120095926122322144823319564Rat
41373117LOC120095927uncharacterized LOC120095927122341717523434982Rat
11435442LOC108352438uncharacterized LOC108352438122366574023707081Rat
7489014Mir6322microRNA 6322122378000123780119Rat
41166140Rps29-ps4ribosomal protein S29, pseudogene 4122379983923800137Rat
41344750Pnp-ps1purine nucleoside phosphorylase, pseudogene 1122389459123895813Rat
2323959Auts2activator of transcription and developmental regulator AUTS2122410418725194123Rat
40964822LOC120095842uncharacterized LOC120095842122496547324968048Rat
1563452Galnt17polypeptide N-acetylgalactosaminyltransferase 17122532323025781897Rat
7684404LOC102550645uncharacterized LOC102550645122580013725805997Rat
1305843Caln1calneuron 1122581174326303670Rat
41391291Trnas-aga21transfer RNA serine (anticodon AGA) 21122614549226145564Rat
1310420Tyw1tRNA-yW synthesizing protein 1 homolog122633202026418286Rat
41132218Ifitm1-ps2interferon induced transmembrane protein 1, pseudogene 2122639569326395896Rat
1311043SbdsSbds, ribosome maturation factor122642041026429650Rat
1303319Tmem248transmembrane protein 248122643077526457105Rat
41387608Trnal-aag19transfer RNA leucine (anticodon AAG) 19122645849526458569Rat
1307295Rabgef1RAB guanine nucleotide exchange factor 1122645919026503790Rat
1582914Kctd7potassium channel tetramerization domain containing 7122652096926532327Rat
1308473Tpst1tyrosylprotein sulfotransferase 1122654453626605706Rat
620753CrcpCGRP receptor component122662396826659756Rat
619974Aslargininosuccinate lyase122665966426677136Rat
41266323LOC120096116small nucleolar RNA SNORA17122668094826681081Rat
41387478Trnat-agu12transfer RNA threonine (anticodon AGU) 12122668978826689862Rat
1598198Rps9-ps15ribosomal protein S9, pseudogene 15122669235326698674Rat
41014265LOC120096125small nucleolar RNA SNORA81122669321226693392Rat
41161287LOC120096127small nucleolar RNA SNORA81122669615026696237Rat
2772Gusbglucuronidase, beta122670118826714718Rat
1303249Vkorc1l1vitamin K epoxide reductase complex, subunit 1-like 1122671795926768193Rat
41114360Trnaa-agc84transfer RNA alanine (anticodon AGC) 84122676349126763563Rat
1560258Nupr2nuclear protein 2, transcriptional regulator122680012326803228Rat
1559988Zbed5zinc finger BED-type containing 5122680765226813706Rat
7646482LOC102555557MLV-related proviral Env polyprotein-like122682069126822694Rat
6496638Chchd2coiled-coil-helix-coiled-coil-helix domain containing 2122682873826834762Rat
3325Phkg1phosphorylase kinase catalytic subunit gamma 1122683882226854547Rat
1563253Sumf2sulfatase modifying factor 2122685356126871835Rat
40968761LOC120095933uncharacterized LOC120095933122686188326865773Rat
1304763Cct6achaperonin containing TCP1 subunit 6A122687273626883125Rat
41308945LOC120096108small nucleolar RNA SNORA15122687576126875891Rat
41347348Snora22csmall nucleolar RNA, H/ACA box 22C122688078826880922Rat
1308764Psphphosphoserine phosphatase122688252426905084Rat
1566421Nipsnap2nipsnap homolog 2122690606826944201Rat
40971147LOC120096123small nucleolar RNA SNORA76122692392026924065Rat
1307650Mrps17mitochondrial ribosomal protein S17122694853526951828Rat
1596186Septin14septin 14122697528327005588Rat
11492414LOC10835244040S ribosomal protein S25 pseudogene122702189927022580Rat
2324824Zfp11zinc finger protein 11122702806727040846Rat
1311541Mmp17matrix metallopeptidase 17122707439827099317Rat
41053934LOC120095935uncharacterized LOC120095935122707716627079043Rat
1305004Sfswapsplicing factor SWAP122710960727179941Rat
7689144LOC102555340uncharacterized LOC102555340122731604127324144Rat
1594795Adgrd1adhesion G protein-coupled receptor D1122748890827603714Rat
40947512LOC120095936uncharacterized LOC120095936122761394627623220Rat
41096920LOC120095937uncharacterized LOC120095937122763709427645516Rat
620367RanRAN, member RAS oncogene family122767404927678598Rat
2558Stx2syntaxin 2122767874427714751Rat
708533Rimbp2RIMS binding protein 2122774761527946256Rat
1306980Piwil1piwi-like RNA-mediated gene silencing 1122794974327970645Rat
11518793LOC108352441uncharacterized LOC108352441122797074527974390Rat
1583825Fzd10frizzled class receptor 10122809837128101566Rat
11406627Rps20-ps3ribosomal protein S20, pseudogene 3122814558828146353Rat
41145714LOC120095942uncharacterized LOC120095942122824438928263727Rat
735062Tmem132dtransmembrane protein 132D122827003928917324Rat
40950631LOC120095943uncharacterized LOC120095943122830924128329042Rat
1304896Glt1d1glycosyltransferase 1 domain containing 1122897598429049707Rat
708469Slc15a4solute carrier family 15 member 4122904863429082480Rat
1583824Tmem132ctransmembrane protein 132C122911521329437900Rat
11472079LOC108352443uncharacterized LOC108352443122914059329146192Rat
41181629Tmem254-ps1transmembrane protein 254, pseudogene 1122939753429414987Rat
41348602LOC120095946uncharacterized LOC120095946122946757229469165Rat
41154964LOC120096083U2 spliceosomal RNA122946950029469687Rat
1559821Myl6l2myosin light chain 6 like 2122948809129488746Rat
41083776LOC120095947uncharacterized LOC120095947122950898329528608Rat
9386528Rpl7-ps7ribosomal protein L7, pseudogene 7122955463029556108Rat
9188281LOC103691337uncharacterized LOC103691337122964621429652464Rat
41351787LOC120095949uncharacterized LOC120095949122973060929736279Rat
41235196LOC120095951uncharacterized LOC120095951122986393629869460Rat
41366922LOC120095952uncharacterized LOC120095952122988752429899402Rat
11363226LOC108352445uncharacterized LOC108352445122995068830009315Rat
2324513Mrpl23-ps1mitochondrial ribosomal protein L23, pseudogene 1123012462230125050Rat
7668786LOC102549552uncharacterized LOC102549552123014630830148665Rat
41213846LOC120095956uncharacterized LOC120095956123014922730154629Rat
11405284LOC108352488uncharacterized LOC108352488123018629430194578Rat
1592278Frg1-ps1FSHD region gene 1, pseudogene 1123026902130269933Rat
11493793LOC108352502uncharacterized LOC108352502123038801030409963Rat
40974416LOC120095960uncharacterized LOC120095960123068444330713892Rat
1566191Tmem132btransmembrane protein 132B123082983131093841Rat
41202940LOC120095961uncharacterized LOC120095961123099435430996878Rat
708522Aacsacetoacetyl-CoA synthetase123111309831156411Rat
1561711Bri3bpBri3 binding protein123117674231188563Rat
1306837Dhx37DEAH-box helicase 37123119478231214890Rat
11517466Trnaa-ugc3transfer RNA alanine (anticodon UGC) 3123122046331220534Rat
11440418Trnad-guc4transfer RNA aspartic acid (anticodon GUC) 4123122106331221134Rat
11367381Trnaf-gaa4transfer RNA phenylalanine (anticodon GAA) 4123122392631223998Rat
11425977Trnad-guc5transfer RNA aspartic acid (anticodon GUC) 5123122438131224452Rat
11373727Trnaa-ugc4transfer RNA alanine (anticodon UGC) 4123122569831225769Rat
621244Ubcubiquitin C123123914931243924Rat
2302Scarb1scavenger receptor class B, member 1123129614331362649Rat
41213561LOC120095963uncharacterized LOC120095963123136729531370732Rat
1310293Ncor2nuclear receptor co-repressor 2123146641831628319Rat
41017092LOC120095965uncharacterized LOC120095965123152405131528132Rat
1588777Rflnarefilin A123163336031642313Rat
7677226Zfp664zinc finger protein 664123176779231796038Rat
1561886Rpl27l5ribosomal protein L27 like 5123177986031780438Rat
1601131Ccdc92coiled-coil domain containing 92123179610231823333Rat
619988Dnah10dynein, axonemal, heavy chain 10123182345131946857Rat
9133337LOC103691347eukaryotic translation initiation factor 1 pseudogene123191454131914883Rat
41097782LOC120095966uncharacterized LOC120095966123194682131962475Rat
621006Atp6v0a2ATPase H+ transporting V0 subunit a2123194722031979875Rat
1591895Tctn2tectonic family member 2123198244032007242Rat
41257986Trnaa-agc44transfer RNA alanine (anticodon AGC) 44123199897931999059Rat
40970512Timm23-ps1translocase of inner mitochondrial membrane 23, pseudogene 1123200749732008787Rat
1305494Gtf2h3general transcription factor IIH subunit 3123200901032025484Rat
620819Eif2b1eukaryotic translation initiation factor 2B subunit alpha123202559332033848Rat
2324094Ddx55DEAD-box helicase 55123203446232050218Rat
69243Tmed2transmembrane p24 trafficking protein 2123205254232061628Rat
1307973Rilpl1Rab interacting lysosomal protein-like 1123207187032109687Rat
1310724Snrnp35small nuclear ribonucleoprotein U11/U12 subunit 35123211203232119829Rat
1303140Rilpl2Rab interacting lysosomal protein-like 2123212590832137426Rat
1587560Kmt5alysine methyltransferase 5A123213935332167777Rat
1310005Sbno1strawberry notch homolog 1123217517632234200Rat
1308664Cdk2ap1cyclin-dependent kinase 2 associated protein 1123224975232258483Rat
1563482Mtrfrmitochondrial translation release factor in rescue123226156932275258Rat
1598368Mphosph9M-phase phosphoprotein 9123227544932346097Rat
1310867Pitpnm2phosphatidylinositol transfer protein, membrane-associated 2123234745532479103Rat
1307657Arl6ip4ARF like GTPase 6 interacting protein 4123247962332481768Rat
1310594Ogfod22-oxoglutarate and iron-dependent oxygenase domain containing 2123248238632485688Rat
41316137LOC120096094U6 spliceosomal RNA123249059432490697Rat
620254Abcb9ATP binding cassette subfamily B member 9123249921332531932Rat
7543130LOC102552690uncharacterized LOC102552690123253546632560005Rat
1304576Vps37bVPS37B subunit of ESCRT-I123256004732589015Rat
621615Hip1rhuntingtin interacting protein 1 related123259016432618841Rat
1586391Ccdc62coiled-coil domain containing 62123262317032659912Rat
1584200Denrdensity regulated reinitiation and release factor123266251232685283Rat
1586364Hcar1hydroxycarboxylic acid receptor 1123271068032713934Rat
727952Hcar2hydroxycarboxylic acid receptor 2123272625232728238Rat
1307905Kntc1kinetochore associated 1123276902032839617Rat
1564882Rsrc2arginine and serine rich coiled-coil 2123283984032859820Rat
1309774Zcchc8zinc finger CCHC-type containing 8123286917032892707Rat
2323644LOC100359550protein S100-A11-like123290539632905803Rat
67404Clip1CAP-GLY domain containing linker protein 1123291093233017891Rat
41062965LOC120095846uncharacterized LOC120095846123296019532960798Rat
620643Vps33aVPS33A core subunit of CORVET and HOPS complexes123302459633051399Rat
1310885Diablodiablo, IAP-binding mitochondrial protein123305578433070401Rat
1309612B3gnt4UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4123307022133073904Rat
1561461Lrrc43leucine rich repeat containing 43123307414933092257Rat
1585183Il31interleukin 31123309510833105026Rat
1560774MlxipMLX interacting protein123312852433192300Rat
40933635LOC120096088U4 spliceosomal RNA123318341633183497Rat
1585128Bcl7aBAF chromatin remodeling complex subunit BCL7A123321197833243903Rat
41176598LOC120095967uncharacterized LOC120095967123324397233272229Rat
1564948Cfap251cilia and flagella associated protein 251123326162233337028Rat
41115357LOC120095968uncharacterized LOC120095968123332778933331332Rat
621110Psmd9proteasome 26S subunit, non-ATPase 9123333718233357468Rat
7586771LOC102547495uncharacterized LOC102547495123337397433381533Rat
61974Hpd4-hydroxyphenylpyruvate dioxygenase123338139733392750Rat
2323325Setd1bSET domain containing 1B, histone lysine methyltransferase123339596333421671Rat
1584038Rhofras homolog family member F, filopodia associated123342237533446689Rat
1584031Tmem120btransmembrane protein 120B123344744133487257Rat
1583094Rpl32-ps9ribosomal protein L32, pseudogene 9123349625333497041Rat
1583091Morn3MORN repeat containing 3123350565433529918Rat
1311873Orai1ORAI calcium release-activated calcium modulator 1123353315133548361Rat
7710500LOC102546488uncharacterized LOC102546488123354839733557605Rat
7734862Lraplocus regulating alcohol preference123356248233574339Rat
1310217Kdm2blysine demethylase 2B123356653033701366Rat
628636Rnf34ring finger protein 34123370365533724606Rat
40965160LOC120095970uncharacterized LOC120095970123372632133734720Rat
1306125Anapc5anaphase-promoting complex subunit 5123374870933781709Rat
620092Camkk2calcium/calmodulin-dependent protein kinase kinase 2123379102333845000Rat
41129989LOC120096090U4 spliceosomal RNA123381990433820064Rat
41132992LOC120095972uncharacterized LOC120095972123382624933828687Rat
62073P2rx4purinergic receptor P2X 4123384460933862265Rat
1598196Rpl32-ps11ribosomal protein L32, pseudogene 11123387057333873601Rat
3241P2rx7purinergic receptor P2X 7123388970933934168Rat
727862Ift81intraflagellar transport 81123395774434037164Rat
2174Atp2a2ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2123407271034122142Rat
1311927Anapc7anaphase promoting complex subunit 7123413121434160819Rat
2324823Rpl38-ps4ribosomal protein L38, pseudogene 4123414722234147659Rat
1311985Arpc3actin related protein 2/3 complex, subunit 3123417278034186651Rat
11445374LOC108352447uncharacterized LOC108352447123417499234179566Rat
41013557LOC120096106small nucleolar RNA SNORA67123418204634182188Rat
1303034Gpn3GPN-loop GTPase 3123418928534198251Rat
1310861Fam216afamily with sequence similarity 216, member A123419852634207673Rat
1308332Vps29VPS29 retromer complex component123420891134217977Rat
1308223Rad9bRAD9 checkpoint clamp component B123421786834248380Rat
1310383Pptc7protein phosphatase targeting COQ7123424996334288339Rat
11517723LOC108352448uncharacterized LOC108352448123426385534267760Rat
1566266Tctn1tectonic family member 1123430979534347190Rat
1310788Hvcn1hydrogen voltage-gated channel 1123434167334370010Rat
3377Ppp1ccprotein phosphatase 1 catalytic subunit gamma123438307234400553Rat
41376041LOC120095977uncharacterized LOC120095977123440810134424345Rat
1562334Ccdc63coiled-coil domain containing 63123442438834453080Rat
41142854LOC1200960785S ribosomal RNA123444480334444920Rat
1564245Myl2myosin light chain 2123445422334468554Rat
41282935LOC120095979uncharacterized LOC120095979123450251234507096Rat
1305967Cux2cut-like homeobox 2123450772334707581Rat
41239638LOC120095978uncharacterized LOC120095978123461097434614202Rat
1310656Pheta1PH domain containing endocytic trafficking adaptor 1123471183134717601Rat
68411Sh2b3SH2B adaptor protein 3123473193434753617Rat
1306637Atxn2ataxin 2123475413234851175Rat
41120407Fbxo22-ps1F-box protein 22, pseudogene 1123479768734808256Rat
1586551BrapBRCA1 associated protein123487453334901030Rat
1310159Acad10acyl-CoA dehydrogenase family, member 10123490121134943973Rat
69219Aldh2aldehyde dehydrogenase 2 family member123494954934982527Rat
1564113Mapkapk5MAPK activated protein kinase 5123499352035013059Rat
621467Adam1aADAM metallopeptidase domain 1a123501743335020300Rat
1596066Tmem116transmembrane protein 116123502191235089409Rat
2322512Adam1ba disintegrin and metallopeptidase domain 1b123503716135040574Rat
619781Erp29endoplasmic reticulum protein 29123508969835095952Rat
41049657LOC120095847uncharacterized LOC120095847123508986335094145Rat
1305685Naa25N(alpha)-acetyltransferase 25, NatB auxiliary subunit123509825635150498Rat
2320799LOC10036456140S ribosomal protein S27-like123513904935139517Rat
6500917LOC10090991140S ribosomal protein S20-like123515593435156460Rat
620171Trafd1TRAF type zinc finger domain containing 1123516560635179525Rat
1309762Hectd4HECT domain E3 ubiquitin protein ligase 4123518216535330935Rat
619826Rpl6ribosomal protein L6123534749335352011Rat
41368808LOC120096111small nucleolar RNA SNORA42/SNORA80 family123535131235351445Rat
3447Ptpn11protein tyrosine phosphatase, non-receptor type 11123536543635424925Rat
620073Rph3arabphilin 3A123554238935618901Rat
1359379Oas1i2 ' -5 ' oligoadenylate synthetase 1I123562456635636608Rat
1310349Oas1d2'-5' oligoadenylate synthetase 1D123564858335658037Rat
621760Oas1a2'-5' oligoadenylate synthetase 1A123566979835680505Rat
1359732Oas1h2 ' -5 ' oligoadenylate synthetase 1H123568286235695717Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10125DXMgh7230123381916733819400Ratregion
10888D12Wox1092122089438020894469Ratregion
11051D12Mit2217121961087019611091Ratregion
11052D12Wox11196121961088619611090Ratregion
11053D12Wox12198121961088919611095Ratregion
33955D1Mit22124123140994231410080Ratregion
34017D12Mit9142122184936621849508Ratregion
34246D12Mgh3118122423477724234895Ratregion
34417D12Mgh2163121983578919835952Ratregion
34729D12Mgh5132122806443328064557Ratregion
11449D12Wox14158122200342822003586Ratregion
11450D12Mgh12140122199658621996726Ratregion
11451D12Mgh13145122200341122003550Ratregion
36025D12Rat23154122413905724139202Ratregion
36101D12Rat15152122830212328302290Ratregion
36119D12Rat94265122905763229057901Ratregion
36125D12Rat14185122862266528622828Ratregion
36344D12Mit10121122363264523632770Ratregion
37250D12Rat26201122269248122692658Ratregion
37334D12Rat46142123039512130395279Ratregion
37346D12Rat27205122481210124812308Ratregion
35433D12Rat17149123082724630827399Ratregion
35479D12Rat8158122277945922779600Ratregion
36805D12Rat13170122482568624825856Ratregion
37830D12Rat36200123210317432103380Ratregion
37878D12Rat33221122114617721146418Ratregion
36490D12Rat18161123470242634702587Ratregion
36538D12Rat7161121994867819948839Ratregion
36755D12Rat11165122495666924956834Ratregion
36795D12Rat24174123237617132376345Ratregion
35126D12Rat16170123042710330427275Ratregion
35889D12Rat10155122367192823672083Ratregion
39626D12Rat75215122649713826497355Ratregion
39844D12Rat76109122830650928306601Ratregion
38084D12Rat96214123165732831657530Ratregion
38108D12Rat50244123395926833959512Ratregion
40454D12Rat100133123445246134452594Ratregion
40668D12Rat78216123088000030880206Ratregion
40702D12Rat69211121995043219950632Ratregion
38404D12Rat45248122515746025157706Ratregion
40112D12Rat84167123491883334919000Ratregion
40214D12Rat83158122663672426636867Ratregion
39060D12Rat30201123297403632974238Ratregion
39218D12Rat35200122291940222919596Ratregion
39236D12Rat51213122127306221273283Ratregion
39332D12Rat52181123531231335312458Ratregion
39446D12Rat99231122573546425735691Ratregion
41962D12Arb6290123568255935682913Ratregion
41962D12Arb6290123568255935682913Ratregion
41156D12Rat79221123508839935088624Ratregion
41384D12Rat70154121964216619642312Ratregion
41440D12Rat74137122492508824925229Ratregion
42965D12Rat92248122078029620780530Ratregion
42966D12Rat95203122964763529647846Ratregion
42967D12Rat106206123039001530390217Ratregion
42969D12Rat115215122408880524089002Ratregion
40766D12Rat77100123026526230265360Ratregion
40986D12Rat72309122196559521965906Ratregion
41626D12Rat93132122860752628607632Ratregion
41786D12Rat101106123481880234818908Ratregion
41826D12Rat107223123213485232135053Ratregion
44997D12Got78173123356343833563611Ratregion
44998D12Got79153123443701334437166Ratregion
45001D12Got70226123042706030427288Ratregion
44965D12Got40230121986903919869269Ratregion
44967D12Got41157121981117419811331Ratregion
44969D12Got102135122111996721120102Ratregion
44970D12Got45149122195186021952011Ratregion
44971D12Got46216122229720922297425Ratregion
44973D12Got103249122087451320874764Ratregion
44974D12Got48180122289624922896429Ratregion
44975D12Got49185122306034523060532Ratregion
44976D12Got47111122342739323427504Ratregion
44977D12Got50298122348574723486045Ratregion
44978D12Got51205122359346823593673Ratregion
44979D12Got55222122386746423867686Ratregion
44980D12Got58145122565246825652613Ratregion
44981D12Got67241122606235526062598Ratregion
44982D12Got57162122460575724605919Ratregion
44983D12Got104196122586210725862303Ratregion
44986D12Got68234122730481027305044Ratregion
44989D12Got64228122738629927386531Ratregion
44990D12Got61128122731252027312648Ratregion
44991D12Got73271123050685330507124Ratregion
44992D12Got71270123042700230427274Ratregion
44993D12Got72148123025202130252167Ratregion
44994D12Got74134122858850728588641Ratregion
60755D12Wox16142122701474427014890Ratregion
44995D12Got69184122918041829180602Ratregion
60019D12Got53166122564305025643216Ratregion
60020D12Got54136122524970125249837Ratregion
60021D12Got56179122565242725652606Ratregion
60022D12Got59187122614257626142765Ratregion
60023D12Got60285122632917826329463Ratregion
60024D12Got62266122678857326788836Ratregion
60025D12Got65197122796564827965847Ratregion
60026D12Got66298122773875427739052Ratregion
60028D12Got8089123528824235288330Ratregion
60029D12Got81192123555536635555558Ratregion
60031D12Got99172123091167830911850Ratregion
60012D12Got105128121966594319666071Ratregion
60016D12Got43159122021785420218013Ratregion
61278D12Arb5122806439628064601Ratregion
629606D12Hmgc2262122199672021996983Ratregion
67290D8Arb9204122200342122003625Ratregion
67356D12Arb15202122195183521952039Ratregion
1630268D12Cebr1239122744705827447299Ratregion
1629328D12Got217284122191328221913563Ratregion
1629355D12Mco40123082719930827395Ratregion
1629647D12Got220119122088154520881664Ratregion
1640906D12Got212221122500046925000690Ratregion
1632605D12Got211125122479240024792525Ratregion
1637896D12Uia3216122315654923156765Ratregion
1634514D12Got214178123522520535225385Ratregion
7192219Fzd9487122142886621429353Ratregion
7193095AA957504192122056484220565034Ratregion
8693216rs106542192123365099633650996Ratregion
7206280Ptpn11148123539186935392434Ratregion
5035885PMC280674P1715123188636531887080Ratregion
5038888RH127390196123305100733051203Ratregion
5038936RH127418190122679902626799216Ratregion
5038976RH127441189122055290720553096Ratregion
7206382fj36f03.x10122881822228819087Ratregion
7206766ha30420123188460831885786Ratregion
5036330Gus-s235122670411126704346Ratregion
5036352Hsp25216122079414120794468Ratregion
5039228RH127586215122173407821734293Ratregion
5039228RH127586215122173408021734293Ratregion
5036825AU049323184122858849228588675Ratregion
5037007AU049899204122300008223000286Ratregion
5037065D12S2026337123412177934122116Ratregion
5035498AW533080180123525845135258631Ratregion
5035701WI-1509899122051691720517016Ratregion
5033885RH140486172123121453531214707Ratregion
5033931RH140659187122499762124997806Ratregion
5033941RH140698187123432991534330102Ratregion
5033987RH140921192122581193825812174Ratregion
5026010RH130563215123133877531338990Ratregion
5028621RH118296196123293523132935427Ratregion
7206126UniSTS:532167946123524989035250836Ratregion
7206190Eln141122201023522011026Ratregion
7206212Hspb1408122079427720795457Ratregion
5034029RH141085192122694904626949238Ratregion
5034101RH141366180122685334026853520Ratregion
5034155RH141576216122477579624776012Ratregion
5034159RH141592185123194727731947462Ratregion
5028833RH142503121123434526134345382Ratregion
5034199RH141742194123258741032587604Ratregion
5034249RH1419280122248151622481698Ratregion
5034337Ncf1165122249271622493032Ratregion
5034337Ncf1165122249271622493032Ratregion
5029061RH143368159122509509525095254Ratregion
5034339Fkbp6481122132920421329685Ratregion
5034383D16S505794122717202927172147Ratregion
5034402BE117132150122243066822430818Ratregion
5032014AU046360137122042936920429506Ratregion
5034666BF390887174122898741828987592Ratregion
5026638RH1329730122211792622118098Ratregion
5026664RH133068206122011796220118168Ratregion
5029387RH144598150123521857635218726Ratregion
5026898RH133958187123534765135348064Ratregion
5026902RH133976195123418246834182663Ratregion
5032211D84372133123542147635421609Ratregion
5035126AI548127209122161164921611858Ratregion
5027036RH134486198123200924232009439Ratregion
5029655AI711004185122684951226849697Ratregion
5032495D5Ertd355e248122209962022099868Ratregion
5035356AW529993150123424817934248329Ratregion
5029871BE097070160122792678927926949Ratregion
5027301AW544490124123475453834754662Ratregion
5027303AW049835110123420941234209522Ratregion
5027305AV006093134122691185726911991Ratregion
5027307AI957187130122063042920630559Ratregion
5035192BG381331154122780571927805873Ratregion
5035208BM390639203122089592320896126Ratregion
5030109BE098443174122077106320771237Ratregion
5030123BE098792203123162805031628253Ratregion
5030179BF395959124123198649931986623Ratregion
5025008C85851106122581934525819451Ratregion
5025010AU022494218122064331020643528Ratregion
5027595AI46224399122168170321681802Ratregion
5033069RH137475203122652315426523357Ratregion
5030445BE106487158123326166433261822Ratregion
5030479BF403268212123434263234342844Ratregion
5033235RH138082125122519268025192895Ratregion
5033235RH138082125122519277025192895Ratregion
5033301RH138330157123393849833938643Ratregion
5025306RH127813210122389445123894659Ratregion
5025422RH1282540122209948422099712Ratregion
8693404rs64151264122308134023081340Ratregion
5030615BE107127158122151999821520156Ratregion
5025546RH128738156122161450021614656Ratregion
5030821BE120393170122832882428328994Ratregion
5030825BE120455158123441077734410935Ratregion
5033617RH139480197122642499126425188Ratregion
5028257D5Mit118157123420598134206142Ratregion
5028259D5Mit27213122670411326704326Ratregion
5030945BF399653145122687040326870548Ratregion
5033783RH140105189122704038127040570Ratregion
5025864RH129983150123568035135680501Ratregion
5025864RH129983150123568035135680501Ratregion
5028452AA987064163122908225829082421Ratregion
5031079BE115872151122518931025189461Ratregion
5031143AA925036117123370096133701078Ratregion
5031165BE116737176122114569821145874Ratregion
5051837RH94687119122769916627699285Ratregion
5052071RH94823255122683858826838843Ratregion
5052075RH94825207123542146435421671Ratregion
5055147RH143632261123266502832665289Ratregion
5051170RH134480188123136236031362548Ratregion
5051170RH134480188123136236031362548Ratregion
5053695RH142798101122694438726944488Ratregion
5056311RH144305102122429058624290688Ratregion
5051537AU015798189122389437023894559Ratregion
5053745RH142826173123213784332138016Ratregion
5053831RH142876162121972227819722440Ratregion
5054003RH142974126123342967633429802Ratregion
5056877RH144632157123242672032426877Ratregion
5056941RH144669170122062949720629667Ratregion
5051835RH94685217122201132822011545Ratregion
5054195RH143085251122243266522432916Ratregion
5057524AW522797179121973677219736951Ratregion
5055321RH143734122122650438726504509Ratregion
5054439RH143225134122436416524364299Ratregion
5059396AW530578166123246621432466380Ratregion
5059512BE097146152122539428225394434Ratregion
5055597RH143892132123413133334131477Ratregion
5055615RH143903170123424872134248891Ratregion
5054907RH143493136123393000933930145Ratregion
5055031RH143566222122581515625815378Ratregion
5057906BI277291215122154368221543897Ratregion
5058000BF386435194122781103127811225Ratregion
5058592BE102132180122960165729601840Ratregion
5058666BE102291152123245279732452949Ratregion
5058690BE096988180122682919426829373Ratregion
5056395RH144353115123379317133793286Ratregion
5058712BE102361150122465170024651850Ratregion
5058760BF387056170122482803524828205Ratregion
5059566BE097301153122234935922349512Ratregion
5056693RH144525169122170964021709809Ratregion
5056977RH144689176123117276731172943Ratregion
5058056BF386509150122082571220825862Ratregion
5058858BF393753115122828419028284305Ratregion
5052573RH125644234123205257932052813Ratregion
5052777RH142267176121969243419692767Ratregion
5058924BF387255151123427724034277391Ratregion
5059022BF387385184123204520432045388Ratregion
5052815RH142289151122206042222060573Ratregion
5052877RH142325199121970860219708801Ratregion
5053073RH142438176122089429520894468Ratregion
5059878BI279065181123203352232033703Ratregion
5059892BF388151181123502006935020250Ratregion
5060032BF388305150122666139926661549Ratregion
5058324BF41930790123352979933529889Ratregion
5049856RH133721207122633214226332349Ratregion
5052309R75209169122519176025191929Ratregion
5053171RH142495102122487526924875371Ratregion
5053175RH142497109122707670327076812Ratregion
5053231RH142529112122672563426725746Ratregion
5053231RH142529112122672563426725746Ratregion
5058378BG37680094122876253828762632Ratregion
5059120BI278447163123498229934982460Ratregion
5059252BF387881158122686558126865739Ratregion
5057636BF392370170123243851232438682Ratregion
5057674BE101305210122063109820631323Ratregion
5057830BF386235218122463749924637718Ratregion
5050534RH134112168123258881732588985Ratregion
5050706RH134211220123503467235034892Ratregion
5053795RH142855128122494986724949995Ratregion
5049902RH133748184122748904727489231Ratregion
5050030RH133822180122072445920724639Ratregion
5050078RH133849206123301664833016854Ratregion
5050998RH134379214123124532831245542Ratregion
5051014RH134388193122054331420544059Ratregion
5053021RH142408193122077129820771491Ratregion
5051397AW554476125123305042433050549Ratregion
5051399AW22870094123312865433128748Ratregion
5051403AW21207994122710973927109833Ratregion
5054217RH143097179123471470634714885Ratregion
5053113RH142461223122043796120438184Ratregion
5054575RH143303219123284018832840407Ratregion
5054853RH143463195122640914426409339Ratregion
5051038RH134402192122687265826872850Ratregion
5041758RH129042197122690485526905052Ratregion
5041840RH129089153122049162220491775Ratregion
5043946RH130322189122064332520643514Ratregion
5043946RH130322189122064332520643514Ratregion
5044038RH130374192123563623735636429Ratregion
5044092RH130405184122052007820520262Ratregion
5043520RH130072150122671449526714645Ratregion
5043588RH130111182122040972020409902Ratregion
5043740RH130200196122642933926429535Ratregion
5044998RH130924195122063324720633442Ratregion
5045148RH131011183123517927135179454Ratregion
5045350RH131127213123433959734339817Ratregion
5045390RH131150198122063030020630498Ratregion
5045534RH131233196123123484331235039Ratregion
5041500RH128892212123301747033017682Ratregion
5041628RH128966181122643082826431009Ratregion
5043960RH130330167123420744134207608Ratregion
5044050RH130381196122707446327074659Ratregion
5045720RH131340211123247889032479101Ratregion
5045820RH131397206122771439327714599Ratregion
5044252RH130496189122129430721294496Ratregion
5047542RH132387210123384155233841762Ratregion
5045994RH131498201122578095925781160Ratregion
5047584RH132412182123561865135618833Ratregion
5047584RH132412182123561865135618833Ratregion
5048884RH133161208122126428421264492Ratregion
5045830RH131403181122642483226425013Ratregion
5049222RH133356196122212064622120840Ratregion
5045912RH131450194123494334634943540Ratregion
5048172RH132750204121966882219669213Ratregion
5047040RH132099186123289244332892629Ratregion
5047170RH132174220122054270220543016Ratregion
5039492RH127736213122089444920894990Ratregion
5039496RH127739195123225865632258851Ratregion
5041982RH129170158123471187734712517Ratregion
5042060RH1292150123223466332234860Ratregion
5047264RH132227181123234577732345958Ratregion
5048412RH132889186122071847020718656Ratregion
5042866RH1296920121961138519611585Ratregion
5041964RH129160197123111310531113303Ratregion
5042216RH129307198123509564035095838Ratregion
5040500RH128319191123370387333704064Ratregion
5040162RH128125209122126731721267526Ratregion
7192204Fzd10179122142856621428745Ratregion
5042616RH129542194123487457334874767Ratregion
5042714RH129601215123266256132662776Ratregion
5041048RH128633220123509517035095838Ratregion
5041094RH128659184123542467935424863Ratregion
5041176RH128706151123388976133889912Ratregion
5043680RH130165201123434050334340704Ratregion
5040586RH128368216122118577921185995Ratregion
5042942RH129737159122079408320794242Ratregion
5072604RH136945202122654460826544810Ratregion
5072734RH137022169123424970834249877Ratregion
5075082RH138388172123416050934160681Ratregion
5072086RH136643184122767417327674357Ratregion
5075452RH138602130122247459322475256Ratregion
5075482RH138619128122162835221628480Ratregion
5075594RH138684124122694163726941761Ratregion
5072420RH136839227122911658229116809Ratregion
5072488RH136879157122175307421753231Ratregion
5076014RH138929192123248382232484014Ratregion
5076326RH139111134123393000833930142Ratregion
5076376RH139139184121976060319760787Ratregion
5076558RH139246236122173407821734314Ratregion
5076558RH139246236122173408021734314Ratregion
5074698RH138167126123182286831822995Ratregion
5076630RH139287223122084514020845363Ratregion
5076680RH139316170123258822132588391Ratregion
5075534RH138649165122688209826882263Ratregion
5075888RH138855217122249319322493410Ratregion
5075888RH138855217122249319322493410Ratregion
5074846RH138252196122908339329083591Ratregion
5076124RH138993214123402637634026590Ratregion
5075656RH138720122122685357226853694Ratregion
5079492RH141029193123339247233392665Ratregion
5076702RH139329123123501246435012930Ratregion
5079586RH141086211123470728134707492Ratregion
5077120RH139572218123117162531171843Ratregion
5077140RH139585207122042537620425583Ratregion
5077368RH139716192123333927433339466Ratregion
5076398RH139152186122221546122215647Ratregion
5076446RH139180139123321338633213525Ratregion
5077448RH139762188122170869021708878Ratregion
5077942RH140050185122412847924128664Ratregion
5078542RH140404143123117162531171768Ratregion
5080034RH141345206122509680825097014Ratregion
5078298RH140259199122227872422278923Ratregion
5078598RH14043691123352980433529895Ratregion
5079140RH140758133122168247121682858Ratregion
5079176RH140780182123266267632662858Ratregion
5070646RH134623186122164043221640618Ratregion
5073154RH137270199122077129120771490Ratregion
5071224RH134959188122130086021301048Ratregion
5073654RH137562247122222672922226976Ratregion
5072872RH137103185123312857633128761Ratregion
5072874RH137104201122691181426912015Ratregion
5071652RH135206191122662406226624253Ratregion
5073316RH137366190123384464333844833Ratregion
5073340RH137380150123203450632034656Ratregion
5071830RH135309202122117085121171053Ratregion
5071904RH135352195123117706231177257Ratregion
5071524RH135132182122712954827130794Ratregion
5071528RH135134220122251989022520110Ratregion
5073564RH137509217123476196134762178Ratregion
5072234RH136731142122103984321039985Ratregion
5071572RH135160211122652800526528216Ratregion
5071600RH135176180122048822720488407Ratregion
5071766RH135272186123564876235648948Ratregion
5061782AW533444153122922127729221430Ratregion
5064982BE108813170123210450332104673Ratregion
5064992BE108855163122418130024181463Ratregion
5065118BF405946194122713192527132119Ratregion
5066976AU048039163122523725025237413Ratregion
5067020AU048013176122558580025585976Ratregion
5067026AU048009127123029517330295300Ratregion
5067328AU047820202122829406428294266Ratregion
5067440AU047743166122031501620315182Ratregion
5067446AU047739171122265164822651813Ratregion
5067470AU047724238123386776033867998Ratregion
5067578AU047661128122919341129193541Ratregion
5067606AU047644180122342559823425778Ratregion
5067608AU047633193122342559823425791Ratregion
5067610AU047642165122919340529193572Ratregion
5067688AU047595111122512240925122520Ratregion
5068292AU047234131122661349726613622Ratregion
5068616AU047037210122116606721166275Ratregion
5068860AU046881284123435041334350692Ratregion
5069036AU046764158122640668826406846Ratregion
5070281RH94577178121961122919611407Ratregion
5069284AU046599190122208180822081993Ratregion
5061906BI294189190122649269326492883Ratregion
5063564BI289921203123230413432304337Ratregion
5060418BE110007168123170048831700656Ratregion
5060600BE110558180122518375325183933Ratregion
5060624BE110694159123446102234461180Ratregion
5062286BF403047149123504167135041820Ratregion
5062302BI288626185122213881522139000Ratregion
5063790AW535181183122231174822311931Ratregion
5063954AW535897169122519388825194061Ratregion
5063976BE120355168122040815620408325Ratregion
5065484BF412251116122478516124785277Ratregion
5065682BF41274694122028856420288658Ratregion
5060954BF389547143123014645930146602Ratregion
5062594BE106902162123383902033839182Ratregion
5064398BF411168226122033705820337284Ratregion
5065922BE116124212122911524129115453Ratregion
5062016BI294736218123272763832727856Ratregion
5062052BI294823189123527998535280174Ratregion
5062110BF397463207122165643321656907Ratregion
5063774AW535146159122151899021519149Ratregion
5065400AA95750490122056478220564872Ratregion
5065460BF412122151123417919934179350Ratregion
5060602BE110564160123194957631949736Ratregion
5062190BF397544204123306576433065968Ratregion
5064116BE120626157122513205425132212Ratregion
5065492BI303226201122768668027686881Ratregion
5065702BF406235157122883729128837448Ratregion
5064324AW529994209122154163221541841Ratregion
5064386BF399187219122781094827811167Ratregion
5065896AA964673117122126528921265406Ratregion
5065990BE116442175123383493533835110Ratregion
5066040AA925378207122908971429089921Ratregion
5061024BF389756218122081645220816670Ratregion
5061170BE099159165121976230319762468Ratregion
5064686BE108318191122495347224953663Ratregion
5066402AU048378133122165014821650283Ratregion
5061348BF396285123123339607133396194Ratregion
5061466BE105245151122794605527946206Ratregion
5063204BF410495116123009374230093861Ratregion
5066450AU048349132123402023234020366Ratregion
5066494AU048323126122657521426575340Ratregion
5066570AU048279137122335834823358485Ratregion
5084352AA945300202123509832435098526Ratregion
5086066AW529466165122142975021429915Ratregion
5086363AA874832191123378147633781667Ratregion
5086377BQ205524202122336094623361148Ratregion
5087114AI511394150122211828922118439Ratregion
5082929BF390440164122794531627945480Ratregion
5082979BF390551160122111409721114257Ratregion
5087446PMC180925P1753122095603620956789Ratregion
5089147AU048982137122460577824605915Ratregion
5088269AU048467127123031755430317681Ratregion
5088275AU048471145122630473226304877Ratregion
5089283AU049064185122606235026062537Ratregion
5089401AU049134152123568274335682895Ratregion
5089401AU049134152123568274335682895Ratregion
5083337BF417900202122076495320765155Ratregion
5083619BI276461171123333881633338991Ratregion
5088299AU048487168122079838820799310Ratregion
5088299AU048487168122079914220799310Ratregion
5088305AU048490237123127772531277962Ratregion
5090807AU049974208122017595020176158Ratregion
5083691BG375003121122827291428273035Ratregion
5088655AU048698165122220861222208776Ratregion
5088655AU048698165122220861222209459Ratregion
5088827AU048794232122116014721160379Ratregion
5089587AU04924498122904332929043427Ratregion
5089613AU049259269122998086329981132Ratregion
5089619AU049263194122408882824089022Ratregion
5089627AU049267158122689174026891898Ratregion
5090467AU049767193122326311323263306Ratregion
5090515AU049797289122365538623655675Ratregion
5081457Fzd9269122142861721428886Ratregion
5081461UniSTS:230793351122205904822059399Ratregion
5090105AU049553203123198992231990125Ratregion
5087171BQ207717197123442993834430135Ratregion
5082125BF409796221123402809734028318Ratregion
5088143Baz1b121122148981621489937Ratregion
5082163BI280199151121963525119635402Ratregion
5082331BI274506161122197926321979424Ratregion
5082421BE119354170122590602025906190Ratregion
5082437BI274753205122247585722476062Ratregion
5088259AU048461162122287962622879788Ratregion
5085092AW533191151122737516627375317Ratregion
5085345BE100612165122257990922580081Ratregion
5090417AU049738129122532098125321110Ratregion
5090531AU049807198123508392535084125Ratregion
5088717AU048735193122946698329467176Ratregion
5085387BM390241201123216447932164680Ratregion
5085537BE097726203122598870325988906Ratregion
5085760BM390895181123262837032628551Ratregion
5080714RH141739183122908215229082335Ratregion
5080924RH141862199123194916231949361Ratregion
5081258RH142057192122052421920524411Ratregion
5084786AI171447119122704057727040696Ratregion
5083203BI275304166123222969532229861Ratregion
5083203BI275304166123222969532229861Ratregion
5083365AA818673142122667674026677034Ratregion
5086572BE114476157122505617025056327Ratregion
5081414AI502108184123425075434250938Ratregion
5081459UniSTS:230791255122142863121428886Ratregion
5086787BE107332214122051587620516090Ratregion
5085709BE101960176122081933920819515Ratregion
5085736BF388086155123256131532561470Ratregion
5085800BF388132200122148408021484280Ratregion
5085828BF388170183123522322435223407Ratregion
5086034BM383880189122345327223453461Ratregion
5503072Sbds161122642055326421639Ratregion
5502989D5Dcr13141122188159321881734Ratregion
5503867SSC3D06197122077254720772744Ratregion
5507648Eln698122198622321986921Ratregion
5503613Cldn3660122170891021709570Ratregion
5504819ha2178866122438816024389026Ratregion
5504869ha27170123126613931267576Ratregion
5505879UniSTS:49598892122810014028100232Ratregion
5505919Mmp1795122708836427088459Ratregion
5506193UniSTS:498764430122796486227965292Ratregion
5506270GDB:458569784122054586220545946Ratregion
5506288STS-Z413780122834094528341480Ratregion
5506729G44856274123428446934284743Ratregion
5507319G48114154122206037922060533Ratregion
5499595Wbscr1215122209751722098178Ratregion
5499633MARC_5817-5818:991939742:3300122948832129488621Ratregion
5499605MARC_2373-2374:991932707:1334123475445034755580Ratregion
5499597Wbscr14147122154414321545203Ratregion
5499663MARC_6945-6946:992007577:2582122094952920950111Ratregion
5499837UniSTS:234929717123285697132857688Ratregion
5499899UniSTS:235344206121963543119635637Ratregion
5502733RSRC2168123285696632857134Ratregion
5503095ASL204122667516726675631Ratregion
5500713RH911941560122119362221195182Ratregion
5500847G15902192123411886734119059Ratregion
5500408GDB:45513084123338655033386634Ratregion
5500875D5S5031483122138140521382889Ratregion
5501922MARC_17487-17488:1030377680:10123478863334790159Ratregion
5502313RH1244050123339714833397359Ratregion
5502345RH124557175123205257232052747Ratregion
5502609RH12552482122389537023895452Ratregion
5502875Fzd10838122810022528101063Ratregion
5502475RH125009259122387715623877415Ratregion
11529999rs197969186122087341920873419Ratregion
11529998rs196994347122103096521030965Ratregion
11530000rs197046678122134674021346740Ratregion
Position Markers

Flank 1: (D12Wox12)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21219,610,889 - 19,611,095 (+)MAPPER
Rnor_6.01222,650,721 - 22,650,922NCBI
Rnor_5.01224,663,002 - 24,663,203UniSTS
RGSC_v3.41220,932,556 - 20,932,757UniSTS
RGSC_v3.41220,932,555 - 20,932,757RGD
RGSC_v3.11220,922,167 - 20,922,369RGD
Celera1221,386,649 - 21,386,850UniSTS
RH 3.4 Map12277.5UniSTS
RH 3.4 Map12277.5RGD
RH 2.0 Map12197.1RGD
Cytogenetic Map12q11-q12UniSTS
Peak: (D12Wox12)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21219,610,889 - 19,611,095 (+)MAPPER
Rnor_6.01222,650,721 - 22,650,922NCBI
Rnor_5.01224,663,002 - 24,663,203UniSTS
RGSC_v3.41220,932,556 - 20,932,757UniSTS
RGSC_v3.41220,932,555 - 20,932,757RGD
RGSC_v3.11220,922,167 - 20,922,369RGD
Celera1221,386,649 - 21,386,850UniSTS
RH 3.4 Map12277.5UniSTS
RH 3.4 Map12277.5RGD
RH 2.0 Map12197.1RGD
Cytogenetic Map12q11-q12UniSTS
Flank 2: (D12Arb6)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21235,682,559 - 35,682,913 (+)MAPPER
mRatBN7.21235,682,559 - 35,682,913 (-)MAPPER
Rnor_6.01241,291,378 - 41,291,738NCBI
Rnor_6.01241,213,448 - 41,213,801NCBI
Rnor_5.01243,150,549 - 43,150,909UniSTS
RGSC_v3.41236,818,780 - 36,819,134RGD
RGSC_v3.41236,894,446 - 36,894,750RGD
RGSC_v3.41236,818,781 - 36,819,134UniSTS
RGSC_v3.41236,894,447 - 36,894,750UniSTS
RGSC_v3.11236,757,835 - 36,758,138RGD
Celera1237,422,909 - 37,423,212UniSTS
Celera1237,346,026 - 37,346,376UniSTS
RH 3.4 Map12618.9UniSTS
RH 3.4 Map12618.9RGD
RH 2.0 Map12466.8RGD
SHRSP x BN Map1244.35RGD
Cytogenetic Map12 RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
61443Btemp2Thermal response to stress QTL 23.30.000094body temperature trait (VT:0005535)core body temperature (CMO:0001036)121502518320794014Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122308134044726024Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122413920236638073Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)122806443346669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
1556747Calcic1Intracellular calcium level QTL 13.6platelet calcium amount (VT:0010500)platelet intracellular calcium level (CMO:0000922)122806443340130419Rat
631829Alc6Alcohol consumption QTL 64.7consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)122860752637691617Rat
8693658Alc33Alcohol consumption QTL 332.10.68drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122308134043551788Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)122423477731894213Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961088935682913Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
11530002Bss119Bone structure and strength QTL 11916.394e-17lumbar vertebra area (VT:0010570)lumbar vertebra area (CMO:0001688)122087341921346740Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382528064557Rat
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121983578938193007Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)121961087024139202Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123210317445899022Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)122806443345899022Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121107382524234895Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)122806455740218380Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121363552330827399Rat
631521Pia12Pristane induced arthritis QTL 128.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)122025941723672083Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12136247923Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Cia25

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_disease involved in regulating mean arthritis scores and severity during mid-to-late disease course 1285224
qtl_gene whole genome analysis using PGMapper revealed Ncf1 as RA associated gene and Ncf1 as RA associated polymorphism either in coding or regulatory region 2300074
qtl_gene 471 known and 117 novel genes were found in an analysis based on PubMed and OMIM data 2307198
qtl_general female-specific arthritis-severity recessive locus in which maximum LOD was observed on day 28 1285224