Clip1 (CAP-GLY domain containing linker protein 1) - Rat Genome Database

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Gene: Clip1 (CAP-GLY domain containing linker protein 1) Rattus norvegicus
Analyze
Symbol: Clip1
Name: CAP-GLY domain containing linker protein 1
RGD ID: 67404
Description: Enables microtubule plus-end binding activity. Involved in positive regulation of dendrite development. Located in cytoplasmic microtubule and microtubule plus-end. Orthologous to human CLIP1 (CAP-Gly domain containing linker protein 1); PARTICIPATES IN mTOR signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 4-amino-2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: CAP-Gly domain-containing linker protein 1; CLIP-170; cytoplasmic linker protein 170; MGC114234; restin; restin (Reed-Steinberg cell-espressed intermediate filament-associated protein); Restin (Reed-Steinberg cell-expressed intermediate filament-associated protein); Rsn
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21232,910,932 - 33,017,891 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)Ensembl
Rnor_6.01238,345,203 - 38,452,650 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1238,345,456 - 38,452,652 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01240,226,364 - 40,333,749 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41234,049,773 - 34,155,531 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11233,913,160 - 34,018,914 (+)NCBI
Celera1234,596,440 - 34,702,275 (+)NCBICelera
Cytogenetic Map12q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
acrolein  (ISO)
acrylamide  (EXP)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bilirubin IXalpha  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium dichloride  (EXP)
chloroprene  (EXP,ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
clorgyline  (ISO)
cobalt dichloride  (EXP)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclophosphamide  (EXP)
cyclosporin A  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
ethanol  (ISO)
finasteride  (EXP)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
gallic acid  (ISO)
geldanamycin  (ISO)
gentamycin  (EXP)
hexadecanoic acid  (ISO)
isoprenaline  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
menadione  (ISO)
methamphetamine  (EXP,ISO)
methapyrilene  (EXP)
methylmercury chloride  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
nimesulide  (EXP)
ozone  (ISO)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorononanoic acid  (ISO)
phenobarbital  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
tetrahydropalmatine  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:12433698   PMID:12477932   PMID:15262990   PMID:16148041   PMID:16247022   PMID:16954346   PMID:17828275   PMID:17828277   PMID:17889670   PMID:18511518   PMID:18854161   PMID:19004523  
PMID:19687009   PMID:21273437   PMID:21399614   PMID:26506308  


Genomics

Comparative Map Data
Clip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21232,910,932 - 33,017,891 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)Ensembl
Rnor_6.01238,345,203 - 38,452,650 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1238,345,456 - 38,452,652 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01240,226,364 - 40,333,749 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41234,049,773 - 34,155,531 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11233,913,160 - 34,018,914 (+)NCBI
Celera1234,596,440 - 34,702,275 (+)NCBICelera
Cytogenetic Map12q16NCBI
CLIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12122,271,432 - 122,422,669 (-)EnsemblGRCh38hg38GRCh38
GRCh3812122,271,432 - 122,422,956 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712122,756,016 - 122,907,216 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612121,321,934 - 121,473,069 (-)NCBINCBI36hg18NCBI36
Build 3412121,280,860 - 121,431,996NCBI
Celera12122,346,248 - 122,498,975 (-)NCBI
Cytogenetic Map12q24.31NCBI
HuRef12119,716,905 - 119,868,164 (-)NCBIHuRef
CHM1_112122,724,274 - 122,875,405 (-)NCBICHM1_1
Clip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395123,715,857 - 123,822,527 (-)NCBIGRCm39mm39
GRCm39 Ensembl5123,715,858 - 123,822,681 (-)Ensembl
GRCm385123,577,794 - 123,684,606 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5123,577,795 - 123,684,618 (-)EnsemblGRCm38mm10GRCm38
MGSCv375124,029,079 - 124,134,300 (-)NCBIGRCm37mm9NCBIm37
MGSCv365123,839,688 - 123,944,915 (-)NCBImm8
Celera5120,653,293 - 120,732,591 (-)NCBICelera
Cytogenetic Map5FNCBI
Clip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554826,244,752 - 6,330,978 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554826,213,363 - 6,330,601 (+)NCBIChiLan1.0ChiLan1.0
CLIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112123,241,049 - 123,392,069 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12123,242,489 - 123,348,540 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012119,873,105 - 120,024,222 (-)NCBIMhudiblu_PPA_v0panPan3
CLIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1266,979,685 - 7,087,914 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl266,996,340 - 7,087,731 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha267,123,914 - 7,248,095 (+)NCBI
ROS_Cfam_1.0267,215,194 - 7,339,394 (+)NCBI
UMICH_Zoey_3.1267,145,842 - 7,271,532 (+)NCBI
UNSW_CanFamBas_1.0267,238,425 - 7,362,525 (+)NCBI
UU_Cfam_GSD_1.0267,193,979 - 7,318,170 (+)NCBI
Clip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118157,254,519 - 157,369,858 (-)NCBI
SpeTri2.0NW_0049365582,109,569 - 2,224,907 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1430,320,958 - 30,467,686 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11430,320,870 - 30,467,095 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21432,126,533 - 32,195,050 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111117,621,047 - 117,775,717 (-)NCBI
ChlSab1.1 Ensembl11117,620,949 - 117,729,506 (-)Ensembl
Vero_WHO_p1.0NW_023666037127,581,928 - 127,709,244 (+)NCBI
Clip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474722,481,304 - 22,596,779 (-)NCBI

Position Markers
D12Rat30  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21232,974,036 - 32,974,238 (+)MAPPERmRatBN7.2
Rnor_6.01238,408,800 - 38,409,001NCBIRnor6.0
Rnor_5.01240,289,899 - 40,290,100UniSTSRnor5.0
RGSC_v3.41234,112,589 - 34,112,949RGDRGSC3.4
RGSC_v3.41234,112,682 - 34,112,883UniSTSRGSC3.4
RGSC_v3.11233,976,070 - 33,976,271RGD
Celera1234,659,399 - 34,659,602UniSTS
RH 3.4 Map12585.8UniSTS
RH 3.4 Map12585.8RGD
SHRSP x BN Map1242.1099UniSTS
SHRSP x BN Map1242.1099RGD
Cytogenetic Map12q15UniSTS
RH118296  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21232,935,231 - 32,935,427 (+)MAPPERmRatBN7.2
Rnor_6.01238,369,986 - 38,370,181NCBIRnor6.0
Rnor_5.01240,251,109 - 40,251,304UniSTSRnor5.0
RGSC_v3.41234,073,686 - 34,073,881UniSTSRGSC3.4
Celera1234,620,608 - 34,620,803UniSTS
Cytogenetic Map12q15UniSTS
RH133849  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21233,016,648 - 33,016,854 (+)MAPPERmRatBN7.2
Rnor_6.01238,451,408 - 38,451,613NCBIRnor6.0
Rnor_5.01240,332,507 - 40,332,712UniSTSRnor5.0
RGSC_v3.41234,155,273 - 34,155,478UniSTSRGSC3.4
Celera1234,702,017 - 34,702,222UniSTS
RH 3.4 Map12593.8UniSTS
Cytogenetic Map12q15UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961088935682913Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121983578938193007Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122413920236638073Rat
1556747Calcic1Intracellular calcium level QTL 13.6platelet calcium amount (VT:0010500)platelet intracellular calcium level (CMO:0000922)122806443340130419Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)122806443345899022Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)122806443346669029Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)122806455740218380Rat
631829Alc6Alcohol consumption QTL 64.7consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)122860752637691617Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123210317445899022Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:66
Count of miRNA genes:53
Interacting mature miRNAs:60
Transcripts:ENSRNOT00000001685
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 47 31 19 31 8 11 74 35 41 11 8
Low 10 10 10
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ237670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY829000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC097264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M99613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000001685   ⟹   ENSRNOP00000001685
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,910,991 - 33,016,902 (+)Ensembl
Rnor_6.0 Ensembl1238,345,456 - 38,451,661 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000078530   ⟹   ENSRNOP00000072766
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,910,991 - 33,016,902 (+)Ensembl
Rnor_6.0 Ensembl1238,375,416 - 38,451,226 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000083261   ⟹   ENSRNOP00000068884
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,933,939 - 32,951,906 (+)Ensembl
Rnor_6.0 Ensembl1238,368,693 - 38,386,653 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000088002   ⟹   ENSRNOP00000073711
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,943,745 - 33,017,884 (+)Ensembl
Rnor_6.0 Ensembl1238,377,034 - 38,452,652 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096011   ⟹   ENSRNOP00000090148
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098458   ⟹   ENSRNOP00000093783
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102474   ⟹   ENSRNOP00000079550
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105301   ⟹   ENSRNOP00000092485
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105680   ⟹   ENSRNOP00000093663
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110644   ⟹   ENSRNOP00000087368
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)Ensembl
RefSeq Acc Id: NM_031745   ⟹   NP_113933
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,910,991 - 33,016,907 (+)NCBI
Rnor_6.01238,345,456 - 38,451,666 (+)NCBI
Rnor_5.01240,226,364 - 40,333,749 (+)NCBI
RGSC_v3.41234,049,773 - 34,155,531 (+)RGD
Celera1234,596,440 - 34,702,275 (+)RGD
Sequence:
RefSeq Acc Id: XM_006249354   ⟹   XP_006249416
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
Rnor_6.01238,345,203 - 38,452,650 (+)NCBI
Rnor_5.01240,226,364 - 40,333,749 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769251   ⟹   XP_008767473
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
Rnor_6.01238,345,203 - 38,452,650 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769256   ⟹   XP_008767478
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
Rnor_6.01238,345,203 - 38,452,650 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769257   ⟹   XP_008767479
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
Rnor_6.01238,345,203 - 38,452,650 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769258   ⟹   XP_008767480
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
Rnor_6.01238,345,203 - 38,452,650 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769259   ⟹   XP_008767481
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
Rnor_6.01238,345,203 - 38,452,650 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598449   ⟹   XP_017453938
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
Rnor_6.01238,345,203 - 38,452,650 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039089727   ⟹   XP_038945655
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
RefSeq Acc Id: XM_039089728   ⟹   XP_038945656
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,928,389 - 33,017,891 (+)NCBI
RefSeq Acc Id: XM_039089729   ⟹   XP_038945657
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,933,872 - 33,017,891 (+)NCBI
RefSeq Acc Id: XM_039089730   ⟹   XP_038945658
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
RefSeq Acc Id: XM_039089731   ⟹   XP_038945659
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
RefSeq Acc Id: XM_039089732   ⟹   XP_038945660
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
RefSeq Acc Id: XM_039089733   ⟹   XP_038945661
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
RefSeq Acc Id: XM_039089734   ⟹   XP_038945662
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
RefSeq Acc Id: XM_039089735   ⟹   XP_038945663
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
RefSeq Acc Id: XM_039089736   ⟹   XP_038945664
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
RefSeq Acc Id: XM_039089737   ⟹   XP_038945665
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
RefSeq Acc Id: XM_039089738   ⟹   XP_038945666
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
RefSeq Acc Id: XM_039089739   ⟹   XP_038945667
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
RefSeq Acc Id: XM_039089740   ⟹   XP_038945668
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
Protein Sequences
Protein RefSeqs NP_113933 (Get FASTA)   NCBI Sequence Viewer  
  XP_006249416 (Get FASTA)   NCBI Sequence Viewer  
  XP_008767473 (Get FASTA)   NCBI Sequence Viewer  
  XP_008767478 (Get FASTA)   NCBI Sequence Viewer  
  XP_008767479 (Get FASTA)   NCBI Sequence Viewer  
  XP_008767480 (Get FASTA)   NCBI Sequence Viewer  
  XP_008767481 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453938 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945655 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945656 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945657 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945658 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945659 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945660 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945661 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945662 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945663 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945664 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945665 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945666 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945667 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945668 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH97264 (Get FASTA)   NCBI Sequence Viewer  
  AAW69309 (Get FASTA)   NCBI Sequence Viewer  
  CAB92974 (Get FASTA)   NCBI Sequence Viewer  
  EDM13627 (Get FASTA)   NCBI Sequence Viewer  
  EDM13628 (Get FASTA)   NCBI Sequence Viewer  
  Q9JK25 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_113933   ⟸   NM_031745
- UniProtKB: Q9JK25 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249416   ⟸   XM_006249354
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_008767473   ⟸   XM_008769251
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008767478   ⟸   XM_008769256
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_008767479   ⟸   XM_008769257
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_008767480   ⟸   XM_008769258
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_008767481   ⟸   XM_008769259
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_017453938   ⟸   XM_017598449
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000072766   ⟸   ENSRNOT00000078530
RefSeq Acc Id: ENSRNOP00000068884   ⟸   ENSRNOT00000083261
RefSeq Acc Id: ENSRNOP00000001685   ⟸   ENSRNOT00000001685
RefSeq Acc Id: ENSRNOP00000073711   ⟸   ENSRNOT00000088002
RefSeq Acc Id: XP_038945655   ⟸   XM_039089727
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038945658   ⟸   XM_039089730
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038945664   ⟸   XM_039089736
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038945665   ⟸   XM_039089737
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038945663   ⟸   XM_039089735
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038945659   ⟸   XM_039089731
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038945668   ⟸   XM_039089740
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038945660   ⟸   XM_039089732
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038945661   ⟸   XM_039089733
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038945666   ⟸   XM_039089738
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038945667   ⟸   XM_039089739
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038945662   ⟸   XM_039089734
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038945656   ⟸   XM_039089728
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038945657   ⟸   XM_039089729
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000090148   ⟸   ENSRNOT00000096011
RefSeq Acc Id: ENSRNOP00000087368   ⟸   ENSRNOT00000110644
RefSeq Acc Id: ENSRNOP00000093783   ⟸   ENSRNOT00000098458
RefSeq Acc Id: ENSRNOP00000092485   ⟸   ENSRNOT00000105301
RefSeq Acc Id: ENSRNOP00000093663   ⟸   ENSRNOT00000105680
RefSeq Acc Id: ENSRNOP00000079550   ⟸   ENSRNOT00000102474
Protein Domains
CAP-Gly

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698628
Promoter ID:EPDNEW_R9151
Type:multiple initiation site
Name:AC117299_1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01238,340,306 - 38,340,366EPDNEW
RGD ID:13698629
Promoter ID:EPDNEW_R9152
Type:initiation region
Name:Clip1_1
Description:CAP-GLY domain containing linker protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9153  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01238,345,472 - 38,345,532EPDNEW
RGD ID:13698630
Promoter ID:EPDNEW_R9153
Type:single initiation site
Name:Clip1_2
Description:CAP-GLY domain containing linker protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9152  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01238,368,678 - 38,368,738EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:67404 AgrOrtholog
Ensembl Genes ENSRNOG00000001247 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000001685 UniProtKB/TrEMBL
  ENSRNOP00000068884 UniProtKB/TrEMBL
  ENSRNOP00000072766 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000073711 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001685 UniProtKB/TrEMBL
  ENSRNOT00000078530 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000083261 UniProtKB/TrEMBL
  ENSRNOT00000088002 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.190 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CAP-Gly_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CAP-Gly_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CLIP1_ZNF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:65201 UniProtKB/Swiss-Prot
NCBI Gene 65201 ENTREZGENE
Pfam CAP_GLY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CLIP1_ZNF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Clip1 PhenoGen
PROSITE CAP_GLY_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CAP_GLY_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CAP_GLY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF74924 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC218467
UniProt A0A0G2JTX8_RAT UniProtKB/TrEMBL
  A0A0G2K681_RAT UniProtKB/TrEMBL
  CLIP1_RAT UniProtKB/Swiss-Prot
  F1MAH8_RAT UniProtKB/TrEMBL
  Q4V8P6_RAT UniProtKB/TrEMBL
  Q9JK25 ENTREZGENE
UniProt Secondary A0A0G2K3T3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-18 Clip1  CAP-GLY domain containing linker protein 1  Rsn  restin (Reed-Steinberg cell-expressed intermediate filament-associated protein)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Rsn  restin (Reed-Steinberg cell-expressed intermediate filament-associated protein)    restin  Name updated 1299863 APPROVED
2002-06-10 Rsn  restin      Name updated 70584 APPROVED
2001-07-26 Rsn  Restin (Reed-Steinberg cell-espressed intermediate      Name updated 61478 APPROVED