D12Rat13 Marker Search Result - Rat Genome Database

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Marker: D12Rat13

Symbol: D12Rat13
Previously known as: oxsts6071; R040-B11; R0040-B11; 
RGD ID: 36805
Expected Size: 170 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,825,686 - 24,825,856 (+)MAPPERmRatBN7.2
Rnor_6.01227,882,828 - 27,882,997NCBIRnor6.0
Rnor_5.01229,849,769 - 29,849,938UniSTSRnor5.0
RGSC_v3.41225,773,602 - 25,774,160RGDRGSC3.4
RGSC_v3.41225,773,966 - 25,774,135UniSTSRGSC3.4
RGSC_v3.11225,637,182 - 25,637,351RGD
Celera1226,559,619 - 26,559,788UniSTS
RH 3.4 Map12433.8RGD
RH 3.4 Map12433.8UniSTS
SHRSP x BN Map1227.31UniSTS
SHRSP x BN Map1227.31RGD
FHH x ACI Map1212.29RGD
Cytogenetic Map12q12UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
Genes:   Auts2l   Auts2  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines


 
Forward Primer AAAAAGGGAACTTCCCCTGA
Reverse Primer TTGTGTTGGTCACGCCTTTA
 
Template 
TAGAGGATCCCCCCAAGGAGACAGATGAAATCAGAGGTTGTGTTGGTCACGCCTTTAAAGGCTT
TATGTATTAATACACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTTGT
GCATGTGCATGCATGCATGCATGATGTGTTTGGAGGCTAGGCAGTATGTACAGAGGTCAGGGGA
AGTTCCCTTTTTCTTCTATATAGATCCTATCCATCTAGCTCAGGTCATAAGACTTGGGGATGAG
AACCTTTCCTGCTAAGCCATCTCAGCAGCCTGGTTCTCCCCAATTTTTCTCTTCCAAAGTAAAA
TGTCAGGTGCAAAGGGCACACATGAAGCCCAATTTTATTTTAAACCCTTTCTGTGGGCAGAACT
GTCAGCAAACAACAGCTACCACTAAATCCACCGTCCTGGTTTCCCTTCCCTCCCTGCCCCAGAA
TTGCAGAAAGACAAGTGTCTTCTTTCTTGAATCTTGAGTACCAGCAGACCTCATGAATGCACCC
TTTACATATTCACTACGGCTGGCAACAGGAACTCGCTCGCTCACTCACCAGCCATAAA
Strain, Expected Size(s)

ACI/N 169 AVN/Orl 179 BBDP/Rhw 171
BBDR/Rhw 171 BC/CpbU 171 BDIX/Han 181
BDVII/Cub 181 BN-Lx/Cub 171 BN/SsNHsd 171
BP/Cub 169 BUF/Pit 167 COP/OlaHsd 169
DA/PitN 171 DON/Melb 177 F344/Pit 177
FHH/Eur 171 GH/Omr 171 GK/KyoSwe 169
IS/Kyo 155 LE/Mol 171 LEW/Pit 171
LH/Mav 169 LN/Mav 171 LOU/CHan 171
M520/N 177 MHS/Gib 171 MNR/N 171
MNRA/N 175 MNS/Gib 171 MR/Pit 175
NEDH/K 169 NP9 171 ODU/N 169
OKA/Wsl 163 OM/Ztm 171 P5C 171
PVG/Pit 169 SD/Rij 169 SHR/OlaHsd 163
SHRSP/Riv 163 SR/Jr 169 SS/Jr 173
WAG/RijKyo 169 WF/Pit 167 WIST/Nhg 175
WKY/OlaHsd 171 WN/N 171 WTC/Kyo 171


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
2323959Auts2activator of transcription and developmental regulator AUTS2122410418725194123Rat
GenBank Nucleotide CH473973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 53 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122308134044726024Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122413920236638073Rat

1 to 10 of 53 rows


Database
Acc Id
Source(s)
NCBI Gene 100362819 UniSTS
  304419 UniSTS
  326424 UniSTS