| 631560 | Apr1 | Acute phase response QTL 1 | 6.1 | | orosomucoid 1 amount (VT:0010541) | plasma orosomucoid 1 level (CMO:0001467) | 12 | 19144362 | 46669029 | Rat |
| 8552964 | Pigfal17 | Plasma insulin-like growth factor 1 level QTL 17 | 3.5 | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 12 | 5564495 | 46669029 | Rat |
| 61324 | Eae5 | Experimental allergic encephalomyelitis QTL 5 | 14 | | nervous system integrity trait (VT:0010566) | percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402) | 12 | 19610870 | 46669029 | Rat |
| 9590147 | Scort7 | Serum corticosterone level QTL 7 | 13.61 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 12 | 1 | 42110980 | Rat |
| 1549829 | Scl48 | Serum cholesterol level QTL 48 | 5 | | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 12 | 9603277 | 46669029 | Rat |
| 61331 | Eau2 | Experimental allergic uveoretinitis QTL 2 | | 0.0005 | uvea integrity trait (VT:0010551) | experimental autoimmune uveitis score (CMO:0001504) | 12 | 8525423 | 28064601 | Rat |
| 737822 | Alc10 | Alcohol consumption QTL 10 | 2.2 | | consumption behavior trait (VT:0002069) | ethanol drink intake rate (CMO:0001407) | 12 | 19610870 | 40218516 | Rat |
| 2293684 | Bmd26 | Bone mineral density QTL 26 | 4.4 | 0.0002 | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 12 | 15872653 | 32974238 | Rat |
| 6893681 | Bw109 | Body weight QTL 109 | 2.3 | 0.004 | body mass (VT:0001259) | body weight (CMO:0000012) | 12 | 1 | 23297788 | Rat |
| 1302792 | Scl21 | Serum cholesterol level QTL 21 | 3.8 | 0.0011 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 12 | 7196730 | 46669029 | Rat |
| 1598855 | Bp294 | Blood pressure QTL 294 | 3.5 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 12 | 1 | 34851688 | Rat |
| 10755457 | Coatc14 | Coat color QTL 14 | | 0.01759 | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 12 | 1 | 22591684 | Rat |
| 1331761 | Bp218 | Blood pressure QTL 218 | 2.973 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 12 | 11073825 | 45055165 | Rat |
| 8694179 | Bw150 | Body weight QTL 150 | 2.9 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 12 | 1 | 42110980 | Rat |
| 7411545 | Bw128 | Body weight QTL 128 | 5.2 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 12 | 1 | 42110980 | Rat |
| 7411547 | Bw129 | Body weight QTL 129 | | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 6 | 5564495 | 46669029 | Rat |
| 1300157 | Rf21 | Renal function QTL 21 | 4.4 | | renal blood flow trait (VT:2000006) | absolute change in renal blood flow rate (CMO:0001168) | 12 | 9318216 | 32103380 | Rat |
| 737979 | Pia22 | Pristane induced arthritis QTL 22 | 53.1 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 12 | 1 | 44465750 | Rat |
| 1298081 | Cia25 | Collagen induced arthritis QTL 25 | 4.7 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 12 | 19610889 | 35682913 | Rat |
| 2300186 | Bmd59 | Bone mineral density QTL 59 | 7.1 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | volumetric bone mineral density (CMO:0001553) | 12 | 10474137 | 46669029 | Rat |
| 7411660 | Foco28 | Food consumption QTL 28 | 10.9 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 1 | 42110980 | Rat |
| 1331755 | Bp219 | Blood pressure QTL 219 | 3.041 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 12 | 11073825 | 28064557 | Rat |
| 70213 | Niddm27 | Non-insulin dependent diabetes mellitus QTL 27 | 3.72 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 12 | 19835789 | 38193007 | Rat |
| 2306789 | Ean6 | Experimental allergic neuritis QTL 6 | 4.9 | | nervous system integrity trait (VT:0010566) | experimental autoimmune neuritis severity score (CMO:0001528) | 12 | 19610870 | 24139202 | Rat |
| 7411641 | Foco19 | Food consumption QTL 19 | 27.7 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 5564495 | 46669029 | Rat |
| 7411643 | Foco20 | Food consumption QTL 20 | | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 20328819 | 46669029 | Rat |
| 5684888 | Pia42 | Pristane induced arthritis QTL 42 | | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 12 | 19610870 | 42828880 | Rat |
| 1549912 | Bp268 | Blood pressure QTL 268 | | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 10 | 13182736 | 46669029 | Rat |
| 2302060 | Pia37 | Pristane induced arthritis QTL 37 | 6.1 | 0.001 | blood immunoglobulin amount (VT:0002460) | serum immunoglobulin G1 level (CMO:0002115) | 12 | 13198157 | 46669029 | Rat |
| 1641928 | Alcrsp5 | Alcohol response QTL 5 | | | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 12 | 12812385 | 46669029 | Rat |
| 8552912 | Pigfal6 | Plasma insulin-like growth factor 1 level QTL 6 | 5 | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 12 | 5564498 | 46669029 | Rat |
| 10059594 | Kidm46 | Kidney mass QTL 46 | 3.79 | 0.025 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 12 | 6107579 | 46669029 | Rat |
| 1581516 | Cm56 | Cardiac mass QTL 56 | 4.2 | 0.05 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 12 | 1 | 29333307 | Rat |
| 9590086 | Insglur6 | Insulin/glucose ratio QTL 6 | 18.97 | 0.001 | blood insulin amount (VT:0001560) | calculated plasma insulin level (CMO:0002170) | 12 | 1 | 42110980 | Rat |
| 8552918 | Pigfal7 | Plasma insulin-like growth factor 1 level QTL 7 | | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 12 | 5564495 | 46669029 | Rat |
| 1549902 | Bp269 | Blood pressure QTL 269 | | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 12 | 13182736 | 46669029 | Rat |
| 61404 | Bw120 | Body weight QTL 120 | 5.1 | | body mass (VT:0001259) | body mass index (BMI) (CMO:0000105) | 12 | 12351619 | 46669029 | Rat |
| 1331786 | Kidm11 | Kidney mass QTL 11 | 3.571 | | kidney mass (VT:0002707) | right kidney wet weight (CMO:0000082) | 12 | 11073825 | 24234895 | Rat |
| 2293699 | Bss49 | Bone structure and strength QTL 49 | 5.61 | 0.0001 | lumbar vertebra size trait (VT:0010518) | lumbar vertebra trabecular cross-sectional area (CMO:0001692) | 12 | 10474137 | 46669029 | Rat |
| 634351 | Apr5 | Acute phase response QTL 5 | 6.7 | | blood interleukin-6 amount (VT:0008595) | plasma interleukin-6 level (CMO:0001927) | 12 | 1 | 44503507 | Rat |
| 634350 | Apr4 | Acute phase response QTL 4 | 6 | | orosomucoid 1 amount (VT:0010541) | plasma orosomucoid 1 level (CMO:0001467) | 12 | 1172005 | 46172005 | Rat |
| 61416 | Pia4 | Pristane induced arthritis QTL 4 | 8.4 | | joint integrity trait (VT:0010548) | arthritic paw count (CMO:0001460) | 12 | 13635523 | 30827399 | Rat |
| 631521 | Pia12 | Pristane induced arthritis QTL 12 | 8.9 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 12 | 20259417 | 23672083 | Rat |
| 7387292 | Kidm42 | Kidney mass QTL 42 | 3.03 | 0.0004 | kidney mass (VT:0002707) | left kidney wet weight (CMO:0000083) | 12 | 1 | 36247923 | Rat |
| 61421 | Cia12 | Collagen induced arthritis QTL 12 | 4.6 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 12 | 13635523 | 35682913 | Rat |
| 2303569 | Gluco44 | Glucose level QTL 44 | 2 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 12 | 12812385 | 46669029 | Rat |
| 7411586 | Foco5 | Food consumption QTL 5 | 5.4 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 1 | 42110980 | Rat |
| 2303575 | Insul14 | Insulin level QTL 14 | 4 | | blood insulin amount (VT:0001560) | blood insulin level (CMO:0000349) | 12 | 1 | 42450532 | Rat |
| 7411588 | Foco6 | Food consumption QTL 6 | | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 5564495 | 46669029 | Rat |
| 2302042 | Pia38 | Pristane induced arthritis QTL 38 | 3.5 | 0.001 | blood immunoglobulin amount (VT:0002460) | serum immunoglobulin G1 level (CMO:0002115) | 12 | 1 | 44503507 | Rat |
| 7411595 | Foco9 | Food consumption QTL 9 | 4 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 1 | 42110980 | Rat |
| 7411597 | Foco10 | Food consumption QTL 10 | | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 5564495 | 46669029 | Rat |
| 2293086 | Iddm30 | Insulin dependent diabetes mellitus QTL 30 | 3.82 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 12 | 8449490 | 28302290 | Rat |
| 631543 | Bp83 | Blood pressure QTL 83 | 5.8 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 12 | 15550826 | 38478808 | Rat |
