Gtf2i (general transcription factor II I) - Rat Genome Database

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Gene: Gtf2i (general transcription factor II I) Rattus norvegicus
Analyze
Symbol: Gtf2i
Name: general transcription factor II I
RGD ID: 727961
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II-specific DNA-binding transcription factor binding activity. Involved in negative regulation of cytosolic calcium ion concentration. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human GTF2I (general transcription factor IIi); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: general transcription factor II-I; Gtf2ird1; GTFII-I; MGC94055; TFII-I
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Is Marker For: Strains:   DA.ACI-(D12Mit2-Gtf2i)/Nsi  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81228,037,344 - 28,112,677 (+)NCBIGRCr8
mRatBN7.21222,400,933 - 22,476,243 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1222,401,431 - 22,476,243 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1223,544,441 - 23,619,242 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01224,155,505 - 24,230,339 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01223,221,169 - 23,295,801 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01225,410,804 - 25,487,970 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1225,411,207 - 25,488,156 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,420,618 - 27,497,928 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41223,470,042 - 23,545,621 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11223,350,478 - 23,408,833 (+)NCBI
Celera1224,164,158 - 24,238,521 (+)NCBICelera
Cytogenetic Map12q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
6-propyl-2-thiouracil  (EXP)
acetylsalicylic acid  (ISO)
aldehydo-D-glucose  (ISO)
allethrin  (EXP)
ammonium chloride  (EXP)
amphetamine  (EXP)
aristolochic acid A  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
cerium trichloride  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cyhalothrin  (EXP)
cypermethrin  (EXP)
D-glucose  (ISO)
diethylstilbestrol  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fenthion  (ISO)
fenvalerate  (EXP)
flutamide  (EXP)
folic acid  (ISO)
furan  (EXP)
gentamycin  (EXP)
glafenine  (EXP)
glucose  (ISO)
glyphosate  (EXP)
hexadecanoic acid  (ISO)
ivermectin  (ISO)
menadione  (ISO)
methapyrilene  (EXP)
methidathion  (ISO)
methimazole  (EXP)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phosgene  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
propiconazole  (ISO)
pyrethrins  (EXP)
rac-lactic acid  (ISO)
reactive oxygen species  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sulfadimethoxine  (EXP)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Action of TFII-I outside the nucleus as an inhibitor of agonist-induced calcium entry. Caraveo G, etal., Science. 2006 Oct 6;314(5796):122-5.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
4. Positional identification of Ncf1 as a gene that regulates arthritis severity in rats. Olofsson P, etal., Nat Genet 2003 Jan;33(1):25-32.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:14751286   PMID:17052463   PMID:19109438   PMID:19242469   PMID:19946888   PMID:22082260   PMID:22899722   PMID:25913238   PMID:25931508  


Genomics

Comparative Map Data
Gtf2i
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81228,037,344 - 28,112,677 (+)NCBIGRCr8
mRatBN7.21222,400,933 - 22,476,243 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1222,401,431 - 22,476,243 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1223,544,441 - 23,619,242 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01224,155,505 - 24,230,339 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01223,221,169 - 23,295,801 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01225,410,804 - 25,487,970 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1225,411,207 - 25,488,156 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,420,618 - 27,497,928 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41223,470,042 - 23,545,621 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11223,350,478 - 23,408,833 (+)NCBI
Celera1224,164,158 - 24,238,521 (+)NCBICelera
Cytogenetic Map12q12NCBI
GTF2I
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38774,657,718 - 74,760,692 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl774,650,231 - 74,760,692 (+)EnsemblGRCh38hg38GRCh38
GRCh37774,072,044 - 74,175,022 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36773,709,966 - 73,812,958 (+)NCBINCBI36Build 36hg18NCBI36
Build 34773,516,680 - 73,619,673NCBI
Celera769,551,230 - 69,623,844 (+)NCBICelera
Cytogenetic Map7q11.23NCBI
HuRef769,950,614 - 70,053,622 (+)NCBIHuRef
CHM1_1774,217,081 - 74,320,108 (+)NCBICHM1_1
T2T-CHM13v2.0775,860,000 - 75,962,983 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2773,405,063 - 73,508,086 (+)NCBI
Gtf2i
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395134,266,686 - 134,346,571 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5134,266,688 - 134,343,614 (-)EnsemblGRCm39 Ensembl
GRCm385134,237,832 - 134,317,678 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5134,237,834 - 134,314,760 (-)EnsemblGRCm38mm10GRCm38
MGSCv375134,713,704 - 134,790,616 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365134,522,471 - 134,599,320 (-)NCBIMGSCv36mm8
Celera5131,241,157 - 131,318,055 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map574.48NCBI
Gtf2i
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545613,369,772 - 13,446,815 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545613,371,306 - 13,461,846 (-)NCBIChiLan1.0ChiLan1.0
GTF2I
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2690,140,935 - 90,244,241 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17138,405,564 - 138,508,873 (-)NCBINHGRI_mPanPan1
PanPan1.1781,816,945 - 81,903,784 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl781,831,442 - 81,901,926 (+)Ensemblpanpan1.1panPan2
GTF2I
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.165,726,652 - 5,840,740 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl65,727,665 - 5,811,965 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha67,428,530 - 7,541,766 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.065,543,745 - 5,657,006 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl65,543,753 - 5,656,989 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.165,535,568 - 5,648,801 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.065,482,175 - 5,596,064 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.065,644,547 - 5,758,859 (-)NCBIUU_Cfam_GSD_1.0
Gtf2i
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344130,425,157 - 130,514,806 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365433,518,462 - 3,611,452 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365433,521,763 - 3,611,410 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GTF2I
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl311,671,575 - 11,811,423 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1311,656,928 - 11,811,426 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2311,424,644 - 11,529,984 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GTF2I
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1288,361,187 - 8,463,469 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl288,363,057 - 8,435,750 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660708,139,034 - 8,242,152 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gtf2i
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474013,445,872 - 13,547,056 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474013,446,811 - 13,547,050 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gtf2i
480 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:305
Count of miRNA genes:118
Interacting mature miRNAs:138
Transcripts:ENSRNOT00000002020, ENSRNOT00000040356
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121107382524234895Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382528064557Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121363552330827399Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)121961087024139202Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961088935682913Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121983578938193007Rat
631521Pia12Pristane induced arthritis QTL 128.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)122025941723672083Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat

Markers in Region
BE117132  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21222,430,668 - 22,430,818 (+)MAPPERmRatBN7.2
Rnor_6.01225,440,651 - 25,440,800NCBIRnor6.0
Rnor_5.01227,450,607 - 27,450,756UniSTSRnor5.0
RGSC_v3.41223,498,080 - 23,498,229UniSTSRGSC3.4
Celera1224,193,035 - 24,193,184UniSTS
RH 3.4 Map12346.7UniSTS
Cytogenetic Map12q12UniSTS
RH143085  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21222,432,665 - 22,432,916 (+)MAPPERmRatBN7.2
Rnor_6.01225,442,648 - 25,442,898NCBIRnor6.0
Rnor_5.01227,452,604 - 27,452,854UniSTSRnor5.0
RGSC_v3.41223,500,077 - 23,500,327UniSTSRGSC3.4
Celera1224,195,032 - 24,195,282UniSTS
RH 3.4 Map12347.3UniSTS
Cytogenetic Map12q12UniSTS
RH138602  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21222,474,593 - 22,475,256 (+)MAPPERmRatBN7.2
Rnor_6.01225,486,329 - 25,486,991NCBIRnor6.0
Rnor_5.01227,496,285 - 27,496,947UniSTSRnor5.0
RGSC_v3.41223,543,980 - 23,544,642UniSTSRGSC3.4
Celera1224,236,880 - 24,237,542UniSTS
RH 3.4 Map12354.8UniSTS
Cytogenetic Map12q12UniSTS
BI274753  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21222,475,857 - 22,476,062 (+)MAPPERmRatBN7.2
Rnor_6.01225,487,593 - 25,487,797NCBIRnor6.0
Rnor_5.01227,497,549 - 27,497,753UniSTSRnor5.0
RGSC_v3.41223,545,244 - 23,545,448UniSTSRGSC3.4
Celera1224,238,144 - 24,238,348UniSTS
RH 3.4 Map12356.0UniSTS
Cytogenetic Map12q12UniSTS
Gtf2i  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1224,231,405 - 24,233,916UniSTS
Cytogenetic Map12q12UniSTS


Related Rat Strains
The following Strains have been annotated to Gtf2i
DA.ACI-(D12Mit2-Gtf2i)/Nsi    


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001001512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF547390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF547391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ294706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ294707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000002020   ⟹   ENSRNOP00000002020
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1222,401,465 - 22,476,234 (+)Ensembl
Rnor_6.0 Ensembl1225,430,464 - 25,487,966 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000040356   ⟹   ENSRNOP00000040835
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1222,401,481 - 22,476,234 (+)Ensembl
Rnor_6.0 Ensembl1225,411,292 - 25,487,978 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000077189   ⟹   ENSRNOP00000073166
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1222,401,439 - 22,476,243 (+)Ensembl
Rnor_6.0 Ensembl1225,411,207 - 25,488,156 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092754
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1225,469,545 - 25,469,726 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1225,481,273 - 25,483,792 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092881
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1225,484,515 - 25,485,666 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092956   ⟹   ENSRNOP00000075949
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1225,450,286 - 25,462,426 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092982   ⟹   ENSRNOP00000075956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1222,401,431 - 22,474,641 (+)Ensembl
Rnor_6.0 Ensembl1225,435,567 - 25,462,451 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092988
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1225,475,504 - 25,480,132 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092995
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1225,477,616 - 25,478,407 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098927   ⟹   ENSRNOP00000096595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1222,401,439 - 22,476,243 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099403   ⟹   ENSRNOP00000076791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1222,401,465 - 22,476,229 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099547   ⟹   ENSRNOP00000093772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1222,468,422 - 22,476,232 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104703   ⟹   ENSRNOP00000080788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1222,401,465 - 22,476,234 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107220   ⟹   ENSRNOP00000077117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1222,401,465 - 22,476,234 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109966   ⟹   ENSRNOP00000095456
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1222,401,465 - 22,476,234 (+)Ensembl
RefSeq Acc Id: NM_001001512   ⟹   NP_001001512
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,037,853 - 28,112,677 (+)NCBI
mRatBN7.21222,401,417 - 22,476,243 (+)NCBI
Rnor_6.01225,411,494 - 25,487,970 (+)NCBI
Rnor_5.01227,420,618 - 27,497,928 (+)NCBI
RGSC_v3.41223,470,042 - 23,545,621 (+)RGD
Celera1224,164,158 - 24,238,521 (+)RGD
Sequence:
RefSeq Acc Id: NM_001401209   ⟹   NP_001388138
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,037,853 - 28,112,677 (+)NCBI
mRatBN7.21222,401,417 - 22,476,243 (+)NCBI
RefSeq Acc Id: NM_001401210   ⟹   NP_001388139
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,037,853 - 28,112,677 (+)NCBI
mRatBN7.21222,401,417 - 22,476,243 (+)NCBI
RefSeq Acc Id: XM_006249170   ⟹   XP_006249232
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,037,404 - 28,112,669 (+)NCBI
mRatBN7.21222,401,413 - 22,476,243 (+)NCBI
Rnor_6.01225,411,297 - 25,487,970 (+)NCBI
Rnor_5.01227,420,618 - 27,497,928 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769141   ⟹   XP_008767363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,037,357 - 28,112,669 (+)NCBI
mRatBN7.21222,400,933 - 22,476,243 (+)NCBI
Rnor_6.01225,410,804 - 25,487,970 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598360   ⟹   XP_017453849
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,039,004 - 28,112,669 (+)NCBI
mRatBN7.21222,420,772 - 22,476,243 (+)NCBI
Rnor_6.01225,430,459 - 25,487,970 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598362   ⟹   XP_017453851
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,039,004 - 28,112,669 (+)NCBI
mRatBN7.21222,420,772 - 22,476,243 (+)NCBI
Rnor_6.01225,430,459 - 25,487,970 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598363   ⟹   XP_017453852
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,039,004 - 28,112,669 (+)NCBI
mRatBN7.21222,420,772 - 22,476,243 (+)NCBI
Rnor_6.01225,430,459 - 25,487,970 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598366   ⟹   XP_017453855
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,057,211 - 28,112,669 (+)NCBI
mRatBN7.21222,420,772 - 22,476,243 (+)NCBI
Rnor_6.01225,430,459 - 25,487,970 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598369   ⟹   XP_017453858
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,057,211 - 28,112,669 (+)NCBI
mRatBN7.21222,420,772 - 22,476,243 (+)NCBI
Rnor_6.01225,430,459 - 25,487,970 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598370   ⟹   XP_017453859
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,057,211 - 28,112,669 (+)NCBI
mRatBN7.21222,420,772 - 22,476,243 (+)NCBI
Rnor_6.01225,430,459 - 25,487,970 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039089536   ⟹   XP_038945464
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,076,229 - 28,112,669 (+)NCBI
mRatBN7.21222,439,794 - 22,476,243 (+)NCBI
RefSeq Acc Id: XM_039089537   ⟹   XP_038945465
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,076,229 - 28,112,669 (+)NCBI
mRatBN7.21222,439,794 - 22,476,243 (+)NCBI
RefSeq Acc Id: XM_063271408   ⟹   XP_063127478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,039,004 - 28,112,669 (+)NCBI
RefSeq Acc Id: XM_063271409   ⟹   XP_063127479
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,039,004 - 28,112,669 (+)NCBI
RefSeq Acc Id: XM_063271410   ⟹   XP_063127480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,038,970 - 28,112,669 (+)NCBI
RefSeq Acc Id: XM_063271411   ⟹   XP_063127481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,039,004 - 28,112,669 (+)NCBI
RefSeq Acc Id: XM_063271413   ⟹   XP_063127483
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,038,282 - 28,112,669 (+)NCBI
RefSeq Acc Id: XM_063271414   ⟹   XP_063127484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,039,004 - 28,112,669 (+)NCBI
RefSeq Acc Id: XM_063271415   ⟹   XP_063127485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,038,282 - 28,112,669 (+)NCBI
RefSeq Acc Id: XM_063271416   ⟹   XP_063127486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,038,270 - 28,112,669 (+)NCBI
RefSeq Acc Id: XM_063271417   ⟹   XP_063127487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,037,344 - 28,112,669 (+)NCBI
RefSeq Acc Id: XM_063271418   ⟹   XP_063127488
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,037,404 - 28,112,669 (+)NCBI
RefSeq Acc Id: XM_063271419   ⟹   XP_063127489
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,037,404 - 28,112,669 (+)NCBI
RefSeq Acc Id: XM_063271420   ⟹   XP_063127490
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,038,265 - 28,112,669 (+)NCBI
RefSeq Acc Id: XM_063271421   ⟹   XP_063127491
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81228,037,353 - 28,112,669 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001001512 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388138 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388139 (Get FASTA)   NCBI Sequence Viewer  
  XP_006249232 (Get FASTA)   NCBI Sequence Viewer  
  XP_008767363 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453849 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453851 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453852 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453855 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453858 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453859 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945464 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945465 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127478 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127479 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127480 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127481 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127483 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127484 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127485 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127486 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127487 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127488 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127489 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127490 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127491 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH85815 (Get FASTA)   NCBI Sequence Viewer  
  AAO32678 (Get FASTA)   NCBI Sequence Viewer  
  AAO32679 (Get FASTA)   NCBI Sequence Viewer  
  EDM13438 (Get FASTA)   NCBI Sequence Viewer  
  EDM13439 (Get FASTA)   NCBI Sequence Viewer  
  EDM13440 (Get FASTA)   NCBI Sequence Viewer  
  EDM13441 (Get FASTA)   NCBI Sequence Viewer  
  EDM13442 (Get FASTA)   NCBI Sequence Viewer  
  EDM13443 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000002020
  ENSRNOP00000002020.3
  ENSRNOP00000040835
  ENSRNOP00000040835.2
  ENSRNOP00000073166
  ENSRNOP00000073166.1
  ENSRNOP00000075956.2
  ENSRNOP00000076791.1
  ENSRNOP00000077117
  ENSRNOP00000077117.1
  ENSRNOP00000080788.1
  ENSRNOP00000093772.1
  ENSRNOP00000095456
  ENSRNOP00000095456.1
  ENSRNOP00000096595
  ENSRNOP00000096595.1
  ENSRNOP00055000176
  ENSRNOP00060014396
  ENSRNOP00065001138
GenBank Protein Q5U2Y1 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001001512   ⟸   NM_001001512
- Peptide Label: isoform 1
- UniProtKB: A0A1B0GWN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249232   ⟸   XM_006249170
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K4T7 (UniProtKB/TrEMBL),   A0A1B0GWN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767363   ⟸   XM_008769141
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K4T7 (UniProtKB/TrEMBL),   A0A1B0GWN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453851   ⟸   XM_017598362
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AST1 (UniProtKB/TrEMBL),   A0A1B0GWN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453849   ⟸   XM_017598360
- Peptide Label: isoform X2
- UniProtKB: A6J0J9 (UniProtKB/TrEMBL),   A0A1B0GWN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453852   ⟸   XM_017598363
- Peptide Label: isoform X5
- UniProtKB: A6J0K0 (UniProtKB/TrEMBL),   A0A1B0GWN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453855   ⟸   XM_017598366
- Peptide Label: isoform X8
- UniProtKB: A0A8I5ZK83 (UniProtKB/TrEMBL),   A0A1B0GWN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453859   ⟸   XM_017598370
- Peptide Label: isoform X11
- UniProtKB: A0A1B0GWN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453858   ⟸   XM_017598369
- Peptide Label: isoform X10
- UniProtKB: A0A1B0GWN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073166   ⟸   ENSRNOT00000077189
RefSeq Acc Id: ENSRNOP00000002020   ⟸   ENSRNOT00000002020
RefSeq Acc Id: ENSRNOP00000075956   ⟸   ENSRNOT00000092982
RefSeq Acc Id: ENSRNOP00000075949   ⟸   ENSRNOT00000092956
RefSeq Acc Id: ENSRNOP00000040835   ⟸   ENSRNOT00000040356
RefSeq Acc Id: XP_038945464   ⟸   XM_039089536
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038945465   ⟸   XM_039089537
- Peptide Label: isoform X13
RefSeq Acc Id: ENSRNOP00000093772   ⟸   ENSRNOT00000099547
RefSeq Acc Id: ENSRNOP00000077117   ⟸   ENSRNOT00000107220
RefSeq Acc Id: ENSRNOP00000095456   ⟸   ENSRNOT00000109966
RefSeq Acc Id: ENSRNOP00000096595   ⟸   ENSRNOT00000098927
RefSeq Acc Id: ENSRNOP00000080788   ⟸   ENSRNOT00000104703
RefSeq Acc Id: ENSRNOP00000076791   ⟸   ENSRNOT00000099403
RefSeq Acc Id: NP_001388138   ⟸   NM_001401209
- Peptide Label: isoform 2
- UniProtKB: Q5U2Y1 (UniProtKB/Swiss-Prot),   Q80SX4 (UniProtKB/Swiss-Prot),   A6J0K2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388139   ⟸   NM_001401210
- Peptide Label: isoform 3
- UniProtKB: A0A8I6ALH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127487   ⟸   XM_063271417
- Peptide Label: isoform X6
- UniProtKB: A0A8I6ALH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127491   ⟸   XM_063271421
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZRM5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127488   ⟸   XM_063271418
- Peptide Label: isoform X7
- UniProtKB: A6J0K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127489   ⟸   XM_063271419
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZRM5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127490   ⟸   XM_063271420
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZRM5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127486   ⟸   XM_063271416
- Peptide Label: isoform X6
- UniProtKB: A0A8I6ALH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127483   ⟸   XM_063271413
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K4T7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127485   ⟸   XM_063271415
- Peptide Label: isoform X3
- UniProtKB: Q80SX4 (UniProtKB/Swiss-Prot),   Q5U2Y1 (UniProtKB/Swiss-Prot),   A6J0K2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127480   ⟸   XM_063271410
- Peptide Label: isoform X6
- UniProtKB: A0A8I6ALH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127478   ⟸   XM_063271408
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K4T7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127479   ⟸   XM_063271409
- Peptide Label: isoform X3
- UniProtKB: Q80SX4 (UniProtKB/Swiss-Prot),   Q5U2Y1 (UniProtKB/Swiss-Prot),   A6J0K2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127481   ⟸   XM_063271411
- Peptide Label: isoform X7
- UniProtKB: A6J0K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127484   ⟸   XM_063271414
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZRM5 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U2Y1-F1-model_v2 AlphaFold Q5U2Y1 1-979 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698572
Promoter ID:EPDNEW_R9097
Type:initiation region
Name:Gtf2i_1
Description:general transcription factor II I
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01225,411,337 - 25,411,397EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727961 AgrOrtholog
BioCyc Gene G2FUF-19572 BioCyc
Ensembl Genes ENSRNOG00000001479 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055000171 UniProtKB/Swiss-Prot
  ENSRNOG00060010888 UniProtKB/Swiss-Prot
  ENSRNOG00065001214 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000002020 ENTREZGENE
  ENSRNOT00000002020.7 UniProtKB/Swiss-Prot
  ENSRNOT00000040356 ENTREZGENE
  ENSRNOT00000040356.6 UniProtKB/Swiss-Prot
  ENSRNOT00000077189.2 UniProtKB/TrEMBL
  ENSRNOT00000092982.2 UniProtKB/TrEMBL
  ENSRNOT00000098927.1 UniProtKB/TrEMBL
  ENSRNOT00000099403.1 UniProtKB/TrEMBL
  ENSRNOT00000099547.1 UniProtKB/TrEMBL
  ENSRNOT00000104703.1 UniProtKB/TrEMBL
  ENSRNOT00000107220.1 UniProtKB/TrEMBL
  ENSRNOT00000109966 ENTREZGENE
  ENSRNOT00000109966.1 UniProtKB/TrEMBL
  ENSRNOT00055000281 UniProtKB/Swiss-Prot
  ENSRNOT00060018510 UniProtKB/Swiss-Prot
  ENSRNOT00065001622 UniProtKB/Swiss-Prot
Gene3D-CATH 3.90.1460.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7123295 IMAGE-MGC_LOAD
InterPro GTF2I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GTF2I-like_rpt_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_II-I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:353256 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94055 IMAGE-MGC_LOAD
NCBI Gene 353256 ENTREZGENE
PANTHER GENERAL TRANSCRIPTION FACTOR II-I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GENERAL TRANSCRIPTION FACTOR II-I REPEAT DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GTF2I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gtf2i PhenoGen
PIRSF TF_II-I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE GTF2I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001479 RatGTEx
  ENSRNOG00055000171 RatGTEx
  ENSRNOG00060010888 RatGTEx
  ENSRNOG00065001214 RatGTEx
Superfamily-SCOP SSF117773 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K4T7 ENTREZGENE, UniProtKB/TrEMBL
  A0A1B0GWN0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZK57_RAT UniProtKB/TrEMBL
  A0A8I5ZK83 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZRM5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ALH4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AST1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GKF6_RAT UniProtKB/TrEMBL
  A6J0J9 ENTREZGENE, UniProtKB/TrEMBL
  A6J0K0 ENTREZGENE, UniProtKB/TrEMBL
  A6J0K2 ENTREZGENE, UniProtKB/TrEMBL
  A6J0K4 ENTREZGENE, UniProtKB/TrEMBL
  GTF2I_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q80SX4 ENTREZGENE
UniProt Secondary Q80SX4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-07-08 Gtf2i  general transcription factor II I      Symbol and Name status set to approved 1299863 APPROVED