GATC (glutamyl-tRNA amidotransferase subunit C) - Rat Genome Database

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Gene: GATC (glutamyl-tRNA amidotransferase subunit C) Homo sapiens
Analyze
Symbol: GATC
Name: glutamyl-tRNA amidotransferase subunit C
RGD ID: 1606925
HGNC Page HGNC:25068
Description: Predicted to enable ATP binding activity and glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity. Involved in glutaminyl-tRNAGln biosynthesis via transamidation and mitochondrial translation. Located in mitochondrion. Part of glutamyl-tRNA(Gln) amidotransferase complex. Implicated in combined oxidative phosphorylation deficiency 42.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 15E1.2; COXPD42; FLJ37000; gatC-like protein; glu-AdT subunit C; glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial; glutamyl-tRNA(Gln) amidotransferase, subunit C; glutamyl-tRNA(Gln) amidotransferase, subunit C homolog; MGC129938
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812120,446,444 - 120,463,749 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12120,446,444 - 120,463,749 (+)EnsemblGRCh38hg38GRCh38
GRCh3712120,884,247 - 120,901,552 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612119,368,667 - 119,382,145 (+)NCBINCBI36Build 36hg18NCBI36
Celera12120,518,953 - 120,536,271 (+)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12117,893,031 - 117,910,347 (+)NCBIHuRef
CHM1_112120,852,732 - 120,870,048 (+)NCBICHM1_1
T2T-CHM13v2.012120,434,957 - 120,452,263 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
glutamyl-tRNA(Gln) amidotransferase complex  (IBA,IDA,IEA,IPI)
mitochondrion  (HTP,IBA,IDA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14702039   PMID:15489334   PMID:16541075   PMID:19805282   PMID:20877624   PMID:21873635   PMID:22939629   PMID:24579914   PMID:25416956   PMID:26496610   PMID:28380382  
PMID:28514442   PMID:28986522   PMID:29568061   PMID:31056398   PMID:31617661   PMID:32296183   PMID:32628020   PMID:32877691   PMID:33957083   PMID:33961781   PMID:34800366  


Genomics

Comparative Map Data
GATC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812120,446,444 - 120,463,749 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12120,446,444 - 120,463,749 (+)EnsemblGRCh38hg38GRCh38
GRCh3712120,884,247 - 120,901,552 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612119,368,667 - 119,382,145 (+)NCBINCBI36Build 36hg18NCBI36
Celera12120,518,953 - 120,536,271 (+)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12117,893,031 - 117,910,347 (+)NCBIHuRef
CHM1_112120,852,732 - 120,870,048 (+)NCBICHM1_1
T2T-CHM13v2.012120,434,957 - 120,452,263 (+)NCBIT2T-CHM13v2.0
Gatc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395115,471,301 - 115,479,220 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5115,471,298 - 115,479,237 (-)EnsemblGRCm39 Ensembl
GRCm385115,333,242 - 115,341,161 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5115,333,239 - 115,341,178 (-)EnsemblGRCm38mm10GRCm38
MGSCv375115,783,251 - 115,791,170 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365115,594,241 - 115,602,160 (-)NCBIMGSCv36mm8
Celera5112,430,278 - 112,438,417 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map556.05NCBI
Gatc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81246,930,820 - 46,938,790 (+)NCBIGRCr8
mRatBN7.21241,270,096 - 41,278,067 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1241,270,087 - 41,277,995 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1242,436,878 - 42,444,864 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01243,050,547 - 43,058,532 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01242,111,100 - 42,119,086 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01247,031,545 - 47,039,556 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1246,989,951 - 47,039,542 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1247,031,595 - 47,036,956 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01248,824,902 - 48,832,872 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41242,538,202 - 42,546,172 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11242,401,598 - 42,649,780 (+)NCBI
Celera1242,891,045 - 42,899,015 (+)NCBICelera
Cytogenetic Map12q16NCBI
Gatc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545511,184,693 - 11,195,340 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545511,184,400 - 11,195,398 (-)NCBIChiLan1.0ChiLan1.0
GATC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210128,514,711 - 128,532,091 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112128,511,088 - 128,528,472 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012118,028,042 - 118,045,403 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112121,402,534 - 121,419,638 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12121,402,532 - 121,419,628 (+)Ensemblpanpan1.1panPan2
GATC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12616,352,826 - 16,362,298 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2616,356,405 - 16,366,776 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02616,619,962 - 16,630,331 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2616,620,025 - 16,630,672 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12616,580,028 - 16,590,399 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02616,656,738 - 16,667,109 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02616,698,571 - 16,708,944 (+)NCBIUU_Cfam_GSD_1.0
Gatc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118145,993,682 - 146,001,964 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936668488,026 - 500,800 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936668492,571 - 500,845 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GATC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1440,414,017 - 40,423,628 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11440,413,864 - 40,425,306 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21442,881,364 - 42,890,910 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GATC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111115,800,928 - 115,813,142 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11115,800,949 - 115,812,555 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037129,286,253 - 129,299,236 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gatc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474713,210,282 - 13,220,328 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474713,210,001 - 13,220,434 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GATC
18 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 12q24.23-24.33(chr12:118165459-133182322)x3 copy number gain See cases [RCV000050866] Chr12:118165459..133182322 [GRCh38]
Chr12:118603264..133758908 [GRCh37]
Chr12:117087647..132268981 [NCBI36]
Chr12:12q24.23-24.33
pathogenic
GRCh38/hg38 12q24.23-24.31(chr12:119286893-122638552)x3 copy number gain See cases [RCV000051981] Chr12:119286893..122638552 [GRCh38]
Chr12:119724698..123123099 [GRCh37]
Chr12:118209081..121689052 [NCBI36]
Chr12:12q24.23-24.31
uncertain significance
GRCh38/hg38 12q24.21-24.33(chr12:115131583-133166920)x3 copy number gain See cases [RCV000053689] Chr12:115131583..133166920 [GRCh38]
Chr12:115569388..133743506 [GRCh37]
Chr12:114053771..132253579 [NCBI36]
Chr12:12q24.21-24.33
pathogenic
GRCh38/hg38 12q24.23-24.33(chr12:119417382-133191400)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053691]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053691]|See cases [RCV000053691] Chr12:119417382..133191400 [GRCh38]
Chr12:119855187..133767986 [GRCh37]
Chr12:118339570..132278059 [NCBI36]
Chr12:12q24.23-24.33
pathogenic
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33
pathogenic
GRCh38/hg38 12q24.21-24.33(chr12:114268403-133201316)x3 copy number gain See cases [RCV000143656] Chr12:114268403..133201316 [GRCh38]
Chr12:114706208..133777902 [GRCh37]
Chr12:113190591..132287975 [NCBI36]
Chr12:12q24.21-24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3 copy number gain See cases [RCV000258805] Chr12:1..133851895 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic|likely pathogenic
GRCh37/hg19 12q24.23-24.31(chr12:118486842-120995382)x3 copy number gain See cases [RCV000447605] Chr12:118486842..120995382 [GRCh37]
Chr12:12q24.23-24.31
likely pathogenic
GRCh37/hg19 12q24.31(chr12:120875916-120884607)x3 copy number gain See cases [RCV000448265] Chr12:120875916..120884607 [GRCh37]
Chr12:12q24.31
conflicting data from submitters
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3 copy number gain See cases [RCV000510482] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
NM_176818.3(GATC):c.310C>G (p.Leu104Val) single nucleotide variant not provided [RCV000494279] Chr12:120457131 [GRCh38]
Chr12:120894934 [GRCh37]
Chr12:12q24.31
uncertain significance
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902) copy number gain See cases [RCV000511643] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
NM_176818.3(GATC):c.233T>G (p.Met78Arg) single nucleotide variant Cardiomyopathy, mitochondrial [RCV000684834]|Combined oxidative phosphorylation deficiency 42 [RCV001035465] Chr12:120446808 [GRCh38]
Chr12:120884611 [GRCh37]
Chr12:12q24.31
pathogenic
GRCh37/hg19 12q24.23-24.31(chr12:120516089-121376736)x3 copy number gain not provided [RCV000683452] Chr12:120516089..121376736 [GRCh37]
Chr12:12q24.23-24.31
uncertain significance
GRCh37/hg19 12q24.23-24.33(chr12:120367241-133777645)x3 copy number gain not provided [RCV000738070] Chr12:120367241..133777645 [GRCh37]
Chr12:12q24.23-24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3 copy number gain not provided [RCV000750246] Chr12:191619..133777645 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3 copy number gain not provided [RCV000750253] Chr12:621220..133779118 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
NM_176818.3(GATC):c.45C>T (p.Gly15=) single nucleotide variant not provided [RCV001641914] Chr12:120446525 [GRCh38]
Chr12:120884328 [GRCh37]
Chr12:12q24.31
benign
NM_176818.3(GATC):c.8C>T (p.Ser3Leu) single nucleotide variant not provided [RCV001720650] Chr12:120446488 [GRCh38]
Chr12:120884291 [GRCh37]
Chr12:12q24.31
benign
GRCh37/hg19 12q24.23-24.31(chr12:120665945-120951612)x3 copy number gain not provided [RCV002473613] Chr12:120665945..120951612 [GRCh37]
Chr12:12q24.23-24.31
uncertain significance
NM_176818.3(GATC):c.359-58T>C single nucleotide variant not provided [RCV001637849] Chr12:120459849 [GRCh38]
Chr12:120897652 [GRCh37]
Chr12:12q24.31
benign
NM_176818.3(GATC):c.*10T>G single nucleotide variant not provided [RCV001638318] Chr12:120459969 [GRCh38]
Chr12:120897772 [GRCh37]
Chr12:12q24.31
benign
NM_176818.3(GATC):c.255-194C>T single nucleotide variant not provided [RCV001672069] Chr12:120456882 [GRCh38]
Chr12:120894685 [GRCh37]
Chr12:12q24.31
benign
NM_176818.3(GATC):c.336G>A (p.Glu112=) single nucleotide variant not provided [RCV004598729] Chr12:120457157 [GRCh38]
Chr12:120894960 [GRCh37]
Chr12:12q24.31
likely benign
NM_176818.3(GATC):c.359-151C>T single nucleotide variant not provided [RCV001539868] Chr12:120459756 [GRCh38]
Chr12:120897559 [GRCh37]
Chr12:12q24.31
benign
GRCh37/hg19 12q24.22-24.33(chr12:117461902-133841395)x3 copy number gain Neurodevelopmental disorder with nonspecific brain abnormalities and with or without seizures [RCV001801213] Chr12:117461902..133841395 [GRCh37]
Chr12:12q24.22-24.33
likely pathogenic
GRCh37/hg19 12q24.23-24.31(chr12:118486842-120995382) copy number gain not specified [RCV002053027] Chr12:118486842..120995382 [GRCh37]
Chr12:12q24.23-24.31
likely pathogenic
NM_176818.3(GATC):c.356C>A (p.Pro119Gln) single nucleotide variant not specified [RCV004321123] Chr12:120457177 [GRCh38]
Chr12:120894980 [GRCh37]
Chr12:12q24.31
uncertain significance
NM_003769.3(SRSF9):c.605G>A (p.Arg202His) single nucleotide variant not specified [RCV004333118] Chr12:120462080 [GRCh38]
Chr12:120899883 [GRCh37]
Chr12:12q24.31
uncertain significance
GRCh37/hg19 12q24.31(chr12:120761046-121280839)x4 copy number gain not provided [RCV002475870] Chr12:120761046..121280839 [GRCh37]
Chr12:12q24.31
uncertain significance
NM_003769.3(SRSF9):c.644T>A (p.Phe215Tyr) single nucleotide variant not specified [RCV004209344] Chr12:120462041 [GRCh38]
Chr12:120899844 [GRCh37]
Chr12:12q24.31
uncertain significance
NM_176818.3(GATC):c.125G>A (p.Arg42His) single nucleotide variant not specified [RCV004176179] Chr12:120446700 [GRCh38]
Chr12:120884503 [GRCh37]
Chr12:12q24.31
uncertain significance
NM_176818.3(GATC):c.128T>C (p.Leu43Pro) single nucleotide variant Combined oxidative phosphorylation deficiency 42 [RCV003130992] Chr12:120446703 [GRCh38]
Chr12:120884506 [GRCh37]
Chr12:12q24.31
uncertain significance
NM_176818.3(GATC):c.123G>T (p.Glu41Asp) single nucleotide variant not specified [RCV004344961] Chr12:120446698 [GRCh38]
Chr12:120884501 [GRCh37]
Chr12:12q24.31
uncertain significance
GRCh37/hg19 12q24.31-24.33(chr12:120880079-133777902)x3 copy number gain not provided [RCV003484880] Chr12:120880079..133777902 [GRCh37]
Chr12:12q24.31-24.33
pathogenic
NM_176818.3(GATC):c.96C>T (p.Ile32=) single nucleotide variant not provided [RCV003392083] Chr12:120446671 [GRCh38]
Chr12:120884474 [GRCh37]
Chr12:12q24.31
likely benign
NM_176818.3(GATC):c.145G>A (p.Gly49Ser) single nucleotide variant not specified [RCV004634608] Chr12:120446720 [GRCh38]
Chr12:120884523 [GRCh37]
Chr12:12q24.31
uncertain significance
NM_176818.3(GATC):c.304G>C (p.Glu102Gln) single nucleotide variant not specified [RCV004395154] Chr12:120457125 [GRCh38]
Chr12:120894928 [GRCh37]
Chr12:12q24.31
uncertain significance
NC_000012.11:g.(?_120270555)_(124242579_?)dup duplication Deficiency of butyryl-CoA dehydrogenase [RCV004578383] Chr12:120270555..124242579 [GRCh37]
Chr12:12q24.23-24.31
uncertain significance
NM_003769.3(SRSF9):c.562A>G (p.Thr188Ala) single nucleotide variant not specified [RCV004679509] Chr12:120462123 [GRCh38]
Chr12:120899926 [GRCh37]
Chr12:12q24.31
uncertain significance
NM_176818.3(GATC):c.62C>T (p.Thr21Ile) single nucleotide variant not specified [RCV004623841] Chr12:120446542 [GRCh38]
Chr12:120884345 [GRCh37]
Chr12:12q24.31
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:947
Count of miRNA genes:606
Interacting mature miRNAs:663
Transcripts:ENST00000229384, ENST00000548171, ENST00000551765
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407175589GWAS824565_Halkaline phosphatase measurement QTL GWAS824565 (human)7e-15alkaline phosphatase measurementblood alkaline phosphatase activity level (CMO:0000576)12120449710120449711Human
1298449UAE2_HUrinary albumin excretion QTL 2 (human)20.005Urinary albumin excretionurine albumin:creatinine ratio (ACR)12102836889128836889Human
407311813GWAS960789_Hlow density lipoprotein cholesterol measurement QTL GWAS960789 (human)5e-09low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)12120449865120449866Human
1643258BW205_HBody weight QTL 205 (human)4.080.00001Body fat amountpercent body fat1296630114122630114Human
407186038GWAS835014_Hmean corpuscular volume QTL GWAS835014 (human)7e-10mean corpuscular volumemean corpuscular volume (CMO:0000038)12120456515120456516Human
1643452BW104_HBody weight QTL 104 (human)1.890.005Body fat amountabdominal visceral12102395874128395874Human
407246787GWAS895763_Hadolescent idiopathic scoliosis QTL GWAS895763 (human)2e-33adolescent idiopathic scoliosis12120453513120453514Human
407339213GWAS988189_HC-reactive protein measurement QTL GWAS988189 (human)2e-24C-reactive protein measurementblood C-reactive protein level (CMO:0003160)12120453757120453758Human

Markers in Region
RH80576  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712120,899,086 - 120,899,230UniSTSGRCh37
Build 3612119,383,469 - 119,383,613RGDNCBI36
Celera12120,533,801 - 120,533,945RGD
Cytogenetic Map12q24.31UniSTS
HuRef12117,907,872 - 117,908,016UniSTS
GeneMap99-GB4 RH Map12466.62UniSTS
Cda16c02  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712120,901,345 - 120,901,454UniSTSGRCh37
Build 3612119,385,728 - 119,385,837RGDNCBI36
Celera12120,536,060 - 120,536,169RGD
Cytogenetic Map12q24.31UniSTS
HuRef12117,910,136 - 117,910,245UniSTS
SHGC-84921  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712120,897,768 - 120,897,961UniSTSGRCh37
GRCh377130,329,569 - 130,330,081UniSTSGRCh37
Build 3612119,382,151 - 119,382,344RGDNCBI36
Celera7125,077,392 - 125,077,904UniSTS
Celera12120,532,483 - 120,532,676RGD
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map7q32UniSTS
HuRef12117,906,554 - 117,906,747UniSTS
HuRef7124,645,158 - 124,645,670UniSTS
CRA_TCAGchr7v27129,666,067 - 129,666,579UniSTS
TNG Radiation Hybrid Map1259816.0UniSTS
G64611  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712120,891,774 - 120,891,953UniSTSGRCh37
Build 3612119,376,157 - 119,376,336RGDNCBI36
Celera12120,526,487 - 120,526,666RGD
Cytogenetic Map12q24.31UniSTS
HuRef12117,900,556 - 117,900,735UniSTS
STS-W73277  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712120,899,318 - 120,899,518UniSTSGRCh37
Build 3612119,383,701 - 119,383,901RGDNCBI36
Celera12120,534,033 - 120,534,233RGD
Cytogenetic Map12q24.31UniSTS
HuRef12117,908,104 - 117,908,304UniSTS
GeneMap99-GB4 RH Map12467.21UniSTS
SFRS9_8845  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712120,899,378 - 120,899,958UniSTSGRCh37
Build 3612119,383,761 - 119,384,341RGDNCBI36
Celera12120,534,093 - 120,534,673RGD
HuRef12117,908,164 - 117,908,744UniSTS
RH44493  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712120,901,277 - 120,901,415UniSTSGRCh37
Build 3612119,385,660 - 119,385,798RGDNCBI36
Celera12120,535,992 - 120,536,130RGD
Cytogenetic Map12q24.31UniSTS
HuRef12117,910,068 - 117,910,206UniSTS
GeneMap99-GB4 RH Map12465.41UniSTS
G19881  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712120,901,245 - 120,901,492UniSTSGRCh37
Build 3612119,385,628 - 119,385,875RGDNCBI36
Celera12120,535,960 - 120,536,207RGD
Cytogenetic Map12q24.31UniSTS
HuRef12117,910,036 - 117,910,283UniSTS
A002B13  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712120,901,245 - 120,901,492UniSTSGRCh37
Build 3612119,385,628 - 119,385,875RGDNCBI36
Celera12120,535,960 - 120,536,207RGD
Cytogenetic Map12q24.31UniSTS
HuRef12117,910,036 - 117,910,283UniSTS
GeneMap99-GB4 RH Map12467.21UniSTS
GDB:313261  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map1p35.3-p33UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.32UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map4q12UniSTS
L17702  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map6pter-q22.33UniSTS
Cytogenetic Map2q33.2UniSTS
D11S2921  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map14q13.2UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map10q24.33UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map11q14UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map4q32.1UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map13q12UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map12q21.33UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic MapXp11.4-p11.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map1q24.1UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map10p15.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map2q14UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map2q33-q34UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic MapYp11.2UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map2q37UniSTS
Cytogenetic Map18pter-p11.3UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map2q21.3UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic MapXq22.1UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map4q34.1UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map3q13.31UniSTS
Cytogenetic Map7q21.12UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map6p22UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map16p13.13UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map19p13.1-p12UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map18p11.31-p11.21UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map7p21.2UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map1q42.1UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map5q35UniSTS
Cytogenetic Map8p23-p22UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map17q21-q22UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map11p13-p12UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map2q12.1UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map3q26.32UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map5q12-q13UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map20p12.3-p11.21UniSTS
Cytogenetic Map17q11.2-q12UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map12q13-q14UniSTS
Cytogenetic Map6q14.1UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map1p31UniSTS
Cytogenetic Map15q15-q21.1UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map11q22.1UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map21p11.1UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map6p22.3-p22.1UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map6q15UniSTS
Cytogenetic MapXq25-q26.3UniSTS
Cytogenetic Map10q22.3UniSTS
Cytogenetic Map12q24.31-q24.32UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map12p12.2-p11.2UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic MapXp11UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map18p11.32UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map4p13UniSTS
Cytogenetic Map16p12.1UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map20q13.1UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map9p24.1-p23UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic MapXq12-q13UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map14q23UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map1q42.1-q43UniSTS
Cytogenetic Map7q31.1-q31.3UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map20q12-q13.12UniSTS
Cytogenetic Map1q24-q25.3UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map6q25.1-q26UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map7p11UniSTS
Cytogenetic Map12p11.22UniSTS
Cytogenetic Map17q23.1UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map9p11UniSTS
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map9p24.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map6p22.2UniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map11p11.11UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map15q22-q23UniSTS
Cytogenetic Map9p21UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic Map15q22-qterUniSTS
Cytogenetic Map10q25UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map5p15.1UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map14q24.1UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map2q23.3UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map18q23UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map2q21.2UniSTS
Cytogenetic Map15q13.3UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map19p13.2-cenUniSTS
Cytogenetic Map19p13.3-p13.2UniSTS
Cytogenetic Map13q32.3UniSTS
Cytogenetic Map9q33UniSTS
Cytogenetic Map1p36-p35UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map12q23UniSTS
Cytogenetic Map21q22.13UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map7q31.1-q31.2UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map4q25-q27UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic MapXq26.2UniSTS
Cytogenetic Map8q13.2UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map5q23.1UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map3p26.1UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic MapXq21.3UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map5p13.1-p12UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map3p21.1-p14.3UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map10q24.31UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map11p15UniSTS
Cytogenetic Map6q14.3-q16.1UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map6q25UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map6q14.3UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map13q12.2UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map10p11.21UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map9q22.3UniSTS
Cytogenetic Map17q21.1-q21.3UniSTS
Cytogenetic Map6q11.1UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map22q13.1-q13.2UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map9q32-q33.3UniSTS
Cytogenetic Map8q21.2UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map12p13.2-p12.3UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map5q11.2UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map12q23.1UniSTS
Cytogenetic Map10q24.2UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map5p13UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map10q24-q25UniSTS
Cytogenetic Map7p11.1UniSTS
Cytogenetic Map14q11.2-q21UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map10q23.31UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map2p24.1UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map7p13-p11.1UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic Map5p14.3UniSTS
Cytogenetic MapXp22.13UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map9p13.1UniSTS
Cytogenetic Map9q34.13UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4973 1726 2351 6 624 1951 465 2269 7306 6472 53 3734 1 852 1744 1617 175 1

Sequence


Ensembl Acc Id: ENST00000229384   ⟹   ENSP00000229384
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12120,446,577 - 120,459,921 (+)Ensembl
Ensembl Acc Id: ENST00000548171   ⟹   ENSP00000448397
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12120,446,444 - 120,460,344 (+)Ensembl
Ensembl Acc Id: ENST00000551765   ⟹   ENSP00000446872
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12120,446,444 - 120,463,749 (+)Ensembl
RefSeq Acc Id: NM_176818   ⟹   NP_789788
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812120,446,444 - 120,463,749 (+)NCBI
GRCh3712120,884,241 - 120,901,556 (+)RGD
Build 3612119,368,667 - 119,382,145 (+)NCBI Archive
Celera12120,518,953 - 120,536,271 (+)RGD
HuRef12117,893,031 - 117,910,347 (+)RGD
CHM1_112120,852,732 - 120,870,048 (+)NCBI
T2T-CHM13v2.012120,434,957 - 120,452,263 (+)NCBI
Sequence:
RefSeq Acc Id: NR_033684
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812120,446,444 - 120,463,749 (+)NCBI
GRCh3712120,884,241 - 120,901,556 (+)RGD
Celera12120,518,953 - 120,536,271 (+)RGD
HuRef12117,893,031 - 117,910,347 (+)RGD
CHM1_112120,852,732 - 120,870,048 (+)NCBI
T2T-CHM13v2.012120,434,957 - 120,452,263 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_789788 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI07146 (Get FASTA)   NCBI Sequence Viewer  
  AAI07147 (Get FASTA)   NCBI Sequence Viewer  
  BAG52859 (Get FASTA)   NCBI Sequence Viewer  
  EAW98193 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000229384.5
  ENSP00000446872
  ENSP00000446872.1
  ENSP00000448397.1
GenBank Protein O43716 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_789788   ⟸   NM_176818
- UniProtKB: Q3B824 (UniProtKB/Swiss-Prot),   B3KSU7 (UniProtKB/Swiss-Prot),   Q3KNR8 (UniProtKB/Swiss-Prot),   O43716 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000229384   ⟸   ENST00000229384
Ensembl Acc Id: ENSP00000448397   ⟸   ENST00000548171
Ensembl Acc Id: ENSP00000446872   ⟸   ENST00000551765

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O43716-F1-model_v2 AlphaFold O43716 1-136 view protein structure

Promoters
RGD ID:6790065
Promoter ID:HG_KWN:16825
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000229384,   NM_016399,   NM_176818,   NR_033684
Position:
Human AssemblyChrPosition (strand)Source
Build 3612119,367,841 - 119,368,662 (+)MPROMDB
RGD ID:7225605
Promoter ID:EPDNEW_H18548
Type:initiation region
Name:GATC_1
Description:glutamyl-tRNA amidotransferase subunit C
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H18549  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812120,446,444 - 120,446,504EPDNEW
RGD ID:7225607
Promoter ID:EPDNEW_H18549
Type:initiation region
Name:GATC_2
Description:glutamyl-tRNA amidotransferase subunit C
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H18548  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812120,459,981 - 120,460,041EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:25068 AgrOrtholog
COSMIC GATC COSMIC
Ensembl Genes ENSG00000257218 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000229384.5 UniProtKB/TrEMBL
  ENST00000548171.1 UniProtKB/TrEMBL
  ENST00000551765 ENTREZGENE
  ENST00000551765.6 UniProtKB/Swiss-Prot
GTEx ENSG00000257218 GTEx
HGNC ID HGNC:25068 ENTREZGENE
Human Proteome Map GATC Human Proteome Map
InterPro Asp/Glu-ADT_csu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Asp/Glu-ADT_sf_sub_c UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:283459 UniProtKB/Swiss-Prot
NCBI Gene 283459 ENTREZGENE
OMIM 617210 OMIM
PANTHER GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT C, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GatC UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
PharmGKB PA162389278 PharmGKB
Superfamily-SCOP SSF141000 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B3KSU7 ENTREZGENE
  F8VRU3_HUMAN UniProtKB/TrEMBL
  GATC_HUMAN UniProtKB/Swiss-Prot
  J3KMY1_HUMAN UniProtKB/TrEMBL
  O43716 ENTREZGENE
  Q3B824 ENTREZGENE
  Q3KNR8 ENTREZGENE
UniProt Secondary B3KSU7 UniProtKB/Swiss-Prot
  Q3B824 UniProtKB/Swiss-Prot
  Q3KNR8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-28 GATC  glutamyl-tRNA amidotransferase subunit C    glutamyl-tRNA(Gln) amidotransferase, subunit C  Symbol and/or name change 5135510 APPROVED
2012-10-30 GATC  glutamyl-tRNA(Gln) amidotransferase, subunit C    glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial)  Symbol and/or name change 5135510 APPROVED