Hip1 (huntingtin interacting protein 1) - Rat Genome Database

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Gene: Hip1 (huntingtin interacting protein 1) Rattus norvegicus
Analyze
Symbol: Hip1
Name: huntingtin interacting protein 1
RGD ID: 620305
Description: Enables clathrin binding activity. Involved in clathrin coat assembly. Located in clathrin-coated vesicle; postsynapse; and presynaptic membrane. Is active in glutamatergic synapse; postsynaptic membrane; and presynapse. Orthologous to human HIP1 (huntingtin interacting protein 1); PARTICIPATES IN Huntington's disease pathway; INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: huntingtin-interacting protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Hypk-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81226,769,868 - 26,904,367 (+)NCBIGRCr8
mRatBN7.21221,133,364 - 21,267,796 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1221,133,406 - 21,267,725 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1222,275,219 - 22,409,598 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01222,887,561 - 23,021,930 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01221,954,027 - 22,088,410 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01224,180,795 - 24,315,373 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1224,180,937 - 24,315,373 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01226,178,145 - 26,312,676 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41222,287,861 - 22,422,163 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11222,396,520 - 22,408,493 (+)NCBI
Celera1222,895,802 - 23,030,274 (+)NCBICelera
Cytogenetic Map12q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cannabidiol  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
clotrimazole  (EXP)
cobalt dichloride  (EXP)
copper(II) sulfate  (ISO)
decabromodiphenyl ether  (EXP)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
ethanol  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
glycine betaine  (EXP)
isotretinoin  (ISO)
ivermectin  (ISO)
kojic acid  (ISO)
methapyrilene  (ISO)
methoxychlor  (EXP)
nickel dichloride  (EXP)
nickel sulfate  (ISO)
nitrofen  (EXP)
p-toluidine  (EXP)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
phosgene  (ISO)
pinostrobin  (ISO)
potassium chromate  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
tamoxifen  (ISO)
testosterone  (EXP)
thimerosal  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. HIP1 and HIP12 display differential binding to F-actin, AP2, and clathrin. Identification of a novel interaction with clathrin light chain. Legendre-Guillemin V, etal., J Biol Chem 2002 May 31;277(22):19897-904.
4. Clathrin- and AP-2-binding sites in HIP1 uncover a general assembly role for endocytic accessory proteins. Mishra SK, etal., J Biol Chem 2001 Dec 7;276(49):46230-6. Epub 2001 Sep 27.
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Partially overlapping distribution of epsin1 and HIP1 at the synapse: analysis by immunoelectron microscopy. Yao PJ, etal., J Comp Neurol. 2006 Jan 10;494(2):368-79.
Additional References at PubMed
PMID:11007801   PMID:11517213   PMID:11532990   PMID:11604514   PMID:11788820   PMID:12477932   PMID:14732715   PMID:15533940   PMID:15906374   PMID:18790740   PMID:20074057   PMID:22871113  


Genomics

Comparative Map Data
Hip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81226,769,868 - 26,904,367 (+)NCBIGRCr8
mRatBN7.21221,133,364 - 21,267,796 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1221,133,406 - 21,267,725 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1222,275,219 - 22,409,598 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01222,887,561 - 23,021,930 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01221,954,027 - 22,088,410 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01224,180,795 - 24,315,373 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1224,180,937 - 24,315,373 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01226,178,145 - 26,312,676 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41222,287,861 - 22,422,163 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11222,396,520 - 22,408,493 (+)NCBI
Celera1222,895,802 - 23,030,274 (+)NCBICelera
Cytogenetic Map12q12NCBI
HIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38775,533,298 - 75,738,941 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl775,533,298 - 75,738,962 (-)EnsemblGRCh38hg38GRCh38
GRCh37775,162,619 - 75,368,259 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36775,001,345 - 75,206,215 (-)NCBINCBI36Build 36hg18NCBI36
Build 34774,808,059 - 75,012,930NCBI
Celera770,031,212 - 70,236,048 (-)NCBICelera
Cytogenetic Map7q11.23NCBI
HuRef770,248,359 - 70,453,525 (-)NCBIHuRef
CHM1_1775,092,714 - 75,298,283 (-)NCBICHM1_1
T2T-CHM13v2.0776,820,630 - 77,026,024 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2774,495,683 - 74,701,354 (-)NCBI
Hip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395135,435,350 - 135,574,167 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5135,435,385 - 135,573,974 (-)EnsemblGRCm39 Ensembl
GRCm385135,406,496 - 135,545,323 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5135,406,531 - 135,545,120 (-)EnsemblGRCm38mm10GRCm38
MGSCv375135,882,388 - 136,020,992 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365135,692,653 - 135,829,742 (-)NCBIMGSCv36mm8
Celera5132,418,220 - 132,556,655 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map575.18NCBI
Hip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545614,392,921 - 14,529,213 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545614,389,282 - 14,529,317 (-)NCBIChiLan1.0ChiLan1.0
HIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2694,215,412 - 94,420,460 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17142,480,052 - 142,685,098 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0768,281,899 - 68,464,233 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1782,187,193 - 82,193,058 (-)NCBIpanpan1.1PanPan1.1panPan2
HIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.166,957,760 - 7,115,676 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl66,961,053 - 7,115,618 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha68,654,406 - 8,812,467 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.066,778,147 - 6,936,340 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl66,778,151 - 6,936,438 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.166,747,968 - 6,905,918 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.066,711,133 - 6,869,280 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.066,874,374 - 7,032,555 (-)NCBIUU_Cfam_GSD_1.0
Hip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344131,467,552 - 131,540,287 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365432,522,154 - 2,565,376 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365432,496,301 - 2,569,019 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl310,416,475 - 10,578,366 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1310,416,418 - 10,578,374 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2310,176,878 - 10,282,562 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1289,805,985 - 10,007,931 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl289,807,672 - 9,914,047 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660706,432,081 - 6,658,245 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474014,464,372 - 14,607,130 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474014,460,742 - 14,607,203 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hip1
1220 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:560
Count of miRNA genes:269
Interacting mature miRNAs:361
Transcripts:ENSRNOT00000030497
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121107382524234895Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382528064557Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121363552330827399Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)121961087024139202Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961088935682913Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121983578938193007Rat
631521Pia12Pristane induced arthritis QTL 128.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)122025941723672083Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat

Markers in Region
D12Rat33  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21221,146,177 - 21,146,418 (+)MAPPERmRatBN7.2
Rnor_6.01224,193,707 - 24,193,945NCBIRnor6.0
Rnor_5.01226,191,010 - 26,191,248UniSTSRnor5.0
RGSC_v3.41222,300,630 - 22,300,868UniSTSRGSC3.4
RGSC_v3.41222,300,576 - 22,300,992RGDRGSC3.4
RGSC_v3.11222,287,675 - 22,287,913RGD
Celera1222,908,570 - 22,908,808UniSTS
RH 3.4 Map12336.2RGD
RH 3.4 Map12336.2UniSTS
RH 2.0 Map12225.2RGD
SHRSP x BN Map1223.8199RGD
FHH x ACI Map1210.1799RGD
Cytogenetic Map12q12UniSTS
BE116737  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21221,145,698 - 21,145,874 (+)MAPPERmRatBN7.2
Rnor_6.01224,193,228 - 24,193,403NCBIRnor6.0
Rnor_5.01226,190,531 - 26,190,706UniSTSRnor5.0
RGSC_v3.41222,300,151 - 22,300,326UniSTSRGSC3.4
Celera1222,908,091 - 22,908,266UniSTS
RH 3.4 Map12337.9UniSTS
Cytogenetic Map12q12UniSTS
RH128125  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21221,267,317 - 21,267,526 (+)MAPPERmRatBN7.2
Rnor_6.01224,314,966 - 24,315,174NCBIRnor6.0
Rnor_5.01226,312,269 - 26,312,477UniSTSRnor5.0
RGSC_v3.41222,421,756 - 22,421,964UniSTSRGSC3.4
Celera1223,029,867 - 23,030,075UniSTS
RH 3.4 Map12338.1UniSTS
Cytogenetic Map12q12UniSTS
RH128368  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21221,185,779 - 21,185,995 (+)MAPPERmRatBN7.2
Rnor_6.01224,233,606 - 24,233,821NCBIRnor6.0
Rnor_5.01226,230,909 - 26,231,124UniSTSRnor5.0
RGSC_v3.41222,340,224 - 22,340,439UniSTSRGSC3.4
Celera1222,948,620 - 22,948,835UniSTS
RH 3.4 Map12339.4UniSTS
Cytogenetic Map12q12UniSTS
RH133161  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21221,264,284 - 21,264,492 (+)MAPPERmRatBN7.2
Rnor_6.01224,311,933 - 24,312,140NCBIRnor6.0
Rnor_5.01226,309,236 - 26,309,443UniSTSRnor5.0
RGSC_v3.41222,418,723 - 22,418,930UniSTSRGSC3.4
Celera1223,026,834 - 23,027,041UniSTS
RH 3.4 Map12338.5UniSTS
Cytogenetic Map12q12UniSTS
AA964673  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21221,265,289 - 21,265,406 (+)MAPPERmRatBN7.2
Rnor_6.01224,312,938 - 24,313,054NCBIRnor6.0
Rnor_5.01226,310,241 - 26,310,357UniSTSRnor5.0
RGSC_v3.41222,419,728 - 22,419,844UniSTSRGSC3.4
Celera1223,027,839 - 23,027,955UniSTS
RH 3.4 Map12338.5UniSTS
Cytogenetic Map12q12UniSTS
AU047037  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21870,634,718 - 70,634,762 (-)MAPPERmRatBN7.2
mRatBN7.21221,166,067 - 21,166,275 (+)MAPPERmRatBN7.2
mRatBN7.2195,470,595 - 95,470,642 (+)MAPPERmRatBN7.2
mRatBN7.298,240,881 - 8,240,924 (-)MAPPERmRatBN7.2
mRatBN7.2717,956,378 - 17,956,423 (-)MAPPERmRatBN7.2
mRatBN7.21071,494,412 - 71,494,456 (-)MAPPERmRatBN7.2
mRatBN7.21710,516,594 - 10,516,637 (-)MAPPERmRatBN7.2
mRatBN7.28107,082,514 - 107,082,558 (+)MAPPERmRatBN7.2
mRatBN7.21945,524,578 - 45,524,621 (-)MAPPERmRatBN7.2
mRatBN7.24168,388,066 - 168,388,109 (-)MAPPERmRatBN7.2
Rnor_6.01224,213,901 - 24,214,110NCBIRnor6.0
Rnor_5.01226,211,204 - 26,211,413UniSTSRnor5.0
RGSC_v3.41222,320,518 - 22,320,727UniSTSRGSC3.4
Celera1222,928,914 - 22,929,123UniSTS
Cytogenetic Map12q12UniSTS
RH135309  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21221,170,851 - 21,171,053 (+)MAPPERmRatBN7.2
Rnor_6.01224,218,687 - 24,218,888NCBIRnor6.0
Rnor_5.01226,215,990 - 26,216,191UniSTSRnor5.0
RGSC_v3.41222,325,304 - 22,325,505UniSTSRGSC3.4
Celera1222,933,700 - 22,933,901UniSTS
RH 3.4 Map12337.6UniSTS
Cytogenetic Map12q12UniSTS
AU048794  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21221,160,147 - 21,160,379 (+)MAPPERmRatBN7.2
mRatBN7.2870,861,070 - 70,862,047 (+)MAPPERmRatBN7.2
Rnor_6.0876,618,937 - 76,619,913NCBIRnor6.0
Rnor_6.01224,207,674 - 24,207,905NCBIRnor6.0
Rnor_5.01226,204,977 - 26,205,208UniSTSRnor5.0
RGSC_v3.41222,314,597 - 22,314,828UniSTSRGSC3.4
RGSC_v3.4874,643,445 - 74,644,421UniSTSRGSC3.4
Celera1222,922,992 - 22,923,225UniSTS
Celera124,359,958 - 4,361,111UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map12q12UniSTS
RH91194  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21221,193,622 - 21,195,182 (+)MAPPERmRatBN7.2
Rnor_6.01224,241,646 - 24,243,205NCBIRnor6.0
Rnor_5.01226,238,949 - 26,240,508UniSTSRnor5.0
RGSC_v3.41222,348,066 - 22,349,625UniSTSRGSC3.4
Celera1222,956,395 - 22,957,954UniSTS
Cytogenetic Map12q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 43 10 6 11 6 2 4 71 35 41 11 2
Low 3 47 35 8 35 6 7 3 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001100475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001415756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC087262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC091503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF388529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000030497   ⟹   ENSRNOP00000031153
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1221,133,408 - 21,267,725 (+)Ensembl
Rnor_6.0 Ensembl1224,180,937 - 24,315,373 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098638   ⟹   ENSRNOP00000088574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1221,190,263 - 21,267,725 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104382   ⟹   ENSRNOP00000078035
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1221,211,411 - 21,267,725 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119935   ⟹   ENSRNOP00000083048
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1221,133,406 - 21,263,011 (+)Ensembl
RefSeq Acc Id: NM_001100475   ⟹   NP_001093945
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81226,769,991 - 26,904,296 (+)NCBI
mRatBN7.21221,133,408 - 21,267,725 (+)NCBI
Rnor_6.01224,180,937 - 24,315,373 (+)NCBI
Rnor_5.01226,178,145 - 26,312,676 (+)NCBI
RGSC_v3.41222,287,861 - 22,422,163 (+)RGD
Celera1222,895,802 - 23,030,274 (+)RGD
Sequence:
RefSeq Acc Id: NM_001415756   ⟹   NP_001402685
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81226,769,947 - 26,904,367 (+)NCBI
mRatBN7.21221,133,364 - 21,267,796 (+)NCBI
RefSeq Acc Id: XM_006249099   ⟹   XP_006249161
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81226,847,953 - 26,904,367 (+)NCBI
mRatBN7.21221,211,402 - 21,267,796 (+)NCBI
Rnor_6.01224,259,296 - 24,313,361 (+)NCBI
Rnor_5.01226,178,145 - 26,312,676 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249100   ⟹   XP_006249162
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81226,826,531 - 26,904,367 (+)NCBI
mRatBN7.21221,189,958 - 21,267,796 (+)NCBI
Rnor_6.01224,238,278 - 24,313,361 (+)NCBI
Rnor_5.01226,178,145 - 26,312,676 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598252   ⟹   XP_017453741
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81226,850,478 - 26,904,367 (+)NCBI
mRatBN7.21221,213,903 - 21,267,785 (+)NCBI
Rnor_6.01224,261,168 - 24,313,361 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598253   ⟹   XP_017453742
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81226,850,478 - 26,904,367 (+)NCBI
mRatBN7.21221,213,903 - 21,267,796 (+)NCBI
Rnor_6.01224,261,168 - 24,313,361 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039089055   ⟹   XP_038944983
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81226,850,478 - 26,904,367 (+)NCBI
mRatBN7.21221,213,903 - 21,267,796 (+)NCBI
RefSeq Acc Id: XM_063271032   ⟹   XP_063127102
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81226,769,868 - 26,904,367 (+)NCBI
RefSeq Acc Id: XM_063271033   ⟹   XP_063127103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81226,769,868 - 26,904,367 (+)NCBI
RefSeq Acc Id: XM_063271034   ⟹   XP_063127104
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81226,826,528 - 26,904,367 (+)NCBI
RefSeq Acc Id: XM_063271035   ⟹   XP_063127105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81226,873,015 - 26,904,367 (+)NCBI
RefSeq Acc Id: XM_063271036   ⟹   XP_063127106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81226,867,778 - 26,904,367 (+)NCBI
RefSeq Acc Id: NP_001093945   ⟸   NM_001100475
- Peptide Label: isoform 1
- UniProtKB: A6J0C8 (UniProtKB/TrEMBL),   A0A8I6GA90 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249162   ⟸   XM_006249100
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AA26 (UniProtKB/TrEMBL),   A6J0C9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249161   ⟸   XM_006249099
- Peptide Label: isoform X3
- UniProtKB: A0A8I5Y6T0 (UniProtKB/TrEMBL),   A6J0C9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453741   ⟸   XM_017598252
- Peptide Label: isoform X1
- UniProtKB: A6J0C9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453742   ⟸   XM_017598253
- Peptide Label: isoform X1
- UniProtKB: A6J0C9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000031153   ⟸   ENSRNOT00000030497
RefSeq Acc Id: XP_038944983   ⟸   XM_039089055
- Peptide Label: isoform X1
- UniProtKB: A6J0C9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000078035   ⟸   ENSRNOT00000104382
RefSeq Acc Id: ENSRNOP00000088574   ⟸   ENSRNOT00000098638
RefSeq Acc Id: ENSRNOP00000083048   ⟸   ENSRNOT00000119935
RefSeq Acc Id: NP_001402685   ⟸   NM_001415756
- Peptide Label: isoform 2
- UniProtKB: G3V8Y8 (UniProtKB/TrEMBL),   A0A8I6GA90 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127102   ⟸   XM_063271032
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063127103   ⟸   XM_063271033
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063127104   ⟸   XM_063271034
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063127106   ⟸   XM_063271036
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063127105   ⟸   XM_063271035
- Peptide Label: isoform X5
Protein Domains
ENTH   I/LWEQ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V8Y8-F1-model_v2 AlphaFold G3V8Y8 1-1030 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698551
Promoter ID:EPDNEW_R9076
Type:initiation region
Name:Hip1_1
Description:huntingtin interacting protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01224,180,986 - 24,181,046EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620305 AgrOrtholog
BioCyc Gene G2FUF-19623 BioCyc
Ensembl Genes ENSRNOG00000001448 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000030497 ENTREZGENE
  ENSRNOT00000030497.5 UniProtKB/TrEMBL
  ENSRNOT00000098638.1 UniProtKB/TrEMBL
  ENSRNOT00000104382.1 UniProtKB/TrEMBL
  ENSRNOT00000119935 ENTREZGENE
  ENSRNOT00000119935.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.1700 UniProtKB/TrEMBL
  1.25.40.90 UniProtKB/TrEMBL
  6.10.250.920 UniProtKB/TrEMBL
  I/LWEQ domain UniProtKB/TrEMBL
InterPro ANTH UniProtKB/TrEMBL
  ENTH_VHS UniProtKB/TrEMBL
  Epsin-like_N UniProtKB/TrEMBL
  HIP1_clath-bd UniProtKB/TrEMBL
  I/LWEQ_dom_sf UniProtKB/TrEMBL
  ILWEQ UniProtKB/TrEMBL
  Sla2_fam UniProtKB/TrEMBL
KEGG Report rno:192154 UniProtKB/TrEMBL
NCBI Gene 192154 ENTREZGENE
PANTHER PTHR10407 UniProtKB/TrEMBL
  PTHR10407:SF14 UniProtKB/TrEMBL
Pfam ANTH UniProtKB/TrEMBL
  HIP1_clath_bdg UniProtKB/TrEMBL
  I_LWEQ UniProtKB/TrEMBL
PhenoGen Hip1 PhenoGen
PROSITE ENTH UniProtKB/TrEMBL
  I_LWEQ UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001448 RatGTEx
SMART ENTH UniProtKB/TrEMBL
  ILWEQ UniProtKB/TrEMBL
Superfamily-SCOP ENTH_VHS UniProtKB/TrEMBL
  SSF109885 UniProtKB/TrEMBL
UniProt A0A8I5Y6T0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AA26 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GA90 ENTREZGENE, UniProtKB/TrEMBL
  A6J0C8 ENTREZGENE, UniProtKB/TrEMBL
  A6J0C9 ENTREZGENE, UniProtKB/TrEMBL
  A6J0D0_RAT UniProtKB/TrEMBL
  G3V8Y8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Hip1  huntingtin interacting protein 1      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Hip1  huntingtin interacting protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL