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Gene: Abcb9 (ATP binding cassette subfamily B member 9) Rattus norvegicus

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Symbol:

Abcb9

Name:

ATP binding cassette subfamily B member 9

RGD ID:

620254

Description:

Predicted to enable ABC-type transporter activity; ATP binding activity; and protein homodimerization activity. Predicted to be involved in peptide metabolic process; peptide transport; and transmembrane transport. Predicted to be located in endoplasmic reticulum membrane and lysosomal membrane. Predicted to be part of ATP-binding activity cassette (ABC) transporter complex. Predicted to be active in membrane. Orthologous to human ABCB9 (ATP binding cassette subfamily B member 9); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ABC transporter 9 protein; ABC-type oligopeptide transporter ABCB9; ATP-binding cassette sub-family B member 9; ATP-binding cassette transporter 9; ATP-binding cassette, sub-family B (MDR/TAP), member 9; ATP-binding cassette, subfamily B (MDR/TAP), member 9; TAP-like ABC transporter; TAP-like protein; Tapl

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	38,146,659 - 38,192,862 (+)	NCBI		GRCr8
mRatBN7.2	12	32,499,213 - 32,531,932 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	32,499,225 - 32,531,931 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	33,679,102 - 33,711,093 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	34,290,446 - 34,322,433 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	33,342,345 - 33,374,330 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	37,923,974 - 37,956,678 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	37,923,528 - 37,958,363 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	39,796,337 - 39,829,041 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	33,623,383 - 33,656,242 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	33,486,770 - 33,519,630 (+)	NCBI
Celera	12	34,193,059 - 34,220,212 (+)	NCBI		Celera
Cytogenetic Map	12	q15	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

short chain acyl-CoA dehydrogenase deficiency (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP)

bisphenol F (EXP,ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloroacetaldehyde (ISO)

chlorpromazine (EXP)

cidofovir anhydrous (ISO)

cisplatin (ISO)

clodronic acid (ISO)

copper atom (EXP)

copper(0) (EXP)

dexamethasone (ISO)

diazinon (ISO)

dioxygen (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

fenofibrate (EXP)

flavonoids (EXP)

fluconazole (EXP)

folic acid (ISO)

ibuprofen (EXP)

ifosfamide (ISO)

indometacin (ISO)

lipopolysaccharide (ISO)

metformin (EXP)

mono(2-ethylhexyl) phthalate (ISO)

okadaic acid (ISO)

paracetamol (ISO)

paraquat (EXP)

progesterone (ISO)

raloxifene (ISO)

resveratrol (ISO)

riddelliine (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (ISO)

titanium dioxide (ISO)

toluene (ISO)

triadimefon (EXP)

trichloroethene (EXP)

triphenyl phosphate (EXP)

triptonide (ISO)

troglitazone (EXP)

urethane (ISO)

valproic acid (ISO)

zidovudine (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

antigen processing and presentation of peptide antigen via MHC class I (ISO)

biological_process (ND)

oligopeptide transmembrane transport (IEA)

peptide metabolic process (IEA,ISO,ISS)

peptide transport (IEA,ISO,ISS)

protein transport (IEA)

transmembrane transport (IBA,IEA)

Cellular Component

ATP-binding cassette (ABC) transporter complex (TAS)

early endosome (ISO)

endoplasmic reticulum (ISO)

endoplasmic reticulum membrane (ISO)

lysosomal membrane (IEA,ISO,ISS)

lysosome (IEA,ISO,ISS)

membrane (IBA,IEA,ISO)

Molecular Function

ABC-type oligopeptide transporter activity (IEA,ISO,ISS)

ABC-type peptide transporter activity (IBA,IEA,ISO)

ABC-type transporter activity (IEA)

ATP binding (IEA,ISO)

ATP hydrolysis activity (IEA)

ATPase-coupled transmembrane transporter activity (TAS)

nucleotide binding (IEA)

protein binding (ISO)

protein homodimerization activity (IEA,ISO)

transmembrane transporter activity (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation
7.	The carboxyl terminal sequence of rat transporter associated with antigen processing (TAP)-like (ABCB9) is heterogeneous due to splicing of its mRNA.	Yamaguchi Y, etal., Biol Pharm Bull 2004 Jan;27(1):100-4.
8.	An ABC transporter homologous to TAP proteins.	Yamaguchi Y, etal., FEBS Lett 1999 Aug 27;457(2):231-6.

Additional References at PubMed

PMID:10748049	PMID:11011155	PMID:15577206	PMID:15863492	PMID:17897319	PMID:17977821	PMID:18434309	PMID:18952056	PMID:22641697

Genomics

Comparative Map Data

Abcb9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	38,146,659 - 38,192,862 (+)	NCBI		GRCr8
mRatBN7.2	12	32,499,213 - 32,531,932 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	32,499,225 - 32,531,931 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	33,679,102 - 33,711,093 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	34,290,446 - 34,322,433 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	33,342,345 - 33,374,330 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	37,923,974 - 37,956,678 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	37,923,528 - 37,958,363 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	39,796,337 - 39,829,041 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	33,623,383 - 33,656,242 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	33,486,770 - 33,519,630 (+)	NCBI
Celera	12	34,193,059 - 34,220,212 (+)	NCBI		Celera
Cytogenetic Map	12	q15	NCBI

ABCB9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	122,918,610 - 122,975,114 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	122,920,951 - 122,981,649 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	123,405,495 - 123,451,010 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	121,979,492 - 122,025,705 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	121,938,426 - 121,975,912	NCBI
Celera	12	123,006,335 - 123,052,545 (-)	NCBI		Celera
Cytogenetic Map	12	q24.31	NCBI
HuRef	12	120,366,970 - 120,412,196 (-)	NCBI		HuRef
CHM1_1	12	123,373,795 - 123,419,356 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	122,913,851 - 122,971,746 (-)	NCBI		T2T-CHM13v2.0

Abcb9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	124,199,920 - 124,234,009 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	124,199,593 - 124,233,861 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	124,061,857 - 124,095,955 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	124,061,530 - 124,095,798 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	124,511,866 - 124,545,807 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	124,322,475 - 124,356,416 (-)	NCBI		MGSCv36	mm8
Celera	5	121,138,027 - 121,171,950 (-)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	63.36	NCBI

Abcb9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	5,817,334 - 5,837,220 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955482	5,817,334 - 5,838,642 (+)	NCBI	ChiLan1.0	ChiLan1.0

ABCB9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	131,002,775 - 131,071,199 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	131,011,036 - 131,067,575 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	120,523,592 - 120,573,322 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	124,768,225 - 124,816,346 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	124,760,277 - 124,815,853 (-)	Ensembl	panpan1.1		panPan2

VPS37B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	6,594,981 - 6,621,902 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	6,595,030 - 6,620,408 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	6,756,791 - 6,783,698 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	6,844,105 - 6,871,052 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	6,844,140 - 6,871,052 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	6,776,943 - 6,803,891 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	6,869,672 - 6,896,611 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	6,823,302 - 6,850,224 (+)	NCBI		UU_Cfam_GSD_1.0

Abcb9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	157,761,120 - 157,789,628 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936558	1,689,388 - 1,718,869 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936558	1,689,832 - 1,718,306 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ABCB9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	29,904,174 - 29,935,560 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	29,895,752 - 29,935,571 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	31,583,965 - 31,624,411 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ABCB9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	118,269,654 - 118,308,703 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	118,269,655 - 118,308,764 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	126,998,033 - 127,043,807 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Abcb9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	22,952,120 - 22,971,267 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	22,952,518 - 22,971,525 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Abcb9
412 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	347
Count of miRNA genes:	208
Interacting mature miRNAs:	235
Transcripts:	ENSRNOT00000045223, ENSRNOT00000063961, ENSRNOT00000064620
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	24805022	52308831	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	25989355	52308831	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1331739	Hrtrt14	Heart rate QTL 14	3.56232		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	12	1	38687564	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	18473041	52308831	Rat
1300162	Bp188	Blood pressure QTL 188	3.19		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	37764145	51558799	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15264248	52308831	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	1	38635130	Rat
70169	Eae13	Experimental allergic encephalomyelitis QTL 13		0.032	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	12	29775522	42298555	Rat
1600386	Calcic2	Intracellular calcium level QTL 2		0.001	platelet physiology trait (VT:0005464)	platelet intracellular calcium level (CMO:0000922)	12	33700432	46784661	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	17464979	46784661	Rat
1556747	Calcic1	Intracellular calcium level QTL 1		3.6	platelet calcium amount (VT:0010500)	platelet intracellular calcium level (CMO:0000922)	12	33700432	46784661	Rat
1300175	Cm5	Cardiac mass QTL 5	3.78		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	33700432	51558799	Rat
631829	Alc6	Alcohol consumption QTL 6	4.7		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	12	34243475	43352593	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	16187438	52308831	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	16135029	52308831	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	51213550	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	18473041	52308831	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	16135029	52308831	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_022238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271610	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB027520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB116264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB116265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000045223 ⟹ ENSRNOP00000051058

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	32,499,225 - 32,524,426 (+)	Ensembl
Rnor_6.0 Ensembl	12	37,923,528 - 37,958,363 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098844 ⟹ ENSRNOP00000096168

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	32,499,225 - 32,531,931 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114288 ⟹ ENSRNOP00000083417

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	32,499,225 - 32,522,922 (+)	Ensembl

RefSeq Acc Id:

NM_022238 ⟹ NP_071574

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,160,152 - 38,192,862 (+)	NCBI
mRatBN7.2	12	32,499,213 - 32,531,932 (+)	NCBI
Rnor_6.0	12	37,923,974 - 37,956,678 (+)	NCBI
Rnor_5.0	12	39,796,337 - 39,829,041 (+)	NCBI
RGSC_v3.4	12	33,623,383 - 33,656,242 (+)	RGD
Celera	12	34,193,059 - 34,220,212 (+)	RGD

Sequence:

show sequence

GTGTAGCGGCGCAGCGCCGGCTCCGAGCAGAGCGGTGCTCAGCGCGGGCTCAGTGAGAGGCAGG
ATCCTGTGTCTCTGCGTCCCGGGCACGGCGCGTCACCTTCTGACGACTCACCTGGTGGCAGGTG
GCAGGTGTGGCCTTACCCGGCTGTCAGTGATGGCCTTGCCCCGGTGAGCCAAAGCCTGCCCCTG
TCACCCGCCGGCCGCCAGCCAGCAGGATGAGGCTGTGGAAGGCGGTAGTGGTGACGCTGGCCTT
CGTGAGCATGGACGTCGGCGTGACCACGGCCATCTATGCCTTCAGCCACCTGGATCGCAGCCTG
CTGGAGGACATCCGACACTTTAACATCTTCGACTCGGTGCTGGACCTCTGGGCTGCCTGCCTGT
ACCGCAGCTGCCTGCTGCTGGGGGCTACCATCGGTGTGGCCAAGAACAGCGCTCTGGGGCCACG
GCGCCTGCGGGCCTCGTGGCTCGTCATCACCCTCGTGTGCCTCTTTGTGGGCATCTATGCCATG
GCCAAACTGCTACTCTTCTCAGAGGTGCGCAGGCCCATCCGGGACCCATGGTTCTGGGCGCTCT
TCGTATGGACCTACATCTCGCTGGCTGCCTCCTTCCTGCTGTGGGGGCTGCTGGCCACCGTGCG
GCCGGACGCGGAGGCCCTGGAGCCGGGGAACGAGGGCTTCCACGGTGAGGGTGGGGCCCCTGCT
GAGCAGGCATCAGGGGCCACGCTGCAGAAGCTGCTGTCCTACACAAAGCCTGATGTGGCCTTCC
TAGTAGCTGCCTCTTTCTTCCTCATCGTAGCGGCTCTGGGAGAGACCTTCCTGCCCTACTACAC
TGGCCGGGCCATCGACAGCATCGTCATCCAGAAAAGCATGGACCAGTTCACCACGGCCGTCGTC
GTCGTCTGCCTGCTGGCCATCGGCAGCTCATTGGCCGCAGGTATTCGGGGCGGCATTTTCACCC
TCGTATTTGCCAGACTGAACATTCGCCTTCGCAACTGTCTCTTCCGCTCCCTGGTGTCACAGGA
GACGAGCTTCTTTGACGAGAATCGCACAGGGGACCTCATCTCCCGCCTCACCTCTGACACCACC
ATGGTCAGCGACCTGGTCTCCCAGAACATCAACATCTTCCTGAGGAACACGGTCAAGGTCACGG
GCGTGGTGGTCTTCATGTTCAGCCTCTCCTGGCAGCTCTCCCTGGTCACCTTCATGGGCTTCCC
CATCATCATGATGGTGTCCAACATCTACGGCAAGTACTACAAGAGGCTCTCCAAGGAGGTCCAG
AGTGCCCTGGCCAGAGCCAGCACCACAGCCGAGGAGACCATCAGCGCCATGAAGACGGTCCGCA
GCTTTGCCAATGAGGAAGAGGAGGCAGAGGTGTTCCTGCGGAAGCTTCAGCAGGTCTACAAGCT
GAACAGGAAGGAGGCCGCAGCCTACATGTCCTACGTCTGGGGCAGTGGGCTCACACTCCTGGTG
GTCCAGGTCAGTATCCTCTACTACGGGGGCCACCTCGTCATCTCGGGGCAGATGAGCAGCGGCA
ACCTCATCGCCTTCATCATCTATGAGTTTGTCCTGGGAGACTGCATGGAGTCCGTGGGCTCCGT
CTATAGCGGCCTGATGCAGGGAGTGGGGGCTGCTGAGAAGGTGTTCGAGTTCATTGACCGGCAG
CCAACCATGGTGCATGACGGAAGATTGGCCCCTGACCATCTCGAGGGCAGGGTGGACTTTGAGA
ATGTAACCTTCACCTACCGCACTCGGCCCCACACACAGGTCCTACAGAATGTCTCCTTCAGCCT
GTCCCCAGGCAAGGTGACGGCTCTGGTGGGGCCCTCGGGCAGCGGAAAGAGCTCCTGTGTGAAC
ATCCTGGAGAACTTCTACCCTCTGCAGGGCGGCCGGGTGTTGTTGGACGGCGAGCCCATCGGCG
CCTATGACCACAAGTACCTGCACCGCGTGATCTCACTGGTAAGCCAGGAGCCTGTGCTGTTCGC
CCGCTCCATCACAGACAACATCTCCTACGGCCTGCCTACCGTGCCCTTCGAGATGGTGGTGGAG
GCTGCACAGAAGGCCAATGCTCACGGCTTCATCATGGAGCTGCAGGACGGATACAGCACAGAGA
CCGGGGAAAAGGGAGCCCAGCTGTCAGGTGGCCAGAAGCAGCGGGTGGCCATGGCACGTGCACT
AGTGCGGAACCCTCCTGTGCTCATCCTGGACGAAGCCACCAGTGCCCTGGACGCAGAGAGTGAA
TACCTGATTCAGCAGGCCATCCACGGCAACCTGCAGAGACACACGGTGCTGATCATCGCACACC
GGCTGAGTACTGTAGAGCGGGCGCACCTCATCGTGGTGCTAGACAAGGGCCGTGTGGTACAGCA
GGGTACACACCAGCAGCTGTTGGCACAGGGCGGCCTCTATGCCAAGCTGGTGCAGCGTCAGATG
CTGGGGCTCGAGCACCCCTTGGACTACACGGCTGGCCACAAGGAGCCACCCAGCAACACTGAAC
ACAAGGCCTGACAGTGGCCCCGGGCTGAAGCGCTGGAGGCGACCTGCCGAGTCCCACTCTTGCT
TCCTGCATCTTGCCTCCTTCCACTTGCTCCCCAGGCACCCACCAGCTGCCATGGGCTTACCCCC
TTCTACTGTGTCCCATCTTGGCTCCTCCAGGCCTGCCAAGGTAGAACAGCCTTTTTATACCAAG
CTAGCAGGGTTTTTACTGCTCAGTTCAACGCACTCCAGTCAACTCCTAGATTTCAAAAACACCT
TTTTGGGACTGGCAGTGAGCAAGCTCACTAGGATGTTTTCAAGACTTCTGAGCCAGGAGTGCAC
GACCCTTTCTAACTGCCTGGAAGATGTCTGGGAGAGAACTAAGCACTACCCTTTGCCTCTGGGA
GAAGCAGCTTCCCTGTCCCTAGGGGGACACAAGGGTTGGCCTTCCATCCTTCCAGTCTCCCGGC
TCTGTGAGTCAGGCCAGAGGTGGGGCAAGAGAGTGGGAGGTGCCCACTGCCTATCACCCCTTGC
CAATCAAAGCCAGTCTCACTGTGAACCACCAGAACCTCAGCAGAGGAGGGGCTGGCCAGGCCTG
GTGGGCCTCGGGGTGCCCTCAGCCCCACACCCAGCACTTGAACCCTTCATCCTTTCCCCTGGCT
GGCACCTTCCCCTCCTGTCCACCCCTGCAACTCTGCAGAGGAACCTTGTTTGTAAGATGTATTC
TCAGATTGGTGGAGGGGACCGAGGCAATGCCCAGGGTCTGGCTTTGTCCTGGTTTAAGATTTTG
GGAGAACTGGGTCAATAAAGTGTACTACCTCTGACCTCT

hide sequence

RefSeq Acc Id:

XM_039089718 ⟹ XP_038945646

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,166,419 - 38,192,862 (+)	NCBI
mRatBN7.2	12	32,505,972 - 32,531,932 (+)	NCBI

RefSeq Acc Id:

XM_063271610 ⟹ XP_063127680

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,146,659 - 38,192,862 (+)	NCBI

RefSeq Acc Id:

XM_063271611 ⟹ XP_063127681

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,165,714 - 38,184,297 (+)	NCBI

RefSeq Acc Id:

XM_063271612 ⟹ XP_063127682

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,165,714 - 38,191,767 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_071574	(Get FASTA)	NCBI Sequence Viewer
	XP_038945646	(Get FASTA)	NCBI Sequence Viewer
	XP_063127680	(Get FASTA)	NCBI Sequence Viewer
	XP_063127681	(Get FASTA)	NCBI Sequence Viewer
	XP_063127682	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAA85306	(Get FASTA)	NCBI Sequence Viewer
	BAD10852	(Get FASTA)	NCBI Sequence Viewer
	BAD10853	(Get FASTA)	NCBI Sequence Viewer
	EDM13606	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000051058.5
	ENSRNOP00000083417
	ENSRNOP00000083417.1
	ENSRNOP00000096168
	ENSRNOP00000096168.1
GenBank Protein	Q9QYJ4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_071574 ⟸ NM_022238

- UniProtKB:

Q764Q5 (UniProtKB/Swiss-Prot), Q764Q6 (UniProtKB/Swiss-Prot), Q9QYJ4 (UniProtKB/Swiss-Prot), A6J117 (UniProtKB/TrEMBL), A0A0A0MY39 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRLWKAVVVTLAFVSMDVGVTTAIYAFSHLDRSLLEDIRHFNIFDSVLDLWAACLYRSCLLLGA
TIGVAKNSALGPRRLRASWLVITLVCLFVGIYAMAKLLLFSEVRRPIRDPWFWALFVWTYISLA
ASFLLWGLLATVRPDAEALEPGNEGFHGEGGAPAEQASGATLQKLLSYTKPDVAFLVAASFFLI
VAALGETFLPYYTGRAIDSIVIQKSMDQFTTAVVVVCLLAIGSSLAAGIRGGIFTLVFARLNIR
LRNCLFRSLVSQETSFFDENRTGDLISRLTSDTTMVSDLVSQNINIFLRNTVKVTGVVVFMFSL
SWQLSLVTFMGFPIIMMVSNIYGKYYKRLSKEVQSALARASTTAEETISAMKTVRSFANEEEEA
EVFLRKLQQVYKLNRKEAAAYMSYVWGSGLTLLVVQVSILYYGGHLVISGQMSSGNLIAFIIYE
FVLGDCMESVGSVYSGLMQGVGAAEKVFEFIDRQPTMVHDGRLAPDHLEGRVDFENVTFTYRTR
PHTQVLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFYPLQGGRVLLDGEPIGAYDHKYLHR
VISLVSQEPVLFARSITDNISYGLPTVPFEMVVEAAQKANAHGFIMELQDGYSTETGEKGAQLS
GGQKQRVAMARALVRNPPVLILDEATSALDAESEYLIQQAIHGNLQRHTVLIIAHRLSTVERAH
LIVVLDKGRVVQQGTHQQLLAQGGLYAKLVQRQMLGLEHPLDYTAGHKEPPSNTEHKA

hide sequence

Ensembl Acc Id:

ENSRNOP00000051058 ⟸ ENSRNOT00000045223

RefSeq Acc Id:	XP_038945646 ⟸ XM_039089718
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000096168 ⟸ ENSRNOT00000098844

Ensembl Acc Id:

ENSRNOP00000083417 ⟸ ENSRNOT00000114288

RefSeq Acc Id:	XP_063127680 ⟸ XM_063271610
- Peptide Label:	isoform X1
- UniProtKB:	Q9QYJ4 (UniProtKB/Swiss-Prot), Q764Q6 (UniProtKB/Swiss-Prot), Q764Q5 (UniProtKB/Swiss-Prot), A0A0A0MY39 (UniProtKB/TrEMBL), A6J117 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127682 ⟸ XM_063271612
- Peptide Label:	isoform X4
- UniProtKB:	A0A0A0MY39 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127681 ⟸ XM_063271611
- Peptide Label:	isoform X3
- UniProtKB:	A0A0A0MY39 (UniProtKB/TrEMBL)

Protein Domains

ABC transmembrane type-1 ABC transporter

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9QYJ4-F1-model_v2	AlphaFold	Q9QYJ4	1-762	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620254	AgrOrtholog
BioCyc Gene	G2FUF-19341	BioCyc
Ensembl Genes	ENSRNOG00000001082	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000045223.6	UniProtKB/Swiss-Prot
	ENSRNOT00000098844	ENTREZGENE
	ENSRNOT00000098844.1	UniProtKB/Swiss-Prot
	ENSRNOT00000114288	ENTREZGENE
	ENSRNOT00000114288.1	UniProtKB/Swiss-Prot
Gene3D-CATH	1.20.1560.10	UniProtKB/Swiss-Prot
	3.40.50.300	UniProtKB/Swiss-Prot
InterPro	AAA+_ATPase	UniProtKB/Swiss-Prot
	ABC1_TM_dom	UniProtKB/Swiss-Prot
	ABC1_TM_sf	UniProtKB/Swiss-Prot
	ABC_transporter-like	UniProtKB/Swiss-Prot
	ABC_transporter_CS	UniProtKB/Swiss-Prot
	ABCB9	UniProtKB/Swiss-Prot
	P-loop_NTPase	UniProtKB/Swiss-Prot
	Type_I_exporter	UniProtKB/Swiss-Prot
KEGG Report	rno:63886	UniProtKB/Swiss-Prot
NCBI Gene	63886	ENTREZGENE
PANTHER	ATP BINDING CASSETTE SUBFAMILY B MEMBER 9	UniProtKB/Swiss-Prot
	ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL	UniProtKB/Swiss-Prot
Pfam	ABC_membrane	UniProtKB/Swiss-Prot
	ABC_tran	UniProtKB/Swiss-Prot
PhenoGen	Abcb9	PhenoGen
PIRSF	ABC_prm/ATPase_B	UniProtKB/Swiss-Prot
PRINTS	TAP1PROTEIN	UniProtKB/Swiss-Prot
PROSITE	ABC_TM1F	UniProtKB/Swiss-Prot
	ABC_TRANSPORTER_1	UniProtKB/Swiss-Prot
	ABC_TRANSPORTER_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000001082	RatGTEx
SMART	AAA	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot
	SSF90123	UniProtKB/Swiss-Prot
UniProt	A0A0A0MY39	ENTREZGENE, UniProtKB/TrEMBL
	A0A8A1U8V2_RAT	UniProtKB/TrEMBL
	A0A8A1UBD1_RAT	UniProtKB/TrEMBL
	A6J117	ENTREZGENE, UniProtKB/TrEMBL
	ABCB9_RAT	UniProtKB/Swiss-Prot
	Q764Q5	ENTREZGENE
	Q764Q6	ENTREZGENE
	Q9QYJ4	ENTREZGENE
UniProt Secondary	Q764Q5	UniProtKB/Swiss-Prot
	Q764Q6	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-12-09	Abcb9	ATP binding cassette subfamily B member 9	Abcb9	ATP-binding cassette, subfamily B (MDR/TAP), member 9	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-11-16	Abcb9	ATP-binding cassette, subfamily B (MDR/TAP), member 9	Abcb9	ATP-binding cassette, sub-family B (MDR/TAP), member 9	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Abcb9	ATP-binding cassette, sub-family B (MDR/TAP), member 9		TAP-like ABC transporter	Name updated	1299863	APPROVED
2002-08-07	Abcb9	TAP-like ABC transporter			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_protein	sequence has 762 amino acids	632226

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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