Rad9b (RAD9 checkpoint clamp component B)

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Gene: Rad9b (RAD9 checkpoint clamp component B) Rattus norvegicus

Analyze

Symbol:

Rad9b

Name:

RAD9 checkpoint clamp component B

RGD ID:

1308223

Description:

Predicted to have 3'-5' exonuclease activity. Predicted to be involved in DNA integrity checkpoint; DNA repair; and cellular response to ionizing radiation. Predicted to localize to checkpoint clamp complex. Orthologous to human RAD9B (RAD9 checkpoint clamp component B); INTERACTS WITH bisphenol A; endosulfan; testosterone.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

cell cycle checkpoint control protein RAD9B; cell cycle checkpoint control protein RAD9B homolog; DNA repair exonuclease rad9 homolog B; LOC363924; MGC124758; RAD9 homolog B (S. cerevisiae); RAD9 homolog B (S. pombe)

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RAD9B (RAD9 checkpoint clamp component B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Rad9b (RAD9 checkpoint clamp component B)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Rad9b (RAD9 checkpoint clamp component B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RAD9B (RAD9 checkpoint clamp component B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RAD9B (RAD9 checkpoint clamp component B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rad9b (RAD9 checkpoint clamp component B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RAD9B (RAD9 checkpoint clamp component B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	RAD9B (RAD9 checkpoint clamp component B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rad9b (RAD9 checkpoint clamp component B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RAD9B (RAD9 checkpoint clamp component B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Rad9b (RAD9 checkpoint clamp component B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	rad9b (RAD9 checkpoint clamp component B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	hpr-9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Rad9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	12	34,217,868 - 34,248,380 (+)	NCBI
Rnor_6.0 Ensembl	12	39,699,181 - 39,729,516 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	12	39,699,076 - 39,731,218 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	12	41,579,810 - 41,613,266 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	35,412,463 - 35,443,713 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	12	35,275,850 - 35,306,721 (+)	NCBI
Celera	12	35,888,883 - 35,919,190 (+)	NCBI		Celera
Cytogenetic Map	12	q16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

neural tube defect (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

bisphenol A (EXP)

choline (ISO)

endosulfan (EXP)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

L-methionine (ISO)

methyl methanesulfonate (ISO)

resveratrol (ISO)

sunitinib (ISO)

testosterone (EXP)

triphenyl phosphate (EXP)

triptonide (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to ionizing radiation (IBA)

DNA repair (IBA)

DNA replication checkpoint signaling (IBA)

mitotic intra-S DNA damage checkpoint signaling (IBA)

nucleic acid phosphodiester bond hydrolysis (IEA)

Cellular Component

checkpoint clamp complex (IBA)

Molecular Function

3'-5' exonuclease activity (IBA)

protein binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated data pipeline
3.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:14500360	PMID:15489334

Genomics

Comparative Map Data

Rad9b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	12	34,217,868 - 34,248,380 (+)	NCBI
Rnor_6.0 Ensembl	12	39,699,181 - 39,729,516 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	12	39,699,076 - 39,731,218 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	12	41,579,810 - 41,613,266 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	35,412,463 - 35,443,713 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	12	35,275,850 - 35,306,721 (+)	NCBI
Celera	12	35,888,883 - 35,919,190 (+)	NCBI		Celera
Cytogenetic Map	12	q16	NCBI

RAD9B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	12	110,501,655 - 110,532,086 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	12	110,501,655 - 110,533,556 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	12	110,501,651 - 110,534,632 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	12	110,940,136 - 110,971,361 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	109,424,483 - 109,454,274 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	12	109,402,819 - 109,432,609	NCBI
Celera	12	110,566,764 - 110,596,591 (+)	NCBI
Cytogenetic Map	12	q24.11	NCBI
HuRef	12	107,958,134 - 107,988,078 (+)	NCBI		HuRef
CHM1_1	12	110,907,815 - 110,937,557 (+)	NCBI		CHM1_1

Rad9b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	122,461,286 - 122,492,297 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	5	122,461,286 - 122,492,296 (-)	Ensembl
GRCm38	5	122,323,223 - 122,354,270 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	122,323,223 - 122,354,233 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	122,775,517 - 122,804,204 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	5	122,586,125 - 122,614,812 (-)	NCBI			mm8
Celera	5	119,407,984 - 119,436,658 (-)	NCBI		Celera
Cytogenetic Map	5	F	NCBI

Rad9b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	7,405,608 - 7,440,995 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955482	7,405,520 - 7,459,240 (+)	NCBI	ChiLan1.0	ChiLan1.0

RAD9B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	12	111,467,881 - 111,497,803 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	111,467,845 - 111,498,350 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	12	108,072,061 - 108,103,338 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

RAD9B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	8,309,384 - 8,333,414 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	8,309,592 - 8,343,424 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	8,473,060 - 8,496,997 (+)	NCBI
ROS_Cfam_1.0	26	8,567,351 - 8,591,512 (+)	NCBI
UMICH_Zoey_3.1	26	8,526,316 - 8,550,455 (+)	NCBI
UNSW_CanFamBas_1.0	26	8,585,107 - 8,609,239 (+)	NCBI
UU_Cfam_GSD_1.0	26	8,540,581 - 8,564,740 (+)	NCBI

Rad9b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	155,989,042 - 156,020,345 (-)	NCBI
SpeTri2.0	NW_004936558	3,462,187 - 3,489,741 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAD9B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	31,871,719 - 31,903,417 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	31,869,570 - 31,903,485 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	33,791,210 - 33,825,462 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RAD9B
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	105,738,247 - 105,772,539 (+)	NCBI
ChlSab1.1 Ensembl	11	105,738,867 - 105,772,002 (+)	Ensembl

Rad9b
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624747	21,360,253 - 21,399,223 (-)	NCBI

Position Markers

AW529993

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	12	39,729,324 - 39,729,473	NCBI	Rnor6.0
Rnor_5.0	12	41,610,351 - 41,610,500	UniSTS	Rnor5.0
RGSC_v3.4	12	35,443,519 - 35,443,668	UniSTS	RGSC3.4
Celera	12	35,918,996 - 35,919,145	UniSTS
RH 3.4 Map	12	597.8	UniSTS
Cytogenetic Map	12	q16	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9590086	Insglur6	Insulin/glucose ratio QTL 6	18.97	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	12	150810	45150810	Rat
9590147	Scort7	Serum corticosterone level QTL 7	13.61	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	12	150810	45150810	Rat
7411545	Bw128	Body weight QTL 128	5.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	150810	45150810	Rat
7411586	Foco5	Food consumption QTL 5	5.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	150810	45150810	Rat
7411660	Foco28	Food consumption QTL 28	10.9	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	150810	45150810	Rat
7411595	Foco9	Food consumption QTL 9	4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	150810	45150810	Rat
8694179	Bw150	Body weight QTL 150	2.9	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	150810	45150810	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	492578	45492578	Rat
737979	Pia22	Pristane induced arthritis QTL 22	53.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2475687	47475687	Rat
634351	Apr5	Acute phase response QTL 5	6.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	12	2513442	47513442	Rat
2302042	Pia38	Pristane induced arthritis QTL 38	3.5	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	2513442	47513442	Rat
634350	Apr4	Acute phase response QTL 4	6		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	4210051	49210051	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	9223626	52716770	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	9223626	52716770	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	9223626	52716770	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	9223626	52716770	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	9223626	52716770	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	9223626	52716770	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	9223630	52716770	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	9789834	52716770	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	13127211	50320041	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	14419775	52716770	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15021986	52716770	Rat
61421	Cia12	Collagen induced arthritis QTL 12	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	15714609	41291738	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	15908900	52716770	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	15908900	52716770	Rat
631543	Bp83	Blood pressure QTL 83	5.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	17185580	44098244	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	18342477	52716770	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	18342477	52716770	Rat
2302060	Pia37	Pristane induced arthritis QTL 37	6.1	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	18729043	52716770	Rat
1549902	Bp269	Blood pressure QTL 269			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	18752593	52716770	Rat
1549912	Bp268	Blood pressure QTL 268			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	18752593	52716770	Rat
737822	Alc10	Alcohol consumption QTL 10	2.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	12	22650702	45946937	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	22650702	48598906	Rat
61324	Eae5	Experimental allergic encephalomyelitis QTL 5	14		nervous system integrity trait (VT:0010566)	percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)	12	22650702	52716770	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	22650721	41291738	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	22876297	43799153	Rat
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	24906590	52716770	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	26098845	52716770	Rat
70169	Eae13	Experimental allergic encephalomyelitis QTL 13		0.032	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	12	27190240	42196641	Rat
8693658	Alc33	Alcohol consumption QTL 33	2.1	0.68	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	29113609	49560679	Rat
8693635	Alc28	Alcohol consumption QTL 28	2.7	0.439	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	29113609	50757185	Rat
1556747	Calcic1	Intracellular calcium level QTL 1		3.6	platelet calcium amount (VT:0010500)	platelet intracellular calcium level (CMO:0000922)	12	31723565	47433663	Rat
1300175	Cm5	Cardiac mass QTL 5	3.78		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	31723565	51955754	Rat
1600386	Calcic2	Intracellular calcium level QTL 2		0.001	platelet physiology trait (VT:0005464)	platelet intracellular calcium level (CMO:0000922)	12	31723565	52716770	Rat
1331787	Rf41	Renal function QTL 41	2.998		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	12	31723688	45946802	Rat
631829	Alc6	Alcohol consumption QTL 6	4.7		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	12	32289782	43305579	Rat
1300162	Bp188	Blood pressure QTL 188	3.19		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	37521884	51955754	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	52
Count of miRNA genes:	45
Interacting mature miRNAs:	48
Transcripts:	ENSRNOT00000048454
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium											14
Low	3	43	57	41	19	41	8	11	74	35	27	11	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001030042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769242	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598412	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC104314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC099750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000048454 ⟹ ENSRNOP00000042520

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	39,699,181 - 39,729,516 (+)	Ensembl

RefSeq Acc Id:

NM_001030042 ⟹ NP_001025213

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	34,218,024 - 34,248,374 (+)	NCBI
Rnor_6.0	12	39,699,181 - 39,729,518 (+)	NCBI
Rnor_5.0	12	41,579,810 - 41,613,266 (+)	NCBI
RGSC_v3.4	12	35,412,463 - 35,443,713 (+)	RGD
Celera	12	35,888,883 - 35,919,190 (+)	RGD

Sequence:

show sequence

GAGAAAAAAAAACGGTGCTGCGAGAAATTCCTCGCGGGTGGGGCAAGGTAGAAGCGGAGCGGGC
GGAAAGTGAGAGCAACATCCGGGCACCTGCGTCTGGAGCGCTTCTGCCCGCCATGCCTCCTTTT
CCCGTAGCCATGCTGAAGTGTGGGATGACGGGCGGTCAGGTGAAAGTGTTTGGGAAAGCAATTC
AAACTCTATCACGAGTGAGCGATGAACTGTGGCTAGACCCGTCTGAAAAAGGTCTTGCTCTGAG
ATCTGTGAATTCTTGTCATTCCACATATGGCTACGTCCTGTTCTCGTCTGTGTTTTTTCAACAT
TATCAATGGTCCCCCTCAGCCACGATAACAGACAGTGACATACCACTGAATTTAAATTGCAAAC
TGGCAATAAAGTCAATCCTGCCAATCTTTAGATGTCTGAATTACCTTGAAAGAAGCATAGAGAA
GTGTACAATGGTCGCCAGATCGGACAGATGCAGAGTCGTCATCCAGTTCTTCGGCAGGCATGGT
ATTAAAAGAACTCACAATGTGTATTTCCAAGACTGCCAGCCCTTGAAAATTCTCTTTGAAAAGA
GCTTGTGTGCGAACATCCTGATGATTAAACCAAGACTGCTGGCTGAGGCCATTGCTCTTCTAAC
ATCGAATCAAGAGGAAGTCACCTTCTCCGTTACCCCAGAGAATTTCTGCCTCAAGAGCTCGAGT
GGGGAATCACTGGATTTAACCAGCTCTGTGTACAGTGAGATGTCTTTTGGCCCGGAAGAGTTTG
ACTTCTTTCAGGTTGGACTTGATACCGAGATAACCTTTTGCTTTAAAGAACTGAAGGGGATCCT
CACCTTCTCAGAAGTGATGCACGCACCCATTGCCATCTACTTTGACTTTCCTGGAAAACCAGTT
GTTCTGAGTGTGGAAGACATGCTCTTGGAGGCGAGCTTTATCCTGGCCACCTTATTGGACTATC
CAAGTAGAACATCTTCACCACAGTCACTGCGCCTTTCCCAGGCACGAAGGTCAGACCCCACACT
GTCCGGTGCTCAGGAGGGTAAAAGCCGAGTCAGCCAGACCCCAGAGAGCATCTCTCGAGCAGCG
CCCAAAAGGCTGTTTCCCAAGGATCCTCCTGACAGCAGCTCTGCAGCAGAGACCAGGAGAGCCA
GCGCCAGCCAGGATGACATCTCCGAGGTGCCTGAGAGTGTTGTCAGTGATATGGAGGAAGGGCA
AAGTCCCTCACCCCTCAGAAAGTTTTCCTGCATGTTCTTTGGAGCAGTATCTTGTGAACAGCAA
GAGCATGCCAACCACCCCTTGGGCAGTCTGGCAGTAGCAAGCGACAGTGAACAGGACGCGAGTG
GATGAACGTCCACGCTAAGGCTGTAATAGCCACACCGGGCGCTTGGCTCCCTGAAGGCCAAGGG
GAAACTGAGCAAACTGTCCCAGGATGCCCTGGAGACAGTGTCTCTGCTCTTGCCAGGATCACTG
TGCACTAAAATCTGTGTCACTTGGGGGACAGAGCTGGCCGCACAAGGATGAGCCATCGGGGTTA
GATGCCACTGTTTAACCCTGCAGCCTTGGCATGTCCCCTGTGGATCCCTAAGGCAGACTTCCCT
CAGCATCTGGGTGAGGTGGAGCTTCTGTACCTGACAGCAGCCTTCCAGCTTATGTGAGACCTGA
CAGGCTTTGTTCAGTGTTGTTTTTCAGAGTAGAGAAAAGGTGGTGAATAAAAGACATACAGTTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006249366 ⟹ XP_006249428

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	39,699,167 - 39,731,218 (+)	NCBI
Rnor_5.0	12	41,579,810 - 41,613,266 (+)	NCBI

Sequence:

show sequence

GTCTTTCCCCGTCAGAGAAAAAAAAACGGTGCTGCGAGAAATTCCTCGCGGGTGGGGCAAGGTA
GAAGCGGAGCGGGCGGAAAGTGAGAGCAACATCCGGGCACCTGCGTCTGGAGCGCTTCTGCCCG
CCATGCCTCCTTTTCCCGTAGCCATGCTGAAGTGTGGGATGACGGGCGGTCAGGTGAAAGGTGG
AGCGGCCGTTCTTGCTTTGCTACTTAGAAGAAGGAAAGTCTAACGCCTGTGAAGGGTCTCCATC
GTCCTCTTAGGCTTCCTCTGCCTTTCTTCGCCACGACTGACACCGCGAAGCCGGGCCTTACCGC
GCCCCTCACGAGGGCCCTGTTGGGCTTCGAGTAGCATGCCAGTCCCGTTCCTTTTATTTATGCA
TAGTATTTAATTTGGCGTCCAAGAAACGAATTGAGCCATTGGGCCTTAAGCTCGGATGGCCGAG
GGCTAATGTGGGGAGAAGTGGAAGGGAAAAATAATACTTGACCAGCGAAAGTAGTTTTGAGCTG
AGGGGGAAAAAAAACTTGCTCTTTATCTGAGATTCTTTATCCGAAGACATTTTTAATATATGGT
CCCGAACAAGCCTCTATGTCACTCTGTCGAAGAATGAGACTAATATTGACACCTTCGTTGATAA
AGGTTGTTAGAGGAATGGACTAAAAGTCCATGTAATGAATGAGCTGAACAATTAGGACTATGTG
GAGAACTCTTGGACTGGGAACGGGGTTTGTGGGTAGACAGACAATTTGCTTGGCCCTGTCTTCC
ATCCCTCTGCAGAGGTTAGGAGAACTCAAAAGAACAAAATAAATGGGAGTATTAGCATGGAAAT
TGGCTGGCAGGAAAAAACAATTTTGCTGAATTTTATATCGATTCATATTTTATTTGAGTTCTTG
CTATGTATGTAGTGTTTGGGAAAGCAATTCAAACTCTATCACGAGTGAGCGATGAACTGTGGCT
AGACCCGTCTGAAAAAGGTCTTGCTCTGAGATCTGTGAATTCTTGTCATTCCACATATGGCTAC
GTCCTGTTCTCGTCTGTGTTTTTTCAACATTATCAATGGTCCCCCTCAGCCACGATAACAGACA
GTGACATACCACTGAATTTAAATTGCAAACTGGCAATAAAGTCAATCCTGCCAATCTTTAGATG
TCTGAATTACCTTGAAAGAAGCATAGAGAAGTGTACAATGGTCGCCAGATCGGACAGATGCAGA
GTCGTCATCCAGTTCTTCGGCAGGCATGGTATTAAAAGAACTCACAATGTGTATTTCCAAGACT
GCCAGCCCTTGAAAATTCTCTTTGAAAAGAGCTTGTGTGCGAACATCCTGATGATTAAACCAAG
ACTGCTGGCTGAGGCCATTGCTCTTCTAACATCGAATCAAGAGGAAGTCACCTTCTCCGTTACC
CCAGAGAATTTCTGCCTCAAGAGCTCGAGTGGGGAATCACTGGATTTAACCAGCTCTGTGTACA
GTGAGATGTCTTTTGGCCCGGAAGAGTTTGACTTCTTTCAGGTTGGACTTGATACCGAGATAAC
CTTTTGCTTTAAAGAACTGAAGGGGATCCTCACCTTCTCAGAAGTGATGCACGCACCCATTGCC
ATCTACTTTGACTTTCCTGGAAAACCAGTTGTTCTGAGTGTGGAAGACATGCTCTTGGAGGCGA
GCTTTATCCTGGCCACCTTATTGGACTATCCAAGTAGAACATCTTCACCACAGTCACTGCGCCT
TTCCCAGGCACGAAGGTCAGACCCCACACTGTCCGGTGCTCAGGAGGGTAAAAGCCGAGTCAGC
CAGACCCCAGAGAGCATCTCTCGAGCAGCGCCCAAAAGGCTGTTTCCCAAGGATCCTCCTGACA
GCAGCTCTGCAGCAGAGACCAGGAGAGCCAGCGCCAGCCAGGATGACATCTCCGAGGTGCCTGA
GAGTGTTGTCAGTGATATGGAGGAAGGGCAAAGTCCCTCACCCCTCAGAAAGTTTTCCTGCATG
TTCTTTGGAGCAGTATCTTGTGAACAGCAAGAGCATGCCAACCACCCCTTGGGCAGTCTGGCAG
TAGCAAGCGACAGTGAACAGGACGCGAGTGGATGAACGTCCACGCTAAGGCTGTAATAGCCACA
CCGGGCGCTTGGCTCCCTGAAGGCCAAGGGGAAACTGAGCAAACTGTCCCAGGATGCCCTGGAG
ACAGTGTCTCTGCTCTTGCCAGGATCACTGTGCACTAAAATCTGTGTCACTTGGGGGACAGAGC
TGGCCGCACAAGGATGAGCCATCGGGGTTAGATGCCACTGTTTAACCCTGCAGCCTTGGCATGT
CCCCTGTGGATCCCTAAGGCAGACTTCCCTCAGCATCTGGGTGAGGTGGAGCTTCTGTACCTGA
CAGCAGCCTTCCAGCTTATGTGAGACCTGACAGGCTTTGTTCAGTGTTGTTTTTCAGAGTAGAG
AAAAGGTGGTGAATAAAAGACATACAGTTAACTTCACTTTGTGGTCATTTTATATATTACACGA
TTTTATTTCCTGGCCCTCAGCTGCTCTGGTTCCTGTCTGCTATGCAGTGGGATGCAGAGAGCAT
GCAGTGAAGTCGGTATGAGTCACCGGCACACACAGCGGCCGCTGAGCTCAGCCTGGAGTGGAAC
AAGGTAAGGGGGCAGAGGACAAATGCCTGTCCACTGCTCCTCTCAGGTCTAGCTGCTTACATGC
ACAGATTAAAAACCTGGCACAAAACACACTGATGTAACTTATTATGCTGTAGGACTCTCTCCCA
AACCAGTGTACAGTGGTTGCAGGCTACAGGAGTCTTTGGAACATCTTATTGCTAAGTCCTTGGA
AACCATCAGACCGTAAGGAAATGTCAAGCAGCAGGCCAGCCACCGTACTTCACACTCAGCGTTG
CCTACGTGGATCAGATGCTGCAGACGTGTGAGCAGAGTTCTAGCTGAAACAGTGACTGGGTTCT
TGTAGCTTAGCAATGACTCACAGCTGCCCACAGTAACCTAATAAAAACCCAACTTCACCAACTT
CATCCCAAAATGTCCCTCTGTGAATGAAAATGGGCTTTCAAGAAGCTTTTTGTGGAAACTGGCA
GTGCCCACCTATCTCAGCCTTGTCCTCTGTTGTAGGCTGAAGATTTATGAATCTCATGTTTACA
CTGATCACTGGATTGCAGACATTTCTGCCCAGCACACATGGCTGCAGAGCAGCTGTGGGTCTCC
TGCTGAGAACGGCCTGGGCTCACCCTGATGCAGCTTCCCAAGCACCTTGGCCAGCGCAGCCTGG
CTACAGCACTAATCTGCACAAGACGGTGACACTGTGACACTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGCTCATGTGATGGAATCTAGGCCCTTGCACATCCCAG
GTCAGTGCTCTGCTACAGAGCTCCCCACCCCTCACAGCGGCCTTTCTGGTGGCTCCGTCACTCA
GTACTGTCTGGAAGGACACTGATGGCTCCAGCTGTAAACTCTCTGTTTTACACTCAACTGTCGT
CCATTTTGGTGAACTTCTGAGGAAGATAAGGAGCTGCTGATGACAGGCCACGCTGCTCTGGCTC
AGATGGTAAAGCACGAAGGACACGGCTCTGTGGTGCTGGCTCACTGTCAGGTAGACCAAGAAGC
TTGGAGTTGGGATGTGACGGAGACAATCTGAGCGTCGGTGCTTTAGCCCCTGACCGTTCACACC
AAAGGAGTGGCACGTAGTATAAATACTGTATTTATTAAATATCCTTACAGTTTATTTAAATGTA
TTTACAGAACTATTCCTGCATAAGTTATATTTCAGACATCGATCAGGTCATTGCCTCTGGTAGG
ACAAACAATGATAGTCTCGACAGAACACGCAGCTCATTAGCACAGACTCAGATTTGCTCGTCGT
TACTATCTTTGCCACCAACTTCCTGCTAACAGTCACGTTTTGACATGGTCACTGCTCTATTGAG
AAGTTCAATTTTGTGATAATTTACTTTTTTCAAAGAAATAGAATCCAAATTCTTGTTTCATATT
TTGTTTTATAAGCAGATTTTTGCAAATTTTTTTAAATGTAAAACTGTGACAGTCTCCAGAGAAA
CTGAGTGTTACAACTTGGCCAGAGAGAGCTGCTGTACAGTGACAAGAAGCCATGAACCTACTCT
AAA

hide sequence

RefSeq Acc Id:

XM_008769241 ⟹ XP_008767463

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	34,218,030 - 34,248,380 (+)	NCBI
Rnor_6.0	12	39,699,167 - 39,731,218 (+)	NCBI

Sequence:

show sequence

GTCTTTCCCCGTCAGAGAAAAAAAAACGGTGCTGCGAGAAATTCCTCGCGGGTGGGGCAAGGTA
GAAGCGGAGCGGGCGGAAAGTGAGAGCAACATCCGGGCACCTGCGTCTGGAGCGCTTCTGCCCG
CCATGCCTCCTTTTCCCGTAGCCATGCTGAAGTGTGGGATGACGGGCGGTCAGGTGAAAGTGTT
TGGGAAAGCAATTCAAACTCTATCACGAGTGAGCGATGAACTGTGGCTAGACCCGTCTGAAAAA
GGTCTTGCTCTGAGATCTGTGAATTCTTGTCATTCCACATATGGCTACGTCCTGTTCTCGTCTG
TGTTTTTTCAACATTATCAATGGTCCCCCTCAGCCACGATAACAGACAGTGACATACCACTGAA
TTTAAATTGCAAACTGGCAATAAAGTCAATCCTGCCAATCTTTAGATGTCTGAATTACCTTGAA
AGAAGCATAGAGAAGTGTACAATGGTCGCCAGATCGGACAGATGCAGAGTCGTCATCCAGTTCT
TCGGCAGGCATGGTATTAAAAGAACTCACAATGTGTATTTCCAAGACTGCCAGCCCTTGAAAAT
TCTCTTTGAAAAGAGCTTGTGTGCGAACATCCTGATGATTAAACCAAGACTGCTGGCTGAGGCC
ATTGCTCTTCTAACATCGAATCAAGAGGAAGTCACCTTCTCCGTTACCCCAGAGAATTTCTGCC
TCAAGAGCTCGAGTGGGGAATCACTGGATTTAACCAGCTCTGTGTACAGTGAGATGTCTTTTGG
CCCGGAAGAGTTTGACTTCTTTCAGGTTGGACTTGATACCGAGATAACCTTTTGCTTTAAAGAA
CTGAAGGGGATCCTCACCTTCTCAGAAGTGATGCACGCACCCATTGCCATCTACTTTGACTTTC
CTGGAAAGTCAGACCCCACACTGTCCGGTGCTCAGGAGGGTAAAAGCCGAGTCAGCCAGACCCC
AGAGAGCATCTCTCGAGCAGCGCCCAAAAGGCTGTTTCCCAAGGATCCTCCTGACAGCAGCTCT
GCAGCAGAGACCAGGAGAGCCAGCGCCAGCCAGGATGACATCTCCGAGGTGCCTGAGAGTGTTG
TCAGTGATATGGAGGAAGGGCAAAGTCCCTCACCCCTCAGAAAGTTTTCCTGCATGTTCTTTGG
AGCAGTATCTTGTGAACAGCAAGAGCATGCCAACCACCCCTTGGGCAGTCTGGCAGTAGCAAGC
GACAGTGAACAGGACGCGAGTGGATGAACGTCCACGCTAAGGCTGTAATAGCCACACCGGGCGC
TTGGCTCCCTGAAGGCCAAGGGGAAACTGAGCAAACTGTCCCAGGATGCCCTGGAGACAGTGTC
TCTGCTCTTGCCAGGATCACTGTGCACTAAAATCTGTGTCACTTGGGGGACAGAGCTGGCCGCA
CAAGGATGAGCCATCGGGGTTAGATGCCACTGTTTAACCCTGCAGCCTTGGCATGTCCCCTGTG
GATCCCTAAGGCAGACTTCCCTCAGCATCTGGGTGAGGTGGAGCTTCTGTACCTGACAGCAGCC
TTCCAGCTTATGTGAGACCTGACAGGCTTTGTTCAGTGTTGTTTTTCAGAGTAGAGAAAAGGTG
GTGAATAAAAGACATACAGTTAACTTCACTTTGTGGTCATTTTATATATTACACGATTTTATTT
CCTGGCCCTCAGCTGCTCTGGTTCCTGTCTGCTATGCAGTGGGATGCAGAGAGCATGCAGTGAA
GTCGGTATGAGTCACCGGCACACACAGCGGCCGCTGAGCTCAGCCTGGAGTGGAACAAGGTAAG
GGGGCAGAGGACAAATGCCTGTCCACTGCTCCTCTCAGGTCTAGCTGCTTACATGCACAGATTA
AAAACCTGGCACAAAACACACTGATGTAACTTATTATGCTGTAGGACTCTCTCCCAAACCAGTG
TACAGTGGTTGCAGGCTACAGGAGTCTTTGGAACATCTTATTGCTAAGTCCTTGGAAACCATCA
GACCGTAAGGAAATGTCAAGCAGCAGGCCAGCCACCGTACTTCACACTCAGCGTTGCCTACGTG
GATCAGATGCTGCAGACGTGTGAGCAGAGTTCTAGCTGAAACAGTGACTGGGTTCTTGTAGCTT
AGCAATGACTCACAGCTGCCCACAGTAACCTAATAAAAACCCAACTTCACCAACTTCATCCCAA
AATGTCCCTCTGTGAATGAAAATGGGCTTTCAAGAAGCTTTTTGTGGAAACTGGCAGTGCCCAC
CTATCTCAGCCTTGTCCTCTGTTGTAGGCTGAAGATTTATGAATCTCATGTTTACACTGATCAC
TGGATTGCAGACATTTCTGCCCAGCACACATGGCTGCAGAGCAGCTGTGGGTCTCCTGCTGAGA
ACGGCCTGGGCTCACCCTGATGCAGCTTCCCAAGCACCTTGGCCAGCGCAGCCTGGCTACAGCA
CTAATCTGCACAAGACGGTGACACTGTGACACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGCTCATGTGATGGAATCTAGGCCCTTGCACATCCCAGGTCAGTGC
TCTGCTACAGAGCTCCCCACCCCTCACAGCGGCCTTTCTGGTGGCTCCGTCACTCAGTACTGTC
TGGAAGGACACTGATGGCTCCAGCTGTAAACTCTCTGTTTTACACTCAACTGTCGTCCATTTTG
GTGAACTTCTGAGGAAGATAAGGAGCTGCTGATGACAGGCCACGCTGCTCTGGCTCAGATGGTA
AAGCACGAAGGACACGGCTCTGTGGTGCTGGCTCACTGTCAGGTAGACCAAGAAGCTTGGAGTT
GGGATGTGACGGAGACAATCTGAGCGTCGGTGCTTTAGCCCCTGACCGTTCACACCAAAGGAGT
GGCACGTAGTATAAATACTGTATTTATTAAATATCCTTACAGTTTATTTAAATGTATTTACAGA
ACTATTCCTGCATAAGTTATATTTCAGACATCGATCAGGTCATTGCCTCTGGTAGGACAAACAA
TGATAGTCTCGACAGAACACGCAGCTCATTAGCACAGACTCAGATTTGCTCGTCGTTACTATCT
TTGCCACCAACTTCCTGCTAACAGTCACGTTTTGACATGGTCACTGCTCTATTGAGAAGTTCAA
TTTTGTGATAATTTACTTTTTTCAAAGAAATAGAATCCAAATTCTTGTTTCATATTTTGTTTTA
TAAGCAGATTTTTGCAAATTTTTTTAAATGTAAAACTGTGACAGTCTCCAGAGAAACTGAGTGT
TACAACTTGGCCAGAGAGAGCTGCTGTACAGTGACAAGAAGCCATGAACCTACTCTAAA

hide sequence

RefSeq Acc Id:

XM_008769242 ⟹ XP_008767464

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	34,218,043 - 34,248,380 (+)	NCBI
Rnor_6.0	12	39,699,167 - 39,731,218 (+)	NCBI

Sequence:

show sequence

GTCTTTCCCCGTCAGAGAAAAAAAAACGGTGCTGCGAGAAATTCCTCGCGGGTGGGGCAAGGTA
GAAGCGGAGCGGGCGGAAAGTGAGAGCAACATCCGGGCACCTGCGTCTGGAGCGCTTCTGCCCG
CCATGCCTCCTTTTCCCGTAGCCATGCTGAAGTGTGGGATGACGGGCGGTCAGGTGAAAGTGTT
TGGGAAAGCAATTCAAACTCTATCACGAGTGAGCGATGAACTGTGGCTAGACCCGTCTGAAAAA
GGTGTAACTTGCTCTGAGATCTGTGAATTCTTGTCATTCCACATATGGCTACGTCCTGTTCTCG
TCTGTGTTTTTTCAACATTATCAATGGTCCCCCTCAGCCACGATAACAGACAGTGACATACCAC
TGAATTTAAATTGCAAACTGGCAATAAAGTCAATCCTGCCAATCTTTAGATGTCTGAATTACCT
TGAAAGAAGCATAGAGAAGTGTACAATGGTCGCCAGATCGGACAGATGCAGAGTCGTCATCCAG
TTCTTCGGCAGGCATGGTATTAAAAGAACTCACAATGTGTATTTCCAAGACTGCCAGCCCTTGA
AAATTCTCTTTGAAAAGAGCTTGTGTGCGAACATCCTGATGATTAAACCAAGACTGCTGGCTGA
GGCCATTGCTCTTCTAACATCGAATCAAGAGGAAGTCACCTTCTCCGTTACCCCAGAGAATTTC
TGCCTCAAGAGCTCGAGTGGGGAATCACTGGATTTAACCAGCTCTGTGTACAGTGAGATGTCTT
TTGGCCCGGAAGAGTTTGACTTCTTTCAGGTTGGACTTGATACCGAGATAACCTTTTGCTTTAA
AGAACTGAAGGGGATCCTCACCTTCTCAGAAGTGATGCACGCACCCATTGCCATCTACTTTGAC
TTTCCTGGAAAACCAGTTGTTCTGAGTGTGGAAGACATGCTCTTGGAGGCGAGCTTTATCCTGG
CCACCTTATTGGACTATCCAAGTAGAACATCTTCACCACAGTCACTGCGCCTTTCCCAGGCACG
AAGGTCAGACCCCACACTGTCCGGTGCTCAGGAGGGTAAAAGCCGAGTCAGCCAGACCCCAGAG
AGCATCTCTCGAGCAGCGCCCAAAAGGCTGTTTCCCAAGGATCCTCCTGACAGCAGCTCTGCAG
CAGAGACCAGGAGAGCCAGCGCCAGCCAGGATGACATCTCCGAGGTGCCTGAGAGTGTTGTCAG
TGATATGGAGGAAGGGCAAAGTCCCTCACCCCTCAGAAAGTTTTCCTGCATGTTCTTTGGAGCA
GTATCTTGTGAACAGCAAGAGCATGCCAACCACCCCTTGGGCAGTCTGGCAGTAGCAAGCGACA
GTGAACAGGACGCGAGTGGATGAACGTCCACGCTAAGGCTGTAATAGCCACACCGGGCGCTTGG
CTCCCTGAAGGCCAAGGGGAAACTGAGCAAACTGTCCCAGGATGCCCTGGAGACAGTGTCTCTG
CTCTTGCCAGGATCACTGTGCACTAAAATCTGTGTCACTTGGGGGACAGAGCTGGCCGCACAAG
GATGAGCCATCGGGGTTAGATGCCACTGTTTAACCCTGCAGCCTTGGCATGTCCCCTGTGGATC
CCTAAGGCAGACTTCCCTCAGCATCTGGGTGAGGTGGAGCTTCTGTACCTGACAGCAGCCTTCC
AGCTTATGTGAGACCTGACAGGCTTTGTTCAGTGTTGTTTTTCAGAGTAGAGAAAAGGTGGTGA
ATAAAAGACATACAGTTAACTTCACTTTGTGGTCATTTTATATATTACACGATTTTATTTCCTG
GCCCTCAGCTGCTCTGGTTCCTGTCTGCTATGCAGTGGGATGCAGAGAGCATGCAGTGAAGTCG
GTATGAGTCACCGGCACACACAGCGGCCGCTGAGCTCAGCCTGGAGTGGAACAAGGTAAGGGGG
CAGAGGACAAATGCCTGTCCACTGCTCCTCTCAGGTCTAGCTGCTTACATGCACAGATTAAAAA
CCTGGCACAAAACACACTGATGTAACTTATTATGCTGTAGGACTCTCTCCCAAACCAGTGTACA
GTGGTTGCAGGCTACAGGAGTCTTTGGAACATCTTATTGCTAAGTCCTTGGAAACCATCAGACC
GTAAGGAAATGTCAAGCAGCAGGCCAGCCACCGTACTTCACACTCAGCGTTGCCTACGTGGATC
AGATGCTGCAGACGTGTGAGCAGAGTTCTAGCTGAAACAGTGACTGGGTTCTTGTAGCTTAGCA
ATGACTCACAGCTGCCCACAGTAACCTAATAAAAACCCAACTTCACCAACTTCATCCCAAAATG
TCCCTCTGTGAATGAAAATGGGCTTTCAAGAAGCTTTTTGTGGAAACTGGCAGTGCCCACCTAT
CTCAGCCTTGTCCTCTGTTGTAGGCTGAAGATTTATGAATCTCATGTTTACACTGATCACTGGA
TTGCAGACATTTCTGCCCAGCACACATGGCTGCAGAGCAGCTGTGGGTCTCCTGCTGAGAACGG
CCTGGGCTCACCCTGATGCAGCTTCCCAAGCACCTTGGCCAGCGCAGCCTGGCTACAGCACTAA
TCTGCACAAGACGGTGACACTGTGACACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGCTCATGTGATGGAATCTAGGCCCTTGCACATCCCAGGTCAGTGCTCTG
CTACAGAGCTCCCCACCCCTCACAGCGGCCTTTCTGGTGGCTCCGTCACTCAGTACTGTCTGGA
AGGACACTGATGGCTCCAGCTGTAAACTCTCTGTTTTACACTCAACTGTCGTCCATTTTGGTGA
ACTTCTGAGGAAGATAAGGAGCTGCTGATGACAGGCCACGCTGCTCTGGCTCAGATGGTAAAGC
ACGAAGGACACGGCTCTGTGGTGCTGGCTCACTGTCAGGTAGACCAAGAAGCTTGGAGTTGGGA
TGTGACGGAGACAATCTGAGCGTCGGTGCTTTAGCCCCTGACCGTTCACACCAAAGGAGTGGCA
CGTAGTATAAATACTGTATTTATTAAATATCCTTACAGTTTATTTAAATGTATTTACAGAACTA
TTCCTGCATAAGTTATATTTCAGACATCGATCAGGTCATTGCCTCTGGTAGGACAAACAATGAT
AGTCTCGACAGAACACGCAGCTCATTAGCACAGACTCAGATTTGCTCGTCGTTACTATCTTTGC
CACCAACTTCCTGCTAACAGTCACGTTTTGACATGGTCACTGCTCTATTGAGAAGTTCAATTTT
GTGATAATTTACTTTTTTCAAAGAAATAGAATCCAAATTCTTGTTTCATATTTTGTTTTATAAG
CAGATTTTTGCAAATTTTTTTAAATGTAAAACTGTGACAGTCTCCAGAGAAACTGAGTGTTACA
ACTTGGCCAGAGAGAGCTGCTGTACAGTGACAAGAAGCCATGAACCTACTCTAAA

hide sequence

RefSeq Acc Id:

XM_008769243 ⟹ XP_008767465

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	34,217,983 - 34,248,380 (+)	NCBI
Rnor_6.0	12	39,699,076 - 39,731,218 (+)	NCBI

Sequence:

show sequence

CTTCCTCAGGCACCTCGCTGACCCGCCCACTTCTTCCGCCACCAATGAGACGACGAGTTTGCGA
GAGACTGTCCTACGGCGGCCCTGTTTGGGAAAGCAATTCAAACTCTATCACGAGTGAGCGATGA
ACTGTGGCTAGACCCGTCTGAAAAAGCTTGCTCTGAGATCTGTGAATTCTTGTCATTCCACATA
TGGCTACGTCCTGTTCTCGTCTGTGTTTTTTCAACATTATCAATGGTCCCCCTCAGCCACGATA
ACAGACAGTGACATACCACTGAATTTAAATTGCAAACTGGCAATAAAGTCAATCCTGCCAATCT
TTAGATGTCTGAATTACCTTGAAAGAAGCATAGAGAAGTGTACAATGGTCGCCAGATCGGACAG
ATGCAGAGTCGTCATCCAGTTCTTCGGCAGGCATGGTATTAAAAGAACTCACAATGTGTATTTC
CAAGACTGCCAGCCCTTGAAAATTCTCTTTGAAAAGAGCTTGTGTGCGAACATCCTGATGATTA
AACCAAGACTGCTGGCTGAGGCCATTGCTCTTCTAACATCGAATCAAGAGGAAGTCACCTTCTC
CGTTACCCCAGAGAATTTCTGCCTCAAGAGCTCGAGTGGGGAATCACTGGATTTAACCAGCTCT
GTGTACAGTGAGATGTCTTTTGGCCCGGAAGAGTTTGACTTCTTTCAGGTTGGACTTGATACCG
AGATAACCTTTTGCTTTAAAGAACTGAAGGGGATCCTCACCTTCTCAGAAGTGATGCACGCACC
CATTGCCATCTACTTTGACTTTCCTGGAAAACCAGTTGTTCTGAGTGTGGAAGACATGCTCTTG
GAGGCGAGCTTTATCCTGGCCACCTTATTGGACTATCCAAGTAGAACATCTTCACCACAGTCAC
TGCGCCTTTCCCAGGCACGAAGGTCAGACCCCACACTGTCCGGTGCTCAGGAGGGTAAAAGCCG
AGTCAGCCAGACCCCAGAGAGCATCTCTCGAGCAGCGCCCAAAAGGCTGTTTCCCAAGGATCCT
CCTGACAGCAGCTCTGCAGCAGAGACCAGGAGAGCCAGCGCCAGCCAGGATGACATCTCCGAGG
TGCCTGAGAGTGTTGTCAGTGATATGGAGGAAGGGCAAAGTCCCTCACCCCTCAGAAAGTTTTC
CTGCATGTTCTTTGGAGCAGTATCTTGTGAACAGCAAGAGCATGCCAACCACCCCTTGGGCAGT
CTGGCAGTAGCAAGCGACAGTGAACAGGACGCGAGTGGATGAACGTCCACGCTAAGGCTGTAAT
AGCCACACCGGGCGCTTGGCTCCCTGAAGGCCAAGGGGAAACTGAGCAAACTGTCCCAGGATGC
CCTGGAGACAGTGTCTCTGCTCTTGCCAGGATCACTGTGCACTAAAATCTGTGTCACTTGGGGG
ACAGAGCTGGCCGCACAAGGATGAGCCATCGGGGTTAGATGCCACTGTTTAACCCTGCAGCCTT
GGCATGTCCCCTGTGGATCCCTAAGGCAGACTTCCCTCAGCATCTGGGTGAGGTGGAGCTTCTG
TACCTGACAGCAGCCTTCCAGCTTATGTGAGACCTGACAGGCTTTGTTCAGTGTTGTTTTTCAG
AGTAGAGAAAAGGTGGTGAATAAAAGACATACAGTTAACTTCACTTTGTGGTCATTTTATATAT
TACACGATTTTATTTCCTGGCCCTCAGCTGCTCTGGTTCCTGTCTGCTATGCAGTGGGATGCAG
AGAGCATGCAGTGAAGTCGGTATGAGTCACCGGCACACACAGCGGCCGCTGAGCTCAGCCTGGA
GTGGAACAAGGTAAGGGGGCAGAGGACAAATGCCTGTCCACTGCTCCTCTCAGGTCTAGCTGCT
TACATGCACAGATTAAAAACCTGGCACAAAACACACTGATGTAACTTATTATGCTGTAGGACTC
TCTCCCAAACCAGTGTACAGTGGTTGCAGGCTACAGGAGTCTTTGGAACATCTTATTGCTAAGT
CCTTGGAAACCATCAGACCGTAAGGAAATGTCAAGCAGCAGGCCAGCCACCGTACTTCACACTC
AGCGTTGCCTACGTGGATCAGATGCTGCAGACGTGTGAGCAGAGTTCTAGCTGAAACAGTGACT
GGGTTCTTGTAGCTTAGCAATGACTCACAGCTGCCCACAGTAACCTAATAAAAACCCAACTTCA
CCAACTTCATCCCAAAATGTCCCTCTGTGAATGAAAATGGGCTTTCAAGAAGCTTTTTGTGGAA
ACTGGCAGTGCCCACCTATCTCAGCCTTGTCCTCTGTTGTAGGCTGAAGATTTATGAATCTCAT
GTTTACACTGATCACTGGATTGCAGACATTTCTGCCCAGCACACATGGCTGCAGAGCAGCTGTG
GGTCTCCTGCTGAGAACGGCCTGGGCTCACCCTGATGCAGCTTCCCAAGCACCTTGGCCAGCGC
AGCCTGGCTACAGCACTAATCTGCACAAGACGGTGACACTGTGACACTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTCATGTGATGGAATCTAGGCCCTTGCAC
ATCCCAGGTCAGTGCTCTGCTACAGAGCTCCCCACCCCTCACAGCGGCCTTTCTGGTGGCTCCG
TCACTCAGTACTGTCTGGAAGGACACTGATGGCTCCAGCTGTAAACTCTCTGTTTTACACTCAA
CTGTCGTCCATTTTGGTGAACTTCTGAGGAAGATAAGGAGCTGCTGATGACAGGCCACGCTGCT
CTGGCTCAGATGGTAAAGCACGAAGGACACGGCTCTGTGGTGCTGGCTCACTGTCAGGTAGACC
AAGAAGCTTGGAGTTGGGATGTGACGGAGACAATCTGAGCGTCGGTGCTTTAGCCCCTGACCGT
TCACACCAAAGGAGTGGCACGTAGTATAAATACTGTATTTATTAAATATCCTTACAGTTTATTT
AAATGTATTTACAGAACTATTCCTGCATAAGTTATATTTCAGACATCGATCAGGTCATTGCCTC
TGGTAGGACAAACAATGATAGTCTCGACAGAACACGCAGCTCATTAGCACAGACTCAGATTTGC
TCGTCGTTACTATCTTTGCCACCAACTTCCTGCTAACAGTCACGTTTTGACATGGTCACTGCTC
TATTGAGAAGTTCAATTTTGTGATAATTTACTTTTTTCAAAGAAATAGAATCCAAATTCTTGTT
TCATATTTTGTTTTATAAGCAGATTTTTGCAAATTTTTTTAAATGTAAAACTGTGACAGTCTCC
AGAGAAACTGAGTGTTACAACTTGGCCAGAGAGAGCTGCTGTACAGTGACAAGAAGCCATGAAC
CTACTCTAAA

hide sequence

RefSeq Acc Id:

XM_008769244 ⟹ XP_008767466

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	34,218,116 - 34,248,380 (+)	NCBI
Rnor_6.0	12	39,699,268 - 39,731,218 (+)	NCBI

Sequence:

show sequence

CACCTGCGTCTGGAGCGCTTCTGCCCGCCATGCCTCCTTTTCCCGTAGCCATGCTGAAGTGTGG
GATGACGGGCGGTCAGTGTTTGGGAAAGCAATTCAAACTCTATCACGAGTGAGCGATGAACTGT
GGCTAGACCCGTCTGAAAAAGGTCTTGCTCTGAGATCTGTGAATTCTTGTCATTCCACATATGG
CTACGTCCTGTTCTCGTCTGTGTTTTTTCAACATTATCAATGGTCCCCCTCAGCCACGATAACA
GACAGTGACATACCACTGAATTTAAATTGCAAACTGGCAATAAAGTCAATCCTGCCAATCTTTA
GATGTCTGAATTACCTTGAAAGAAGCATAGAGAAGTGTACAATGGTCGCCAGATCGGACAGATG
CAGAGTCGTCATCCAGTTCTTCGGCAGGCATGGTATTAAAAGAACTCACAATGTGTATTTCCAA
GACTGCCAGCCCTTGAAAATTCTCTTTGAAAAGAGCTTGTGTGCGAACATCCTGATGATTAAAC
CAAGACTGCTGGCTGAGGCCATTGCTCTTCTAACATCGAATCAAGAGGAAGTCACCTTCTCCGT
TACCCCAGAGAATTTCTGCCTCAAGAGCTCGAGTGGGGAATCACTGGATTTAACCAGCTCTGTG
TACAGTGAGATGTCTTTTGGCCCGGAAGAGTTTGACTTCTTTCAGGTTGGACTTGATACCGAGA
TAACCTTTTGCTTTAAAGAACTGAAGGGGATCCTCACCTTCTCAGAAGTGATGCACGCACCCAT
TGCCATCTACTTTGACTTTCCTGGAAAACCAGTTGTTCTGAGTGTGGAAGACATGCTCTTGGAG
GCGAGCTTTATCCTGGCCACCTTATTGGACTATCCAAGTAGAACATCTTCACCACAGTCACTGC
GCCTTTCCCAGGCACGAAGGTCAGACCCCACACTGTCCGGTGCTCAGGAGGGTAAAAGCCGAGT
CAGCCAGACCCCAGAGAGCATCTCTCGAGCAGCGCCCAAAAGGCTGTTTCCCAAGGATCCTCCT
GACAGCAGCTCTGCAGCAGAGACCAGGAGAGCCAGCGCCAGCCAGGATGACATCTCCGAGGTGC
CTGAGAGTGTTGTCAGTGATATGGAGGAAGGGCAAAGTCCCTCACCCCTCAGAAAGTTTTCCTG
CATGTTCTTTGGAGCAGTATCTTGTGAACAGCAAGAGCATGCCAACCACCCCTTGGGCAGTCTG
GCAGTAGCAAGCGACAGTGAACAGGACGCGAGTGGATGAACGTCCACGCTAAGGCTGTAATAGC
CACACCGGGCGCTTGGCTCCCTGAAGGCCAAGGGGAAACTGAGCAAACTGTCCCAGGATGCCCT
GGAGACAGTGTCTCTGCTCTTGCCAGGATCACTGTGCACTAAAATCTGTGTCACTTGGGGGACA
GAGCTGGCCGCACAAGGATGAGCCATCGGGGTTAGATGCCACTGTTTAACCCTGCAGCCTTGGC
ATGTCCCCTGTGGATCCCTAAGGCAGACTTCCCTCAGCATCTGGGTGAGGTGGAGCTTCTGTAC
CTGACAGCAGCCTTCCAGCTTATGTGAGACCTGACAGGCTTTGTTCAGTGTTGTTTTTCAGAGT
AGAGAAAAGGTGGTGAATAAAAGACATACAGTTAACTTCACTTTGTGGTCATTTTATATATTAC
ACGATTTTATTTCCTGGCCCTCAGCTGCTCTGGTTCCTGTCTGCTATGCAGTGGGATGCAGAGA
GCATGCAGTGAAGTCGGTATGAGTCACCGGCACACACAGCGGCCGCTGAGCTCAGCCTGGAGTG
GAACAAGGTAAGGGGGCAGAGGACAAATGCCTGTCCACTGCTCCTCTCAGGTCTAGCTGCTTAC
ATGCACAGATTAAAAACCTGGCACAAAACACACTGATGTAACTTATTATGCTGTAGGACTCTCT
CCCAAACCAGTGTACAGTGGTTGCAGGCTACAGGAGTCTTTGGAACATCTTATTGCTAAGTCCT
TGGAAACCATCAGACCGTAAGGAAATGTCAAGCAGCAGGCCAGCCACCGTACTTCACACTCAGC
GTTGCCTACGTGGATCAGATGCTGCAGACGTGTGAGCAGAGTTCTAGCTGAAACAGTGACTGGG
TTCTTGTAGCTTAGCAATGACTCACAGCTGCCCACAGTAACCTAATAAAAACCCAACTTCACCA
ACTTCATCCCAAAATGTCCCTCTGTGAATGAAAATGGGCTTTCAAGAAGCTTTTTGTGGAAACT
GGCAGTGCCCACCTATCTCAGCCTTGTCCTCTGTTGTAGGCTGAAGATTTATGAATCTCATGTT
TACACTGATCACTGGATTGCAGACATTTCTGCCCAGCACACATGGCTGCAGAGCAGCTGTGGGT
CTCCTGCTGAGAACGGCCTGGGCTCACCCTGATGCAGCTTCCCAAGCACCTTGGCCAGCGCAGC
CTGGCTACAGCACTAATCTGCACAAGACGGTGACACTGTGACACTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTCATGTGATGGAATCTAGGCCCTTGCACATC
CCAGGTCAGTGCTCTGCTACAGAGCTCCCCACCCCTCACAGCGGCCTTTCTGGTGGCTCCGTCA
CTCAGTACTGTCTGGAAGGACACTGATGGCTCCAGCTGTAAACTCTCTGTTTTACACTCAACTG
TCGTCCATTTTGGTGAACTTCTGAGGAAGATAAGGAGCTGCTGATGACAGGCCACGCTGCTCTG
GCTCAGATGGTAAAGCACGAAGGACACGGCTCTGTGGTGCTGGCTCACTGTCAGGTAGACCAAG
AAGCTTGGAGTTGGGATGTGACGGAGACAATCTGAGCGTCGGTGCTTTAGCCCCTGACCGTTCA
CACCAAAGGAGTGGCACGTAGTATAAATACTGTATTTATTAAATATCCTTACAGTTTATTTAAA
TGTATTTACAGAACTATTCCTGCATAAGTTATATTTCAGACATCGATCAGGTCATTGCCTCTGG
TAGGACAAACAATGATAGTCTCGACAGAACACGCAGCTCATTAGCACAGACTCAGATTTGCTCG
TCGTTACTATCTTTGCCACCAACTTCCTGCTAACAGTCACGTTTTGACATGGTCACTGCTCTAT
TGAGAAGTTCAATTTTGTGATAATTTACTTTTTTCAAAGAAATAGAATCCAAATTCTTGTTTCA
TATTTTGTTTTATAAGCAGATTTTTGCAAATTTTTTTAAATGTAAAACTGTGACAGTCTCCAGA
GAAACTGAGTGTTACAACTTGGCCAGAGAGAGCTGCTGTACAGTGACAAGAAGCCATGAACCTA
CTCTAAA

hide sequence

RefSeq Acc Id:

XM_008769245 ⟹ XP_008767467

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	39,699,355 - 39,731,218 (+)	NCBI

Sequence:

show sequence

GTGGAGCGGCCGTTCTTGCTTTGCTACTTAGAAGAAGTGTTTGGGAAAGCAATTCAAACTCTAT
CACGAGTGAGCGATGAACTGTGGCTAGACCCGTCTGAAAAAGGTCTTGCTCTGAGATCTGTGAA
TTCTTGTCATTCCACATATGGCTACGTCCTGTTCTCGTCTGTGTTTTTTCAACATTATCAATGG
TCCCCCTCAGCCACGATAACAGACAGTGACATACCACTGAATTTAAATTGCAAACTGGCAATAA
AGTCAATCCTGCCAATCTTTAGATGTCTGAATTACCTTGAAAGAAGCATAGAGAAGTGTACAAT
GGTCGCCAGATCGGACAGATGCAGAGTCGTCATCCAGTTCTTCGGCAGGCATGGTATTAAAAGA
ACTCACAATGTGTATTTCCAAGACTGCCAGCCCTTGAAAATTCTCTTTGAAAAGAGCTTGTGTG
CGAACATCCTGATGATTAAACCAAGACTGCTGGCTGAGGCCATTGCTCTTCTAACATCGAATCA
AGAGGAAGTCACCTTCTCCGTTACCCCAGAGAATTTCTGCCTCAAGAGCTCGAGTGGGGAATCA
CTGGATTTAACCAGCTCTGTGTACAGTGAGATGTCTTTTGGCCCGGAAGAGTTTGACTTCTTTC
AGGTTGGACTTGATACCGAGATAACCTTTTGCTTTAAAGAACTGAAGGGGATCCTCACCTTCTC
AGAAGTGATGCACGCACCCATTGCCATCTACTTTGACTTTCCTGGAAAACCAGTTGTTCTGAGT
GTGGAAGACATGCTCTTGGAGGCGAGCTTTATCCTGGCCACCTTATTGGACTATCCAAGTAGAA
CATCTTCACCACAGTCACTGCGCCTTTCCCAGGCACGAAGGTCAGACCCCACACTGTCCGGTGC
TCAGGAGGGTAAAAGCCGAGTCAGCCAGACCCCAGAGAGCATCTCTCGAGCAGCGCCCAAAAGG
CTGTTTCCCAAGGATCCTCCTGACAGCAGCTCTGCAGCAGAGACCAGGAGAGCCAGCGCCAGCC
AGGATGACATCTCCGAGGTGCCTGAGAGTGTTGTCAGTGATATGGAGGAAGGGCAAAGTCCCTC
ACCCCTCAGAAAGTTTTCCTGCATGTTCTTTGGAGCAGTATCTTGTGAACAGCAAGAGCATGCC
AACCACCCCTTGGGCAGTCTGGCAGTAGCAAGCGACAGTGAACAGGACGCGAGTGGATGAACGT
CCACGCTAAGGCTGTAATAGCCACACCGGGCGCTTGGCTCCCTGAAGGCCAAGGGGAAACTGAG
CAAACTGTCCCAGGATGCCCTGGAGACAGTGTCTCTGCTCTTGCCAGGATCACTGTGCACTAAA
ATCTGTGTCACTTGGGGGACAGAGCTGGCCGCACAAGGATGAGCCATCGGGGTTAGATGCCACT
GTTTAACCCTGCAGCCTTGGCATGTCCCCTGTGGATCCCTAAGGCAGACTTCCCTCAGCATCTG
GGTGAGGTGGAGCTTCTGTACCTGACAGCAGCCTTCCAGCTTATGTGAGACCTGACAGGCTTTG
TTCAGTGTTGTTTTTCAGAGTAGAGAAAAGGTGGTGAATAAAAGACATACAGTTAACTTCACTT
TGTGGTCATTTTATATATTACACGATTTTATTTCCTGGCCCTCAGCTGCTCTGGTTCCTGTCTG
CTATGCAGTGGGATGCAGAGAGCATGCAGTGAAGTCGGTATGAGTCACCGGCACACACAGCGGC
CGCTGAGCTCAGCCTGGAGTGGAACAAGGTAAGGGGGCAGAGGACAAATGCCTGTCCACTGCTC
CTCTCAGGTCTAGCTGCTTACATGCACAGATTAAAAACCTGGCACAAAACACACTGATGTAACT
TATTATGCTGTAGGACTCTCTCCCAAACCAGTGTACAGTGGTTGCAGGCTACAGGAGTCTTTGG
AACATCTTATTGCTAAGTCCTTGGAAACCATCAGACCGTAAGGAAATGTCAAGCAGCAGGCCAG
CCACCGTACTTCACACTCAGCGTTGCCTACGTGGATCAGATGCTGCAGACGTGTGAGCAGAGTT
CTAGCTGAAACAGTGACTGGGTTCTTGTAGCTTAGCAATGACTCACAGCTGCCCACAGTAACCT
AATAAAAACCCAACTTCACCAACTTCATCCCAAAATGTCCCTCTGTGAATGAAAATGGGCTTTC
AAGAAGCTTTTTGTGGAAACTGGCAGTGCCCACCTATCTCAGCCTTGTCCTCTGTTGTAGGCTG
AAGATTTATGAATCTCATGTTTACACTGATCACTGGATTGCAGACATTTCTGCCCAGCACACAT
GGCTGCAGAGCAGCTGTGGGTCTCCTGCTGAGAACGGCCTGGGCTCACCCTGATGCAGCTTCCC
AAGCACCTTGGCCAGCGCAGCCTGGCTACAGCACTAATCTGCACAAGACGGTGACACTGTGACA
CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTCATGTGATG
GAATCTAGGCCCTTGCACATCCCAGGTCAGTGCTCTGCTACAGAGCTCCCCACCCCTCACAGCG
GCCTTTCTGGTGGCTCCGTCACTCAGTACTGTCTGGAAGGACACTGATGGCTCCAGCTGTAAAC
TCTCTGTTTTACACTCAACTGTCGTCCATTTTGGTGAACTTCTGAGGAAGATAAGGAGCTGCTG
ATGACAGGCCACGCTGCTCTGGCTCAGATGGTAAAGCACGAAGGACACGGCTCTGTGGTGCTGG
CTCACTGTCAGGTAGACCAAGAAGCTTGGAGTTGGGATGTGACGGAGACAATCTGAGCGTCGGT
GCTTTAGCCCCTGACCGTTCACACCAAAGGAGTGGCACGTAGTATAAATACTGTATTTATTAAA
TATCCTTACAGTTTATTTAAATGTATTTACAGAACTATTCCTGCATAAGTTATATTTCAGACAT
CGATCAGGTCATTGCCTCTGGTAGGACAAACAATGATAGTCTCGACAGAACACGCAGCTCATTA
GCACAGACTCAGATTTGCTCGTCGTTACTATCTTTGCCACCAACTTCCTGCTAACAGTCACGTT
TTGACATGGTCACTGCTCTATTGAGAAGTTCAATTTTGTGATAATTTACTTTTTTCAAAGAAAT
AGAATCCAAATTCTTGTTTCATATTTTGTTTTATAAGCAGATTTTTGCAAATTTTTTTAAATGT
AAAACTGTGACAGTCTCCAGAGAAACTGAGTGTTACAACTTGGCCAGAGAGAGCTGCTGTACAG
TGACAAGAAGCCATGAACCTACTCTAAA

hide sequence

RefSeq Acc Id:

XM_017598412 ⟹ XP_017453901

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	34,217,868 - 34,248,380 (+)	NCBI
Rnor_6.0	12	39,699,076 - 39,731,218 (+)	NCBI

Sequence:

show sequence

CTTCCTCAGGCACCTCGCTGACCCGCCCACTTCTTCCGCCACCAATGAGACGACGAGTTTGCGA
GAGACTGTCCTACGGCGGCCCTGTTTGGGAAAGCAATTCAAACTCTATCACGAGTGAGCGATGA
ACTGTGGCTAGACCCGTCTGAAAAAGGTGTAACTTGCTCTGAGATCTGTGAATTCTTGTCATTC
CACATATGGCTACGTCCTGTTCTCGTCTGTGTTTTTTCAACATTATCAATGGTCCCCCTCAGCC
ACGATAACAGACAGTGACATACCACTGAATTTAAATTGCAAACTGGCAATAAAGTCAATCCTGC
CAATCTTTAGATGTCTGAATTACCTTGAAAGAAGCATAGAGAAGTGTACAATGGTCGCCAGATC
GGACAGATGCAGAGTCGTCATCCAGTTCTTCGGCAGGCATGGTATTAAAAGAACTCACAATGTG
TATTTCCAAGACTGCCAGCCCTTGAAAATTCTCTTTGAAAAGAGCTTGTGTGCGAACATCCTGA
TGATTAAACCAAGACTGCTGGCTGAGGCCATTGCTCTTCTAACATCGAATCAAGAGGAAGTCAC
CTTCTCCGTTACCCCAGAGAATTTCTGCCTCAAGAGCTCGAGTGGGGAATCACTGGATTTAACC
AGCTCTGTGTACAGTGAGATGTCTTTTGGCCCGGAAGAGTTTGACTTCTTTCAGGTTGGACTTG
ATACCGAGATAACCTTTTGCTTTAAAGAACTGAAGGGGATCCTCACCTTCTCAGAAGTGATGCA
CGCACCCATTGCCATCTACTTTGACTTTCCTGGAAAACCAGTTGTTCTGAGTGTGGAAGACATG
CTCTTGGAGGCGAGCTTTATCCTGGCCACCTTATTGGACTATCCAAGTAGAACATCTTCACCAC
AGTCACTGCGCCTTTCCCAGGCACGAAGGTCAGACCCCACACTGTCCGGTGCTCAGGAGGGTAA
AAGCCGAGTCAGCCAGACCCCAGAGAGCATCTCTCGAGCAGCGCCCAAAAGGCTGTTTCCCAAG
GATCCTCCTGACAGCAGCTCTGCAGCAGAGACCAGGAGAGCCAGCGCCAGCCAGGATGACATCT
CCGAGGTGCCTGAGAGTGTTGTCAGTGATATGGAGGAAGGGCAAAGTCCCTCACCCCTCAGAAA
GTTTTCCTGCATGTTCTTTGGAGCAGTATCTTGTGAACAGCAAGAGCATGCCAACCACCCCTTG
GGCAGTCTGGCAGTAGCAAGCGACAGTGAACAGGACGCGAGTGGATGAACGTCCACGCTAAGGC
TGTAATAGCCACACCGGGCGCTTGGCTCCCTGAAGGCCAAGGGGAAACTGAGCAAACTGTCCCA
GGATGCCCTGGAGACAGTGTCTCTGCTCTTGCCAGGATCACTGTGCACTAAAATCTGTGTCACT
TGGGGGACAGAGCTGGCCGCACAAGGATGAGCCATCGGGGTTAGATGCCACTGTTTAACCCTGC
AGCCTTGGCATGTCCCCTGTGGATCCCTAAGGCAGACTTCCCTCAGCATCTGGGTGAGGTGGAG
CTTCTGTACCTGACAGCAGCCTTCCAGCTTATGTGAGACCTGACAGGCTTTGTTCAGTGTTGTT
TTTCAGAGTAGAGAAAAGGTGGTGAATAAAAGACATACAGTTAACTTCACTTTGTGGTCATTTT
ATATATTACACGATTTTATTTCCTGGCCCTCAGCTGCTCTGGTTCCTGTCTGCTATGCAGTGGG
ATGCAGAGAGCATGCAGTGAAGTCGGTATGAGTCACCGGCACACACAGCGGCCGCTGAGCTCAG
CCTGGAGTGGAACAAGGTAAGGGGGCAGAGGACAAATGCCTGTCCACTGCTCCTCTCAGGTCTA
GCTGCTTACATGCACAGATTAAAAACCTGGCACAAAACACACTGATGTAACTTATTATGCTGTA
GGACTCTCTCCCAAACCAGTGTACAGTGGTTGCAGGCTACAGGAGTCTTTGGAACATCTTATTG
CTAAGTCCTTGGAAACCATCAGACCGTAAGGAAATGTCAAGCAGCAGGCCAGCCACCGTACTTC
ACACTCAGCGTTGCCTACGTGGATCAGATGCTGCAGACGTGTGAGCAGAGTTCTAGCTGAAACA
GTGACTGGGTTCTTGTAGCTTAGCAATGACTCACAGCTGCCCACAGTAACCTAATAAAAACCCA
ACTTCACCAACTTCATCCCAAAATGTCCCTCTGTGAATGAAAATGGGCTTTCAAGAAGCTTTTT
GTGGAAACTGGCAGTGCCCACCTATCTCAGCCTTGTCCTCTGTTGTAGGCTGAAGATTTATGAA
TCTCATGTTTACACTGATCACTGGATTGCAGACATTTCTGCCCAGCACACATGGCTGCAGAGCA
GCTGTGGGTCTCCTGCTGAGAACGGCCTGGGCTCACCCTGATGCAGCTTCCCAAGCACCTTGGC
CAGCGCAGCCTGGCTACAGCACTAATCTGCACAAGACGGTGACACTGTGACACTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTCATGTGATGGAATCTAGGCCC
TTGCACATCCCAGGTCAGTGCTCTGCTACAGAGCTCCCCACCCCTCACAGCGGCCTTTCTGGTG
GCTCCGTCACTCAGTACTGTCTGGAAGGACACTGATGGCTCCAGCTGTAAACTCTCTGTTTTAC
ACTCAACTGTCGTCCATTTTGGTGAACTTCTGAGGAAGATAAGGAGCTGCTGATGACAGGCCAC
GCTGCTCTGGCTCAGATGGTAAAGCACGAAGGACACGGCTCTGTGGTGCTGGCTCACTGTCAGG
TAGACCAAGAAGCTTGGAGTTGGGATGTGACGGAGACAATCTGAGCGTCGGTGCTTTAGCCCCT
GACCGTTCACACCAAAGGAGTGGCACGTAGTATAAATACTGTATTTATTAAATATCCTTACAGT
TTATTTAAATGTATTTACAGAACTATTCCTGCATAAGTTATATTTCAGACATCGATCAGGTCAT
TGCCTCTGGTAGGACAAACAATGATAGTCTCGACAGAACACGCAGCTCATTAGCACAGACTCAG
ATTTGCTCGTCGTTACTATCTTTGCCACCAACTTCCTGCTAACAGTCACGTTTTGACATGGTCA
CTGCTCTATTGAGAAGTTCAATTTTGTGATAATTTACTTTTTTCAAAGAAATAGAATCCAAATT
CTTGTTTCATATTTTGTTTTATAAGCAGATTTTTGCAAATTTTTTTAAATGTAAAACTGTGACA
GTCTCCAGAGAAACTGAGTGTTACAACTTGGCCAGAGAGAGCTGCTGTACAGTGACAAGAAGCC
ATGAACCTACTCTAAA

hide sequence

RefSeq Acc Id:

XM_017598413 ⟹ XP_017453902

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	34,218,063 - 34,248,380 (+)	NCBI
Rnor_6.0	12	39,699,167 - 39,731,218 (+)	NCBI

Sequence:

show sequence

GTCTTTCCCCGTCAGAGAAAAAAAAACGGTGCTGCGAGAAATTCCTCGCGGGTGGGGCAAGGTA
GAAGCGGAGCGGGCGGAAAGTGAGAGCAACATCCGGGCACCTGCGTCTGGAGCGCTTCTGCCCG
CCATGCCTCCTTTTCCCGTAGCCATGCTGAAGTGTGGGATGACGGGCGGTCAGGTGAAAGCTTG
CTCTGAGATCTGTGAATTCTTGTCATTCCACATATGGCTACGTCCTGTTCTCGTCTGTGTTTTT
TCAACATTATCAATGGTCCCCCTCAGCCACGATAACAGACAGTGACATACCACTGAATTTAAAT
TGCAAACTGGCAATAAAGTCAATCCTGCCAATCTTTAGATGTCTGAATTACCTTGAAAGAAGCA
TAGAGAAGTGTACAATGGTCGCCAGATCGGACAGATGCAGAGTCGTCATCCAGTTCTTCGGCAG
GCATGGTATTAAAAGAACTCACAATGTGTATTTCCAAGACTGCCAGCCCTTGAAAATTCTCTTT
GAAAAGAGCTTGTGTGCGAACATCCTGATGATTAAACCAAGACTGCTGGCTGAGGCCATTGCTC
TTCTAACATCGAATCAAGAGGAAGTCACCTTCTCCGTTACCCCAGAGAATTTCTGCCTCAAGAG
CTCGAGTGGGGAATCACTGGATTTAACCAGCTCTGTGTACAGTGAGATGTCTTTTGGCCCGGAA
GAGTTTGACTTCTTTCAGGTTGGACTTGATACCGAGATAACCTTTTGCTTTAAAGAACTGAAGG
GGATCCTCACCTTCTCAGAAGTGATGCACGCACCCATTGCCATCTACTTTGACTTTCCTGGAAA
ACCAGTTGTTCTGAGTGTGGAAGACATGCTCTTGGAGGCGAGCTTTATCCTGGCCACCTTATTG
GACTATCCAAGTAGAACATCTTCACCACAGTCACTGCGCCTTTCCCAGGCACGAAGGTCAGACC
CCACACTGTCCGGTGCTCAGGAGGGTAAAAGCCGAGTCAGCCAGACCCCAGAGAGCATCTCTCG
AGCAGCGCCCAAAAGGCTGTTTCCCAAGGATCCTCCTGACAGCAGCTCTGCAGCAGAGACCAGG
AGAGCCAGCGCCAGCCAGGATGACATCTCCGAGGTGCCTGAGAGTGTTGTCAGTGATATGGAGG
AAGGGCAAAGTCCCTCACCCCTCAGAAAGTTTTCCTGCATGTTCTTTGGAGCAGTATCTTGTGA
ACAGCAAGAGCATGCCAACCACCCCTTGGGCAGTCTGGCAGTAGCAAGCGACAGTGAACAGGAC
GCGAGTGGATGAACGTCCACGCTAAGGCTGTAATAGCCACACCGGGCGCTTGGCTCCCTGAAGG
CCAAGGGGAAACTGAGCAAACTGTCCCAGGATGCCCTGGAGACAGTGTCTCTGCTCTTGCCAGG
ATCACTGTGCACTAAAATCTGTGTCACTTGGGGGACAGAGCTGGCCGCACAAGGATGAGCCATC
GGGGTTAGATGCCACTGTTTAACCCTGCAGCCTTGGCATGTCCCCTGTGGATCCCTAAGGCAGA
CTTCCCTCAGCATCTGGGTGAGGTGGAGCTTCTGTACCTGACAGCAGCCTTCCAGCTTATGTGA
GACCTGACAGGCTTTGTTCAGTGTTGTTTTTCAGAGTAGAGAAAAGGTGGTGAATAAAAGACAT
ACAGTTAACTTCACTTTGTGGTCATTTTATATATTACACGATTTTATTTCCTGGCCCTCAGCTG
CTCTGGTTCCTGTCTGCTATGCAGTGGGATGCAGAGAGCATGCAGTGAAGTCGGTATGAGTCAC
CGGCACACACAGCGGCCGCTGAGCTCAGCCTGGAGTGGAACAAGGTAAGGGGGCAGAGGACAAA
TGCCTGTCCACTGCTCCTCTCAGGTCTAGCTGCTTACATGCACAGATTAAAAACCTGGCACAAA
ACACACTGATGTAACTTATTATGCTGTAGGACTCTCTCCCAAACCAGTGTACAGTGGTTGCAGG
CTACAGGAGTCTTTGGAACATCTTATTGCTAAGTCCTTGGAAACCATCAGACCGTAAGGAAATG
TCAAGCAGCAGGCCAGCCACCGTACTTCACACTCAGCGTTGCCTACGTGGATCAGATGCTGCAG
ACGTGTGAGCAGAGTTCTAGCTGAAACAGTGACTGGGTTCTTGTAGCTTAGCAATGACTCACAG
CTGCCCACAGTAACCTAATAAAAACCCAACTTCACCAACTTCATCCCAAAATGTCCCTCTGTGA
ATGAAAATGGGCTTTCAAGAAGCTTTTTGTGGAAACTGGCAGTGCCCACCTATCTCAGCCTTGT
CCTCTGTTGTAGGCTGAAGATTTATGAATCTCATGTTTACACTGATCACTGGATTGCAGACATT
TCTGCCCAGCACACATGGCTGCAGAGCAGCTGTGGGTCTCCTGCTGAGAACGGCCTGGGCTCAC
CCTGATGCAGCTTCCCAAGCACCTTGGCCAGCGCAGCCTGGCTACAGCACTAATCTGCACAAGA
CGGTGACACTGTGACACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGCTCATGTGATGGAATCTAGGCCCTTGCACATCCCAGGTCAGTGCTCTGCTACAGAGCTC
CCCACCCCTCACAGCGGCCTTTCTGGTGGCTCCGTCACTCAGTACTGTCTGGAAGGACACTGAT
GGCTCCAGCTGTAAACTCTCTGTTTTACACTCAACTGTCGTCCATTTTGGTGAACTTCTGAGGA
AGATAAGGAGCTGCTGATGACAGGCCACGCTGCTCTGGCTCAGATGGTAAAGCACGAAGGACAC
GGCTCTGTGGTGCTGGCTCACTGTCAGGTAGACCAAGAAGCTTGGAGTTGGGATGTGACGGAGA
CAATCTGAGCGTCGGTGCTTTAGCCCCTGACCGTTCACACCAAAGGAGTGGCACGTAGTATAAA
TACTGTATTTATTAAATATCCTTACAGTTTATTTAAATGTATTTACAGAACTATTCCTGCATAA
GTTATATTTCAGACATCGATCAGGTCATTGCCTCTGGTAGGACAAACAATGATAGTCTCGACAG
AACACGCAGCTCATTAGCACAGACTCAGATTTGCTCGTCGTTACTATCTTTGCCACCAACTTCC
TGCTAACAGTCACGTTTTGACATGGTCACTGCTCTATTGAGAAGTTCAATTTTGTGATAATTTA
CTTTTTTCAAAGAAATAGAATCCAAATTCTTGTTTCATATTTTGTTTTATAAGCAGATTTTTGC
AAATTTTTTTAAATGTAAAACTGTGACAGTCTCCAGAGAAACTGAGTGTTACAACTTGGCCAGA
GAGAGCTGCTGTACAGTGACAAGAAGCCATGAACCTACTCTAAA

hide sequence

RefSeq Acc Id:

XM_039089633 ⟹ XP_038945561

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	34,217,985 - 34,248,380 (+)	NCBI

RefSeq Acc Id:

XM_039089634 ⟹ XP_038945562

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	34,218,030 - 34,248,380 (+)	NCBI

RefSeq Acc Id:

XM_039089635 ⟹ XP_038945563

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	34,218,086 - 34,248,380 (+)	NCBI

RefSeq Acc Id:

XM_039089637 ⟹ XP_038945565

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	34,218,030 - 34,248,380 (+)	NCBI

RefSeq Acc Id:

XM_039089638 ⟹ XP_038945566

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	34,227,090 - 34,248,380 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001025213	(Get FASTA)	NCBI Sequence Viewer
	XP_008767463	(Get FASTA)	NCBI Sequence Viewer
	XP_008767464	(Get FASTA)	NCBI Sequence Viewer
	XP_008767465	(Get FASTA)	NCBI Sequence Viewer
	XP_008767466	(Get FASTA)	NCBI Sequence Viewer
	XP_017453901	(Get FASTA)	NCBI Sequence Viewer
	XP_017453902	(Get FASTA)	NCBI Sequence Viewer
	XP_038945561	(Get FASTA)	NCBI Sequence Viewer
	XP_038945562	(Get FASTA)	NCBI Sequence Viewer
	XP_038945563	(Get FASTA)	NCBI Sequence Viewer
	XP_038945565	(Get FASTA)	NCBI Sequence Viewer
	XP_038945566	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH99750	(Get FASTA)	NCBI Sequence Viewer
	EDM13694	(Get FASTA)	NCBI Sequence Viewer
	EDM13695	(Get FASTA)	NCBI Sequence Viewer
	Q499V3	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001025213 ⟸ NM_001030042

- Sequence:

show sequence

MTGGQVKVFGKAIQTLSRVSDELWLDPSEKGLALRSVNSCHSTYGYVLFSSVFFQHYQWSPSAT
ITDSDIPLNLNCKLAIKSILPIFRCLNYLERSIEKCTMVARSDRCRVVIQFFGRHGIKRTHNVY
FQDCQPLKILFEKSLCANILMIKPRLLAEAIALLTSNQEEVTFSVTPENFCLKSSSGESLDLTS
SVYSEMSFGPEEFDFFQVGLDTEITFCFKELKGILTFSEVMHAPIAIYFDFPGKPVVLSVEDML
LEASFILATLLDYPSRTSSPQSLRLSQARRSDPTLSGAQEGKSRVSQTPESISRAAPKRLFPKD
PPDSSSAAETRRASASQDDISEVPESVVSDMEEGQSPSPLRKFSCMFFGAVSCEQQEHANHPLG
SLAVASDSEQDASG

hide sequence

RefSeq Acc Id:

XP_006249428 ⟸ XM_006249366

- Peptide Label:

isoform X1

- Sequence:

show sequence

MYVVFGKAIQTLSRVSDELWLDPSEKGLALRSVNSCHSTYGYVLFSSVFFQHYQWSPSATITDS
DIPLNLNCKLAIKSILPIFRCLNYLERSIEKCTMVARSDRCRVVIQFFGRHGIKRTHNVYFQDC
QPLKILFEKSLCANILMIKPRLLAEAIALLTSNQEEVTFSVTPENFCLKSSSGESLDLTSSVYS
EMSFGPEEFDFFQVGLDTEITFCFKELKGILTFSEVMHAPIAIYFDFPGKPVVLSVEDMLLEAS
FILATLLDYPSRTSSPQSLRLSQARRSDPTLSGAQEGKSRVSQTPESISRAAPKRLFPKDPPDS
SSAAETRRASASQDDISEVPESVVSDMEEGQSPSPLRKFSCMFFGAVSCEQQEHANHPLGSLAV
ASDSEQDASG

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RefSeq Acc Id:

XP_008767464 ⟸ XM_008769242

- Peptide Label:

isoform X2

- Sequence:

show sequence

MVARSDRCRVVIQFFGRHGIKRTHNVYFQDCQPLKILFEKSLCANILMIKPRLLAEAIALLTSN
QEEVTFSVTPENFCLKSSSGESLDLTSSVYSEMSFGPEEFDFFQVGLDTEITFCFKELKGILTF
SEVMHAPIAIYFDFPGKPVVLSVEDMLLEASFILATLLDYPSRTSSPQSLRLSQARRSDPTLSG
AQEGKSRVSQTPESISRAAPKRLFPKDPPDSSSAAETRRASASQDDISEVPESVVSDMEEGQSP
SPLRKFSCMFFGAVSCEQQEHANHPLGSLAVASDSEQDASG

hide sequence

RefSeq Acc Id:

XP_008767463 ⟸ XM_008769241

- Peptide Label:

isoform X1

- Sequence:

show sequence

MPPFPVAMLKCGMTGGQVKVFGKAIQTLSRVSDELWLDPSEKGLALRSVNSCHSTYGYVLFSSV
FFQHYQWSPSATITDSDIPLNLNCKLAIKSILPIFRCLNYLERSIEKCTMVARSDRCRVVIQFF
GRHGIKRTHNVYFQDCQPLKILFEKSLCANILMIKPRLLAEAIALLTSNQEEVTFSVTPENFCL
KSSSGESLDLTSSVYSEMSFGPEEFDFFQVGLDTEITFCFKELKGILTFSEVMHAPIAIYFDFP
GKSDPTLSGAQEGKSRVSQTPESISRAAPKRLFPKDPPDSSSAAETRRASASQDDISEVPESVV
SDMEEGQSPSPLRKFSCMFFGAVSCEQQEHANHPLGSLAVASDSEQDASG

hide sequence

RefSeq Acc Id:

XP_008767466 ⟸ XM_008769244

- Peptide Label:

isoform X2

- Sequence:

show sequence

MVARSDRCRVVIQFFGRHGIKRTHNVYFQDCQPLKILFEKSLCANILMIKPRLLAEAIALLTSN
QEEVTFSVTPENFCLKSSSGESLDLTSSVYSEMSFGPEEFDFFQVGLDTEITFCFKELKGILTF
SEVMHAPIAIYFDFPGKPVVLSVEDMLLEASFILATLLDYPSRTSSPQSLRLSQARRSDPTLSG
AQEGKSRVSQTPESISRAAPKRLFPKDPPDSSSAAETRRASASQDDISEVPESVVSDMEEGQSP
SPLRKFSCMFFGAVSCEQQEHANHPLGSLAVASDSEQDASG

hide sequence

RefSeq Acc Id:

XP_008767467 ⟸ XM_008769245

- Peptide Label:

isoform X3

- Sequence:

show sequence

MVARSDRCRVVIQFFGRHGIKRTHNVYFQDCQPLKILFEKSLCANILMIKPRLLAEAIALLTSN
QEEVTFSVTPENFCLKSSSGESLDLTSSVYSEMSFGPEEFDFFQVGLDTEITFCFKELKGILTF
SEVMHAPIAIYFDFPGKPVVLSVEDMLLEASFILATLLDYPSRTSSPQSLRLSQARRSDPTLSG
AQEGKSRVSQTPESISRAAPKRLFPKDPPDSSSAAETRRASASQDDISEVPESVVSDMEEGQSP
SPLRKFSCMFFGAVSCEQQEHANHPLGSLAVASDSEQDASG

hide sequence

RefSeq Acc Id:

XP_008767465 ⟸ XM_008769243

- Peptide Label:

isoform X2

- Sequence:

show sequence

MVARSDRCRVVIQFFGRHGIKRTHNVYFQDCQPLKILFEKSLCANILMIKPRLLAEAIALLTSN
QEEVTFSVTPENFCLKSSSGESLDLTSSVYSEMSFGPEEFDFFQVGLDTEITFCFKELKGILTF
SEVMHAPIAIYFDFPGKPVVLSVEDMLLEASFILATLLDYPSRTSSPQSLRLSQARRSDPTLSG
AQEGKSRVSQTPESISRAAPKRLFPKDPPDSSSAAETRRASASQDDISEVPESVVSDMEEGQSP
SPLRKFSCMFFGAVSCEQQEHANHPLGSLAVASDSEQDASG

hide sequence

RefSeq Acc Id:

XP_017453901 ⟸ XM_017598412

- Peptide Label:

isoform X2

- Sequence:

show sequence

MVARSDRCRVVIQFFGRHGIKRTHNVYFQDCQPLKILFEKSLCANILMIKPRLLAEAIALLTSN
QEEVTFSVTPENFCLKSSSGESLDLTSSVYSEMSFGPEEFDFFQVGLDTEITFCFKELKGILTF
SEVMHAPIAIYFDFPGKPVVLSVEDMLLEASFILATLLDYPSRTSSPQSLRLSQARRSDPTLSG
AQEGKSRVSQTPESISRAAPKRLFPKDPPDSSSAAETRRASASQDDISEVPESVVSDMEEGQSP
SPLRKFSCMFFGAVSCEQQEHANHPLGSLAVASDSEQDASG

hide sequence

RefSeq Acc Id:

XP_017453902 ⟸ XM_017598413

- Peptide Label:

isoform X2

- Sequence:

show sequence

MVARSDRCRVVIQFFGRHGIKRTHNVYFQDCQPLKILFEKSLCANILMIKPRLLAEAIALLTSN
QEEVTFSVTPENFCLKSSSGESLDLTSSVYSEMSFGPEEFDFFQVGLDTEITFCFKELKGILTF
SEVMHAPIAIYFDFPGKPVVLSVEDMLLEASFILATLLDYPSRTSSPQSLRLSQARRSDPTLSG
AQEGKSRVSQTPESISRAAPKRLFPKDPPDSSSAAETRRASASQDDISEVPESVVSDMEEGQSP
SPLRKFSCMFFGAVSCEQQEHANHPLGSLAVASDSEQDASG

hide sequence

RefSeq Acc Id:

ENSRNOP00000042520 ⟸ ENSRNOT00000048454

RefSeq Acc Id:	XP_038945561 ⟸ XM_039089633
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038945565 ⟸ XM_039089637
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038945562 ⟸ XM_039089634
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038945563 ⟸ XM_039089635
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038945566 ⟸ XM_039089638
- Peptide Label:	isoform X5

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698648

Promoter ID:

EPDNEW_R9173

Type:

initiation region

Name:

Rad9b_1

Description:

RAD9 checkpoint clamp component B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	39,699,304 - 39,699,364	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
12	41610058	41610059	T	G	snv	LE/OrlBarth (UDEL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308223	AgrOrtholog
Ensembl Genes	ENSRNOG00000021480	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000042520	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000048454	ENTREZGENE, UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:5599441	IMAGE-MGC_LOAD
InterPro	Rad9	UniProtKB/Swiss-Prot
	Rad9/Ddc1	UniProtKB/Swiss-Prot
KEGG Report	rno:363924	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124758	IMAGE-MGC_LOAD
NCBI Gene	363924	ENTREZGENE
PANTHER	PTHR15237	UniProtKB/Swiss-Prot
Pfam	Rad9	UniProtKB/Swiss-Prot
PhenoGen	Rad9b	PhenoGen
PIRSF	Cell_cycle_RAD9	UniProtKB/Swiss-Prot
UniProt	Q499V3	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-07-01	Rad9b	RAD9 checkpoint clamp component B	Rad9b	RAD9 homolog B (S. pombe)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-08-01	Rad9b	RAD9 homolog B (S. pombe)	Rad9b	RAD9 homolog B (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Rad9b	RAD9 homolog B (S. cerevisiae)	Rad9b_predicted	RAD9 homolog B (S. cerevisiae) (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Rad9b_predicted	RAD9 homolog B (S. cerevisiae) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar