Mmp17 (matrix metallopeptidase 17) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Mmp17 (matrix metallopeptidase 17) Rattus norvegicus
Analyze
Symbol: Mmp17
Name: matrix metallopeptidase 17
RGD ID: 1311541
Description: Predicted to enable metalloendopeptidase activity. Predicted to be involved in collagen catabolic process and extracellular matrix organization. Predicted to act upstream of or within drinking behavior and kidney development. Predicted to be located in extracellular matrix. Orthologous to human MMP17 (matrix metallopeptidase 17); INTERACTS WITH 17alpha-ethynylestradiol; 3,3',5,5'-tetrabromobisphenol A; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC288626; matrix metalloproteinase 17; matrix metalloproteinase-17
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21227,074,398 - 27,099,317 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1227,074,409 - 27,099,316 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1228,210,833 - 28,235,729 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01228,821,391 - 28,846,290 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01227,882,871 - 27,907,767 (-)NCBIRnor_WKY
Rnor_6.01230,701,900 - 30,728,683 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01230,353,874 - 30,356,526 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1230,702,571 - 30,728,655 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01232,636,484 - 32,663,678 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41228,142,947 - 28,168,483 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11228,007,827 - 28,031,804 (-)NCBI
Celera1228,778,275 - 28,803,185 (-)NCBICelera
Cytogenetic Map12q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15057822   PMID:25348153  


Genomics

Comparative Map Data
Mmp17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21227,074,398 - 27,099,317 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1227,074,409 - 27,099,316 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1228,210,833 - 28,235,729 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01228,821,391 - 28,846,290 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01227,882,871 - 27,907,767 (-)NCBIRnor_WKY
Rnor_6.01230,701,900 - 30,728,683 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01230,353,874 - 30,356,526 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1230,702,571 - 30,728,655 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01232,636,484 - 32,663,678 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41228,142,947 - 28,168,483 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11228,007,827 - 28,031,804 (-)NCBI
Celera1228,778,275 - 28,803,185 (-)NCBICelera
Cytogenetic Map12q13NCBI
MMP17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812131,828,393 - 131,851,771 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl12131,828,393 - 131,851,783 (+)EnsemblGRCh38hg38GRCh38
GRCh3712132,312,938 - 132,336,316 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612130,878,894 - 130,902,272 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412130,979,170 - 131,002,546NCBI
Celera12131,939,471 - 131,953,072 (+)NCBICelera
Cytogenetic Map12q24.33NCBI
HuRef12129,198,895 - 129,222,033 (+)NCBIHuRef
CHM1_112132,133,920 - 132,157,125 (+)NCBICHM1_1
T2T-CHM13v2.012131,872,417 - 131,895,761 (+)NCBIT2T-CHM13v2.0
Mmp17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395129,661,215 - 129,688,163 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5129,661,233 - 129,688,163 (+)EnsemblGRCm39 Ensembl
GRCm385129,584,151 - 129,611,099 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5129,584,169 - 129,611,099 (+)EnsemblGRCm38mm10GRCm38
MGSCv375130,090,089 - 130,114,086 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365129,898,922 - 129,922,919 (+)NCBIMGSCv36mm8
Celera5126,627,110 - 126,651,274 (+)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map568.18NCBI
Mmp17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955482789,968 - 797,301 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955482788,921 - 797,301 (-)NCBIChiLan1.0ChiLan1.0
MMP17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112133,922,882 - 133,936,152 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12133,922,882 - 133,936,152 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012129,481,501 - 129,505,696 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
MMP17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1261,008,651 - 1,019,131 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl261,009,109 - 1,018,662 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha261,054,484 - 1,073,216 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0261,072,479 - 1,091,195 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl261,072,934 - 1,091,431 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1261,009,626 - 1,028,354 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0261,106,771 - 1,124,956 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0261,029,400 - 1,048,084 (-)NCBIUU_Cfam_GSD_1.0
Mmp17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118122,568,921 - 122,590,193 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366602,139,129 - 2,150,741 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049366602,139,777 - 2,152,159 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MMP17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1423,481,227 - 23,506,919 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11423,481,220 - 23,506,936 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21424,946,584 - 24,972,449 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MMP17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111127,204,811 - 127,229,202 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11127,214,890 - 127,230,731 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037117,730,300 - 117,813,072 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mmp17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474727,659,060 - 27,670,447 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474727,658,997 - 27,671,377 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mmp17
69 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:395
Count of miRNA genes:215
Interacting mature miRNAs:259
Transcripts:ENSRNOT00000035881
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382528064557Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121363552330827399Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961088935682913Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121983578938193007Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122413920236638073Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)122423477731894213Rat

Markers in Region
RH130381  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21227,074,463 - 27,074,659 (+)MAPPERmRatBN7.2
Rnor_6.01230,701,966 - 30,702,161NCBIRnor6.0
Rnor_6.01230,353,929 - 30,354,124NCBIRnor6.0
Rnor_5.01232,297,126 - 32,297,321UniSTSRnor5.0
Rnor_5.01232,636,962 - 32,637,157UniSTSRnor5.0
RGSC_v3.41228,143,002 - 28,143,197UniSTSRGSC3.4
Celera1228,778,330 - 28,778,525UniSTS
Cytogenetic Map12q13UniSTS
RH142497  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21227,076,703 - 27,076,812 (+)MAPPERmRatBN7.2
Rnor_6.01230,704,206 - 30,704,314NCBIRnor6.0
Rnor_6.01230,356,169 - 30,356,277NCBIRnor6.0
Rnor_5.01232,639,202 - 32,639,310UniSTSRnor5.0
Rnor_5.01232,299,366 - 32,299,474UniSTSRnor5.0
RGSC_v3.41228,145,242 - 28,145,350UniSTSRGSC3.4
Celera1228,780,570 - 28,780,678UniSTS
RH 3.4 Map12454.3UniSTS
Cytogenetic Map12q13UniSTS
Mmp17  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21227,088,364 - 27,088,459 (+)MAPPERmRatBN7.2
Rnor_6.01230,717,732 - 30,717,826NCBIRnor6.0
Rnor_5.01232,652,728 - 32,652,822UniSTSRnor5.0
RGSC_v3.41228,157,532 - 28,157,626UniSTSRGSC3.4
Celera1228,792,234 - 28,792,328UniSTS
Cytogenetic Map12q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 56 5
Low 3 43 57 41 19 41 7 10 18 35 36 11 7
Below cutoff 1 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000035881   ⟹   ENSRNOP00000037549
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1227,074,409 - 27,099,316 (-)Ensembl
Rnor_6.0 Ensembl1230,702,571 - 30,728,655 (-)Ensembl
RefSeq Acc Id: NM_001105925   ⟹   NP_001099395
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21227,074,409 - 27,099,316 (-)NCBI
Rnor_6.01230,353,874 - 30,356,526 (-)NCBI
Rnor_5.01232,636,484 - 32,663,678 (-)NCBI
RGSC_v3.41228,142,947 - 28,168,483 (-)RGD
Celera1228,778,275 - 28,803,185 (-)RGD
Sequence:
RefSeq Acc Id: XM_017598508   ⟹   XP_017453997
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21227,074,398 - 27,099,315 (-)NCBI
Rnor_6.01230,701,900 - 30,728,683 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598510   ⟹   XP_017453999
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21227,074,398 - 27,098,954 (-)NCBI
Rnor_6.01230,701,900 - 30,728,393 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039089224   ⟹   XP_038945152
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21227,074,398 - 27,095,801 (-)NCBI
RefSeq Acc Id: XM_039089225   ⟹   XP_038945153
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21227,074,398 - 27,088,984 (-)NCBI
RefSeq Acc Id: XR_005491617
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21227,076,182 - 27,099,317 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001099395   ⟸   NM_001105925
- Peptide Label: precursor
- UniProtKB: D3ZXJ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453997   ⟸   XM_017598508
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017453999   ⟸   XM_017598510
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000037549   ⟸   ENSRNOT00000035881
RefSeq Acc Id: XP_038945152   ⟸   XM_039089224
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038945153   ⟸   XM_039089225
- Peptide Label: isoform X3
Protein Domains
ZnMc

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZXJ0-F1-model_v2 AlphaFold D3ZXJ0 1-587 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698591
Promoter ID:EPDNEW_R9116
Type:initiation region
Name:Mmp17_1
Description:matrix metallopeptidase 17
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01230,728,633 - 30,728,693EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311541 AgrOrtholog
BioCyc Gene G2FUF-19487 BioCyc
Ensembl Genes ENSRNOG00000023643 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000037549 ENTREZGENE
  ENSRNOP00000037549.4 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000035881 ENTREZGENE
  ENSRNOT00000035881.6 UniProtKB/TrEMBL
Gene3D-CATH 2.110.10.10 UniProtKB/TrEMBL
  3.40.390.10 UniProtKB/TrEMBL
InterPro Hemopexin-like_dom_sf UniProtKB/TrEMBL
  Hemopexin/matrixin UniProtKB/TrEMBL
  Hemopexin/matrixin_repeat UniProtKB/TrEMBL
  M10A_MMP UniProtKB/TrEMBL
  MetalloPept_cat_dom UniProtKB/TrEMBL
  MMP17 UniProtKB/TrEMBL
  Pept_M10_metallopeptidase UniProtKB/TrEMBL
  Pept_M10A_matrixin UniProtKB/TrEMBL
  Peptidase_Metallo UniProtKB/TrEMBL
  Peptidoglycan-bd-like UniProtKB/TrEMBL
  PGBD-like_sf UniProtKB/TrEMBL
KEGG Report rno:288626 UniProtKB/TrEMBL
NCBI Gene 288626 ENTREZGENE
PANTHER PTHR10201:SF21 UniProtKB/TrEMBL
Pfam Hemopexin UniProtKB/TrEMBL
  Peptidase_M10 UniProtKB/TrEMBL
  PG_binding_1 UniProtKB/TrEMBL
PhenoGen Mmp17 PhenoGen
PIRSF Peptidase_M10A_matrix UniProtKB/TrEMBL
PRINTS MATRIXIN UniProtKB/TrEMBL
PROSITE HEMOPEXIN_2 UniProtKB/TrEMBL
SMART SM00120 UniProtKB/TrEMBL
  ZnMc UniProtKB/TrEMBL
Superfamily-SCOP Hemopexin UniProtKB/TrEMBL
  PGBD_like UniProtKB/TrEMBL
UniProt D3ZXJ0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Mmp17  matrix metallopeptidase 17   Mmp17_predicted  matrix metallopeptidase 17 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Mmp17_predicted  matrix metallopeptidase 17 (predicted)    matrix metalloproteinase 17 (predicted)  Name updated 1299863 APPROVED
2005-01-12 Mmp17_predicted  matrix metalloproteinase 17 (predicted)      Symbol and Name status set to approved 70820 APPROVED