Caln1 (calneuron 1) - Rat Genome Database

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Gene: Caln1 (calneuron 1) Rattus norvegicus
Analyze
Symbol: Caln1
Name: calneuron 1
RGD ID: 1305843
Description: Predicted to enable calcium ion binding activity. Predicted to be located in perinuclear region of cytoplasm and plasma membrane. Predicted to be active in trans-Golgi network membrane. Orthologous to human CALN1 (calneuron 1); INTERACTS WITH 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: caBP8; calcium-binding protein 8; calneuron I; calneuron-1; calneuron-I; LOC363909
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81231,447,964 - 31,939,847 (-)NCBIGRCr8
mRatBN7.21225,811,743 - 26,303,670 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1225,819,628 - 26,303,344 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1226,965,639 - 27,399,677 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01227,576,121 - 28,010,201 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01226,636,702 - 27,071,428 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01229,307,117 - 29,796,996 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1229,308,341 - 29,743,705 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01231,251,402 - 31,733,594 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41226,860,409 - 27,287,503 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11226,723,371 - 27,193,845 (-)NCBI
Celera1227,542,062 - 27,969,078 (-)NCBICelera
Cytogenetic Map12q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:17055077   PMID:19338761   PMID:19458041   PMID:19682431   PMID:22688515   PMID:26116628  


Genomics

Comparative Map Data
Caln1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81231,447,964 - 31,939,847 (-)NCBIGRCr8
mRatBN7.21225,811,743 - 26,303,670 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1225,819,628 - 26,303,344 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1226,965,639 - 27,399,677 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01227,576,121 - 28,010,201 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01226,636,702 - 27,071,428 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01229,307,117 - 29,796,996 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1229,308,341 - 29,743,705 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01231,251,402 - 31,733,594 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41226,860,409 - 27,287,503 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11226,723,371 - 27,193,845 (-)NCBI
Celera1227,542,062 - 27,969,078 (-)NCBICelera
Cytogenetic Map12q12NCBI
CALN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38771,779,491 - 72,504,279 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl771,779,491 - 72,447,151 (-)EnsemblGRCh38hg38GRCh38
GRCh37771,244,476 - 71,912,128 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36770,882,412 - 71,515,296 (-)NCBINCBI36Build 36hg18NCBI36
Build 34770,692,565 - 71,356,697NCBI
Celera764,619,023 - 65,251,883 (-)NCBICelera
Cytogenetic Map7q11.22NCBI
HuRef767,413,680 - 68,045,799 (-)NCBIHuRef
CHM1_1771,338,794 - 71,972,776 (-)NCBICHM1_1
T2T-CHM13v2.0772,996,291 - 73,722,754 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2770,577,428 - 71,210,210 (-)NCBI
Caln1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395130,398,245 - 130,876,253 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5130,398,296 - 130,876,253 (+)EnsemblGRCm39 Ensembl
GRCm385130,369,404 - 130,846,325 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5130,369,455 - 130,847,412 (+)EnsemblGRCm38mm10GRCm38
MGSCv375130,845,328 - 131,316,515 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365130,733,504 - 131,124,904 (+)NCBIMGSCv36mm8
Celera5127,382,573 - 127,853,118 (+)NCBICelera
Cytogenetic Map5G1.3- G2NCBI
cM Map569.29NCBI
Caln1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554569,079,917 - 9,543,754 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554569,079,917 - 9,547,459 (+)NCBIChiLan1.0ChiLan1.0
CALN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2692,121,039 - 92,783,896 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17140,385,673 - 141,048,531 (+)NCBINHGRI_mPanPan1
PanPan1.1779,659,066 - 80,324,368 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl779,667,347 - 80,280,077 (-)Ensemblpanpan1.1panPan2
CALN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.161,545,151 - 2,067,927 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl61,556,003 - 2,067,352 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha63,244,577 - 3,773,112 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.061,356,619 - 1,878,362 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl61,367,490 - 1,878,353 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.161,285,832 - 1,814,587 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.061,293,382 - 1,820,418 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.061,465,357 - 1,994,422 (+)NCBIUU_Cfam_GSD_1.0
Caln1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344126,873,811 - 127,223,088 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365436,820,362 - 7,135,207 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365436,813,479 - 7,054,644 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1282,846,868 - 3,578,564 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607013,019,544 - 13,761,534 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Caln1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247409,088,443 - 9,581,642 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247409,049,512 - 9,589,028 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Caln1
4884 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:89
Count of miRNA genes:76
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000001185
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382528064557Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121363552330827399Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961088935682913Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121983578938193007Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122413920236638073Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)122423477731894213Rat

Markers in Region
D12Got67  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,062,355 - 26,062,598 (+)MAPPERmRatBN7.2
Rnor_6.01229,551,323 - 29,551,563NCBIRnor6.0
Rnor_5.01231,492,686 - 31,492,926UniSTSRnor5.0
RGSC_v3.41227,096,977 - 27,097,218RGDRGSC3.4
RGSC_v3.41227,096,978 - 27,097,218UniSTSRGSC3.4
RGSC_v3.11226,960,194 - 26,960,434RGD
Celera1227,779,143 - 27,779,370UniSTS
RH 3.4 Map12447.2UniSTS
RH 3.4 Map12447.2RGD
RH 2.0 Map12315.7RGD
Cytogenetic Map12q13UniSTS
D12Got104  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,862,107 - 25,862,303 (+)MAPPERmRatBN7.2
Rnor_6.01229,350,530 - 29,350,725NCBIRnor6.0
Rnor_5.01231,294,754 - 31,294,949UniSTSRnor5.0
RGSC_v3.41226,902,909 - 26,903,105RGDRGSC3.4
RGSC_v3.41226,902,910 - 26,903,105UniSTSRGSC3.4
RGSC_v3.11226,766,126 - 26,766,321RGD
Celera1227,583,362 - 27,583,557UniSTS
RH 3.4 Map12408.8RGD
RH 3.4 Map12408.8UniSTS
RH 2.0 Map12320.0RGD
Cytogenetic Map12q13UniSTS
D12Got59  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,142,576 - 26,142,765 (+)MAPPERmRatBN7.2
Rnor_6.01229,631,815 - 29,632,001NCBIRnor6.0
Rnor_5.01231,570,525 - 31,570,711UniSTSRnor5.0
RGSC_v3.41227,176,103 - 27,176,290RGDRGSC3.4
RGSC_v3.41227,176,104 - 27,176,290UniSTSRGSC3.4
RGSC_v3.11227,039,320 - 27,039,506RGD
Celera1227,858,597 - 27,858,783UniSTS
RH 3.4 Map12436.6UniSTS
RH 3.4 Map12436.6RGD
Cytogenetic Map12q13UniSTS
C85851  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,819,345 - 25,819,451 (+)MAPPERmRatBN7.2
Rnor_6.01229,307,911 - 29,308,016NCBIRnor6.0
Rnor_5.01231,252,261 - 31,252,366UniSTSRnor5.0
RGSC_v3.41226,859,979 - 26,860,084UniSTSRGSC3.4
Celera1227,541,632 - 27,541,737UniSTS
Cytogenetic Map12q13UniSTS
BE119354  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,906,020 - 25,906,190 (+)MAPPERmRatBN7.2
Rnor_6.01229,394,762 - 29,394,931NCBIRnor6.0
Rnor_5.01231,338,278 - 31,338,447UniSTSRnor5.0
RGSC_v3.41226,940,060 - 26,940,229UniSTSRGSC3.4
Celera1227,624,040 - 27,624,209UniSTS
RH 3.4 Map12413.6UniSTS
Cytogenetic Map12q13UniSTS
BE097726  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,988,703 - 25,988,906 (+)MAPPERmRatBN7.2
Rnor_6.01229,477,770 - 29,477,972NCBIRnor6.0
Rnor_5.01231,419,231 - 31,419,433UniSTSRnor5.0
RGSC_v3.41227,023,490 - 27,023,692UniSTSRGSC3.4
Celera1227,705,597 - 27,705,799UniSTS
RH 3.4 Map12439.6UniSTS
Cytogenetic Map12q13UniSTS
AU049064  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,062,350 - 26,062,537 (+)MAPPERmRatBN7.2
Rnor_6.01229,551,318 - 29,551,502NCBIRnor6.0
Rnor_5.01231,492,681 - 31,492,865UniSTSRnor5.0
RGSC_v3.41227,096,973 - 27,097,157UniSTSRGSC3.4
Celera1227,779,138 - 27,779,309UniSTS
Cytogenetic Map12q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 48 15 1
Low 5 5 5 1 1 26 20 36 9 1
Below cutoff 8 24 18 10 18 7 7 2 2 7

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001077201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC091379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ914829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ914830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000001185   ⟹   ENSRNOP00000001185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1225,819,628 - 26,303,344 (-)Ensembl
Rnor_6.0 Ensembl1229,308,341 - 29,743,705 (-)Ensembl
RefSeq Acc Id: NM_001077201   ⟹   NP_001070669
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81231,447,964 - 31,939,498 (-)NCBI
mRatBN7.21225,811,743 - 26,303,321 (-)NCBI
Rnor_6.01229,308,341 - 29,743,705 (-)NCBI
Rnor_5.01231,251,402 - 31,733,594 (-)NCBI
RGSC_v3.41226,860,409 - 27,287,503 (-)RGD
Celera1227,542,062 - 27,969,078 (-)RGD
Sequence:
RefSeq Acc Id: XM_006249243   ⟹   XP_006249305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81231,447,966 - 31,855,335 (-)NCBI
mRatBN7.21225,811,743 - 26,219,141 (-)NCBI
Rnor_6.01229,307,117 - 29,708,656 (-)NCBI
Rnor_5.01231,251,402 - 31,733,594 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598405   ⟹   XP_017453894
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81231,447,966 - 31,939,847 (-)NCBI
mRatBN7.21225,811,743 - 26,303,670 (-)NCBI
Rnor_6.01229,307,117 - 29,796,996 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598406   ⟹   XP_017453895
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81231,447,966 - 31,939,847 (-)NCBI
mRatBN7.21225,811,743 - 26,303,670 (-)NCBI
Rnor_6.01229,307,117 - 29,796,996 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598407   ⟹   XP_017453896
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81231,447,966 - 31,924,645 (-)NCBI
mRatBN7.21225,811,743 - 26,288,085 (-)NCBI
Rnor_6.01229,307,117 - 29,781,487 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039089627   ⟹   XP_038945555
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81231,447,966 - 31,939,847 (-)NCBI
mRatBN7.21225,811,743 - 26,303,670 (-)NCBI
RefSeq Acc Id: XM_039089628   ⟹   XP_038945556
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81231,447,966 - 31,924,649 (-)NCBI
mRatBN7.21225,811,743 - 26,288,094 (-)NCBI
RefSeq Acc Id: XM_039089631   ⟹   XP_038945559
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81231,447,966 - 31,889,617 (-)NCBI
mRatBN7.21225,811,743 - 26,253,414 (-)NCBI
RefSeq Acc Id: XM_063271555   ⟹   XP_063127625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81231,447,966 - 31,939,847 (-)NCBI
RefSeq Acc Id: XM_063271556   ⟹   XP_063127626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81231,447,966 - 31,939,847 (-)NCBI
RefSeq Acc Id: XM_063271557   ⟹   XP_063127627
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81231,447,966 - 31,939,847 (-)NCBI
RefSeq Acc Id: XM_063271558   ⟹   XP_063127628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81231,447,966 - 31,939,847 (-)NCBI
RefSeq Acc Id: XM_063271559   ⟹   XP_063127629
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81231,447,966 - 31,939,847 (-)NCBI
RefSeq Acc Id: XM_063271560   ⟹   XP_063127630
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81231,774,165 - 31,939,847 (-)NCBI
RefSeq Acc Id: NP_001070669   ⟸   NM_001077201
- UniProtKB: Q06BI3 (UniProtKB/Swiss-Prot),   Q06BI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249305   ⟸   XM_006249243
- Peptide Label: isoform X3
- UniProtKB: A6J0L8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453894   ⟸   XM_017598405
- Peptide Label: isoform X1
- UniProtKB: A6J0L7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453895   ⟸   XM_017598406
- Peptide Label: isoform X1
- UniProtKB: A6J0L7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453896   ⟸   XM_017598407
- Peptide Label: isoform X1
- UniProtKB: A6J0L7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000001185   ⟸   ENSRNOT00000001185
RefSeq Acc Id: XP_038945555   ⟸   XM_039089627
- Peptide Label: isoform X1
- UniProtKB: A6J0L7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945556   ⟸   XM_039089628
- Peptide Label: isoform X2
- UniProtKB: Q06BI3 (UniProtKB/Swiss-Prot),   Q06BI2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038945559   ⟸   XM_039089631
- Peptide Label: isoform X3
- UniProtKB: A6J0L8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127626   ⟸   XM_063271556
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063127625   ⟸   XM_063271555
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063127629   ⟸   XM_063271559
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063127628   ⟸   XM_063271558
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063127627   ⟸   XM_063271557
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063127630   ⟸   XM_063271560
- Peptide Label: isoform X4
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q06BI3-F1-model_v2 AlphaFold Q06BI3 1-261 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305843 AgrOrtholog
BioCyc Gene G2FUF-19534 BioCyc
Ensembl Genes ENSRNOG00000000886 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055000216 UniProtKB/Swiss-Prot
  ENSRNOG00060010416 UniProtKB/Swiss-Prot
  ENSRNOG00065001501 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000001185 ENTREZGENE
  ENSRNOT00000001185.5 UniProtKB/Swiss-Prot
  ENSRNOT00055000363 UniProtKB/Swiss-Prot
  ENSRNOT00060017610 UniProtKB/Swiss-Prot
  ENSRNOT00065002013 UniProtKB/Swiss-Prot
Gene3D-CATH EF-hand UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S100/CaBP-9k_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:363909 UniProtKB/Swiss-Prot
NCBI Gene 363909 ENTREZGENE
PANTHER CALCIUM-BINDING PROTEIN 8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CALCIUM-BINDING PROTEIN 8-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Caln1 PhenoGen
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S100_CABP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000886 RatGTEx
  ENSRNOG00055000216 RatGTEx
  ENSRNOG00060010416 RatGTEx
  ENSRNOG00065001501 RatGTEx
SMART EFh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP EF-hand UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A6J0L7 ENTREZGENE, UniProtKB/TrEMBL
  A6J0L8 ENTREZGENE, UniProtKB/TrEMBL
  CABP8_RAT UniProtKB/Swiss-Prot
  Q06BI2 ENTREZGENE
  Q06BI3 ENTREZGENE
UniProt Secondary Q06BI2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Caln1  calneuron 1   Caln1_predicted  calneuron 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Caln1_predicted  calneuron 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED