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Gene: Ssc4d (scavenger receptor cysteine rich family member with 4 domains) Rattus norvegicus

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Symbol:

Ssc4d

Name:

scavenger receptor cysteine rich family member with 4 domains

RGD ID:

1306970

Description:

Predicted to be located in membrane. Orthologous to human SSC4D (scavenger receptor cysteine rich family member with 4 domains); INTERACTS WITH 2,4-dinitrotoluene; bisphenol A; Cuprizon.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC304401; scavenger receptor cysteine rich domain containing, group B (4 domains); scavenger receptor cysteine rich family, 4 domains; scavenger receptor cysteine-rich domain-containing group B protein; Srcrb4d

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	26,339,576 - 26,361,317 (+)	NCBI		GRCr8
mRatBN7.2	12	20,702,931 - 20,723,732 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	20,702,950 - 20,718,706 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	12	23,752,823 - 23,769,466 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	23,752,844 - 23,762,877 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	25,746,301 - 25,767,520 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	21,823,241 - 21,833,274 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	21,810,166 - 21,815,157 (+)	NCBI
Celera	12	22,471,349 - 22,487,992 (+)	NCBI		Celera
Cytogenetic Map	12	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ssc4d	Rat	Chromosome 7q11.23 Deletion Syndrome, Distal, 1.2-MB		ISO	RGD:1315886	8554872	ClinVar Annotator: match by term: DISTAL CHROMOSOME 7q11.23 DELETION SYNDROME	ClinVar
Ssc4d	Rat	pleomorphic xanthoastrocytoma		ISO	RGD:1315886	8554872	ClinVar Annotator: match by term: Pleomorphic xanthoastrocytoma	ClinVar	PMID:28299358

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ssc4d	Rat	(+)-catechin	multiple interactions	ISO	RGD:1315886	6480464	[Catechin co-treated with Grape Seed Proanthocyanidins] results in increased expression of SSC4D mRNA	CTD	PMID:24763279
Ssc4d	Rat	(1->4)-beta-D-glucan	multiple interactions	ISO	RGD:1550623	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of SSC4D mRNA	CTD	PMID:36331819
Ssc4d	Rat	1,2-dichloroethane	increases expression	ISO	RGD:1550623	6480464	ethylene dichloride results in increased expression of SSC4D mRNA	CTD	PMID:28960355
Ssc4d	Rat	2,4-dinitrotoluene	affects expression	EXP		6480464	2,4-dinitrotoluene affects the expression of SSC4D mRNA	CTD	PMID:21346803
Ssc4d	Rat	2-palmitoylglycerol	increases expression	ISO	RGD:1315886	6480464	2-palmitoylglycerol results in increased expression of SSC4D mRNA	CTD	PMID:37199045
Ssc4d	Rat	benzo[a]pyrene	decreases expression	ISO	RGD:1315886	6480464	Benzo(a)pyrene results in decreased expression of SSC4D mRNA	CTD	PMID:22316170\|PMID:26238291
Ssc4d	Rat	benzo[a]pyrene	increases methylation	ISO	RGD:1315886	6480464	Benzo(a)pyrene results in increased methylation of SSC4D 3' UTR	CTD	PMID:27901495
Ssc4d	Rat	bisphenol A	decreases expression	ISO	RGD:1315886	6480464	bisphenol A results in decreased expression of SSC4D mRNA	CTD	PMID:19371625
Ssc4d	Rat	bisphenol A	affects expression	ISO	RGD:1315886	6480464	bisphenol A affects the expression of SSC4D mRNA	CTD	PMID:30903817
Ssc4d	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of SSC4D mRNA	CTD	PMID:25181051
Ssc4d	Rat	caffeine	increases expression	ISO	RGD:1315886	6480464	Caffeine results in increased expression of SSC4D protein	CTD	PMID:31195006
Ssc4d	Rat	copper(II) sulfate	decreases expression	ISO	RGD:1315886	6480464	Copper Sulfate results in decreased expression of SSC4D mRNA	CTD	PMID:19549813
Ssc4d	Rat	Cuprizon	decreases expression	EXP		6480464	Cuprizone results in decreased expression of SSC4D mRNA	CTD	PMID:27523638
Ssc4d	Rat	endosulfan	increases expression	EXP		6480464	Endosulfan results in increased expression of SSC4D mRNA	CTD	PMID:29391264
Ssc4d	Rat	entinostat	increases expression	ISO	RGD:1315886	6480464	entinostat results in increased expression of SSC4D mRNA	CTD	PMID:27188386
Ssc4d	Rat	fenvalerate	increases expression	EXP		6480464	fenvalerate results in increased expression of SSC4D mRNA	CTD	PMID:30307764
Ssc4d	Rat	fonofos	increases methylation	ISO	RGD:1315886	6480464	Fonofos results in increased methylation of SSC4D promoter	CTD	PMID:22847954
Ssc4d	Rat	genistein	decreases expression	ISO	RGD:1315886	6480464	Genistein results in decreased expression of SSC4D mRNA	CTD	PMID:19371625
Ssc4d	Rat	gentamycin	decreases expression	EXP		6480464	Gentamicins results in decreased expression of SSC4D mRNA	CTD	PMID:22061828\|PMID:33387578
Ssc4d	Rat	hydrogen peroxide	affects expression	ISO	RGD:1315886	6480464	Hydrogen Peroxide affects the expression of SSC4D mRNA	CTD	PMID:20044591
Ssc4d	Rat	Monobutylphthalate	decreases expression	ISO	RGD:1550623	6480464	monobutyl phthalate results in decreased expression of SSC4D mRNA	CTD	PMID:35278568
Ssc4d	Rat	N-methyl-4-phenylpyridinium	increases expression	ISO	RGD:1315886	6480464	1-Methyl-4-phenylpyridinium results in increased expression of SSC4D mRNA	CTD	PMID:24810058
Ssc4d	Rat	paracetamol	affects expression	ISO	RGD:1550623	6480464	Acetaminophen affects the expression of SSC4D mRNA	CTD	PMID:17562736
Ssc4d	Rat	paraquat	decreases expression	EXP		6480464	Paraquat results in decreased expression of SSC4D mRNA	CTD	PMID:32680482
Ssc4d	Rat	parathion	increases methylation	ISO	RGD:1315886	6480464	Parathion results in increased methylation of SSC4D promoter	CTD	PMID:22847954
Ssc4d	Rat	pentachlorophenol	increases expression	ISO	RGD:1550623	6480464	Pentachlorophenol results in increased expression of SSC4D mRNA	CTD	PMID:23892564
Ssc4d	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	RGD:1550623	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of SSC4D mRNA	CTD	PMID:36331819
Ssc4d	Rat	phenobarbital	multiple interactions	ISO	RGD:1550623	6480464	NR1I3 protein affects the reaction [Phenobarbital results in increased expression of SSC4D mRNA]	CTD	PMID:19482888
Ssc4d	Rat	phenobarbital	increases expression	ISO	RGD:1550623	6480464	Phenobarbital results in increased expression of SSC4D mRNA	CTD	PMID:19482888
Ssc4d	Rat	pirinixic acid	increases expression	ISO	RGD:1550623	6480464	pirinixic acid results in increased expression of SSC4D mRNA	CTD	PMID:18301758
Ssc4d	Rat	rotenone	increases expression	ISO	RGD:1315886	6480464	Rotenone results in increased expression of SSC4D mRNA	CTD	PMID:29955902
Ssc4d	Rat	sunitinib	decreases expression	ISO	RGD:1315886	6480464	Sunitinib results in decreased expression of SSC4D mRNA	CTD	PMID:31533062
Ssc4d	Rat	terbufos	increases methylation	ISO	RGD:1315886	6480464	terbufos results in increased methylation of SSC4D promoter	CTD	PMID:22847954
Ssc4d	Rat	titanium dioxide	decreases methylation	ISO	RGD:1550623	6480464	titanium dioxide results in decreased methylation of SSC4D gene	CTD	PMID:35295148
Ssc4d	Rat	titanium dioxide	increases methylation	ISO	RGD:1550623	6480464	titanium dioxide results in increased methylation of SSC4D gene	CTD	PMID:35295148
Ssc4d	Rat	triclosan	increases expression	ISO	RGD:1315886	6480464	Triclosan results in increased expression of SSC4D mRNA	CTD	PMID:30510588
Ssc4d	Rat	tris(2-butoxyethyl) phosphate	affects expression	ISO	RGD:1315886	6480464	tris(2-butoxyethyl) phosphate affects the expression of SSC4D mRNA	CTD	PMID:29024780
Ssc4d	Rat	urethane	decreases expression	ISO	RGD:1315886	6480464	Urethane results in decreased expression of SSC4D mRNA	CTD	PMID:28818685
Ssc4d	Rat	valproic acid	increases methylation	ISO	RGD:1315886	6480464	Valproic Acid results in increased methylation of SSC4D gene	CTD	PMID:29154799
Ssc4d	Rat	zearalenone	decreases expression	ISO	RGD:1315886	6480464	Zearalenone results in decreased expression of SSC4D mRNA	CTD	PMID:19371625

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ssc4d	Rat	membrane	located_in	IEA	InterPro:IPR001190\|InterPro:IPR036772	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:23376485

Ssc4d
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	26,339,576 - 26,361,317 (+)	NCBI		GRCr8
mRatBN7.2	12	20,702,931 - 20,723,732 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	20,702,950 - 20,718,706 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	12	23,752,823 - 23,769,466 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	23,752,844 - 23,762,877 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	25,746,301 - 25,767,520 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	21,823,241 - 21,833,274 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	21,810,166 - 21,815,157 (+)	NCBI
Celera	12	22,471,349 - 22,487,992 (+)	NCBI		Celera
Cytogenetic Map	12	q12	NCBI

SSC4D
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	76,389,337 - 76,409,697 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	76,389,334 - 76,409,697 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	76,018,654 - 76,039,014 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	75,856,582 - 75,876,948 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	75,663,296 - 75,683,663	NCBI
Celera	7	70,887,164 - 70,907,528 (-)	NCBI		Celera
Cytogenetic Map	7	q11.23	NCBI
HuRef	7	71,105,136 - 71,125,320 (-)	NCBI		HuRef
CHM1_1	7	75,948,914 - 75,969,251 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	77,676,966 - 77,697,378 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	75,351,710 - 75,372,076 (-)	NCBI

Ssc4d
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	135,989,074 - 136,003,389 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	135,989,065 - 136,003,385 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	135,960,220 - 135,974,535 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	135,960,211 - 135,974,531 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	136,436,093 - 136,450,346 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	136,244,850 - 136,259,103 (-)	NCBI		MGSCv36	mm8
Celera	5	132,971,640 - 132,985,893 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	75.6	NCBI

Ssc4d
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955456	14,993,250 - 15,005,664 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955456	14,993,250 - 15,005,664 (-)	NCBI	ChiLan1.0	ChiLan1.0

SSC4D
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	93,544,145 - 93,564,358 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	141,808,787 - 141,828,996 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	67,610,728 - 67,631,061 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	82,835,840 - 82,855,709 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

SSC4D
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	7,555,071 - 7,565,177 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	7,555,790 - 7,564,686 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	9,250,695 - 9,260,464 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	7,375,655 - 7,385,427 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	7,376,374 - 7,385,274 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	7,344,599 - 7,354,367 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	7,307,553 - 7,317,323 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	7,470,657 - 7,480,427 (-)	NCBI		UU_Cfam_GSD_1.0

Ssc4d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	131,997,012 - 132,005,685 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936543	2,030,921 - 2,039,543 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936543	2,030,975 - 2,039,536 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SSC4D
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	9,961,120 - 9,974,320 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	9,960,696 - 9,974,330 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	9,827,697 - 9,862,023 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SSC4D
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	10,536,051 - 10,588,885 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666070	5,834,507 - 5,892,556 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ssc4d
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	15,018,696 - 15,028,465 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	15,018,542 - 15,030,954 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Ssc4d
192 total Variants

Assembly: mRatBN7.2

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
12	20708051	20708052	A	T	snv	FHH/EurMcwi (2019), European Variation Archive Release 3, FHH/EurMcwi (2019NG), European Variation Archive Release 6, European Variation Archive Release 4	View more Information

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
12	23752887	23752888	A	T	snv	FHH/EurMcwi (MCW), FHH/EurMcwi (2019), FHH/EurMcwi (RGD)	View more Information

Predicted Target Of

	Summary Value
Count of predictions:	101
Count of miRNA genes:	81
Interacting mature miRNAs:	83
Transcripts:	ENSRNOT00000001953
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	19144362	46669029	Rat
61443	Btemp2	Thermal response to stress QTL 2	3.3	0.000094	body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	12	15025183	20794014	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
61324	Eae5	Experimental allergic encephalomyelitis QTL 5	14		nervous system integrity trait (VT:0010566)	percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)	12	19610870	46669029	Rat
9590147	Scort7	Serum corticosterone level QTL 7	13.61	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	12	1	42110980	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	9603277	46669029	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	8525423	28064601	Rat
737822	Alc10	Alcohol consumption QTL 10	2.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	12	19610870	40218516	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	15872653	32974238	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	23297788	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	7196730	46669029	Rat
1598855	Bp294	Blood pressure QTL 294	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	1	34851688	Rat
10755457	Coatc14	Coat color QTL 14		0.01759	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	12	1	22591684	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	45055165	Rat
8694179	Bw150	Body weight QTL 150	2.9	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
7411545	Bw128	Body weight QTL 128	5.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	5564495	46669029	Rat
1300157	Rf21	Renal function QTL 21	4.4		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	12	9318216	32103380	Rat
737979	Pia22	Pristane induced arthritis QTL 22	53.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	1	44465750	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	19610889	35682913	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	10474137	46669029	Rat
7411660	Foco28	Food consumption QTL 28	10.9	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
1331755	Bp219	Blood pressure QTL 219	3.041		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	28064557	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	19835789	38193007	Rat
2306789	Ean6	Experimental allergic neuritis QTL 6	4.9		nervous system integrity trait (VT:0010566)	experimental autoimmune neuritis severity score (CMO:0001528)	12	19610870	24139202	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	20328819	46669029	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	19610870	42828880	Rat
1549912	Bp268	Blood pressure QTL 268			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	13182736	46669029	Rat
2302060	Pia37	Pristane induced arthritis QTL 37	6.1	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	13198157	46669029	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	12812385	46669029	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564498	46669029	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	6107579	46669029	Rat
1581516	Cm56	Cardiac mass QTL 56	4.2	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	1	29333307	Rat
9590086	Insglur6	Insulin/glucose ratio QTL 6	18.97	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	12	1	42110980	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
1549902	Bp269	Blood pressure QTL 269			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	13182736	46669029	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	12351619	46669029	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	11073825	24234895	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	10474137	46669029	Rat
634351	Apr5	Acute phase response QTL 5	6.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	12	1	44503507	Rat
634350	Apr4	Acute phase response QTL 4	6		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	1172005	46172005	Rat
61416	Pia4	Pristane induced arthritis QTL 4	8.4		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	12	13635523	30827399	Rat
631521	Pia12	Pristane induced arthritis QTL 12	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	20259417	23672083	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	36247923	Rat
61421	Cia12	Collagen induced arthritis QTL 12	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	13635523	35682913	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	12812385	46669029	Rat
7411586	Foco5	Food consumption QTL 5	5.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	1	42450532	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
2302042	Pia38	Pristane induced arthritis QTL 38	3.5	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	1	44503507	Rat
7411595	Foco9	Food consumption QTL 9	4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	8449490	28302290	Rat
631543	Bp83	Blood pressure QTL 83	5.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	15550826	38478808	Rat

RH132889

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	20,718,470 - 20,718,656 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	23,763,306 - 23,763,491	NCBI	Rnor6.0
Rnor_5.0	12	25,761,954 - 25,762,139	UniSTS	Rnor5.0
RGSC_v3.4	12	21,833,703 - 21,833,888	UniSTS	RGSC3.4
Celera	12	22,481,832 - 22,482,017	UniSTS
RH 3.4 Map	12	299.8	UniSTS
Cytogenetic Map	12	q12	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001431720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598501	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598502	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598503	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC091514	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001953 ⟹ ENSRNOP00000001953

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	20,702,950 - 20,718,706 (+)	Ensembl
Rnor_6.0 Ensembl	12	23,752,844 - 23,762,877 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098416 ⟹ ENSRNOP00000094918

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	20,716,619 - 20,718,706 (+)	Ensembl

RefSeq Acc Id:

XM_017598501 ⟹ XP_017453990

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	26,339,597 - 26,355,360 (+)	NCBI
mRatBN7.2	12	20,702,951 - 20,718,713 (+)	NCBI
Rnor_6.0	12	23,752,823 - 23,763,548 (+)	NCBI

Sequence:

show sequence

TGACTTCTCCTCCGATACCTGATGGGACCGCCTGAAAGGCCATCCCTTGGCTGGACACCCAAGGAAGCAGACATGCAAAGTGGCCCCCAGCCCGATGAATGGAGCAGTGGATGGAAGCCTGGGGATGG
GGGTGCTGCCCCCTTGCCCCTCTCCCCAGCACTGTCCTTCCTTCTTCTGTTCCCACTGGCGAGTGCCCTCCAGCCCACTCCTCTGCCCTTTCCAGAGCTGAGGCTGGTAGGGGGTCCAAGCCGCTGCC
GAGGGCGCCTGGAGGTCATGCACAGCGGTTCCTGGGGCAGCGTTTGCGACGATGACTGGGACGTTGTGGATGCCAACGTGGTGTGTCGTCAGCTGGGCTGTGGCCTGGCATTGCCGGTGCCGCGGCCC
CTCACCTTTGGCCAGGGCAGAGGGCCCATTTTCCTGGATAATGTGGAATGCCGCGGGCAGGAAGCGTCTCTGAGCGAGTGTGGCAGCAGGGGCTGGGGTGTCCACAACTGCTTTCACTATGAAGATGT
GGCGGTCCTGTGTGATGAATTCTTGCATACACAGCCCCCAGCAAGGAAGGTGTTGACCAGTATAGCGCCCCCTACAGCCCTCCAAAATGGGAGAGGTGAGGGCAGCGTGCGCCTGGCGGGCGGTGCCA
GCCCGTGTCAAGGCCGAGTGGAGATTCTGCACGGTGGCCTCTGGGGCACTGTATGCGACGATGACTGGGGGCTGCCGGATGCTGCTGTTGTGTGCCGCCAGCTGGGCTGTGGGGCCGCCTTGGCTGCC
ACCACTAACGCCTTTTTCGGCTACGGTACCGGGCATATCCTGCTGGACAACGTTCACTGCGAAGGCGGGGAGCCCCGCCTGGCAGCCTGCCAGAGCCTAGGCTGGGGCGTGCACAACTGCGGACACCA
CGAGGATGCTGGGGTGCTCTGTGCAGTTCTGAGCCCTCCAACTTCCACAGCACTGCCTCCCTCTGTCACCAAAGAAGACTGGGCATGGCACACTGAGCCAGCAGCTACAGGAGTTGGTGCCCTGCCTT
CCAGGGATACCATACGGTTCACCACGGCAGCCTGGGCCTCAGGGAAGAAAAGCGGTAGGCTGAGGCTAGTAGGCGGCCCCAGCCCTTGTCGCGGTCGCGTGGAGGTGCTGTACGCCGGAGGTTGGGGC
ACCGTGTGCGACGATGACTGGGACTTCGCGGACGCGCGCGTGGCCTGTCGCGAGGCGGGTTGTGGGCCTGCGCTAGGCGCCACGGGCCTTGGTCATTTTGGCTATGGCCGAGGCCCTGTGCTGCTGGA
CAACGTAGGCTGCACCGGTACCGAAGCCCGCCTCAGCGACTGCTTCCATCTGGGCTGGGGCCAGCACAATTGCGGCCACCACGAAGACGCTGGAGCTTTGTGCGCAGGCCCAGAGGAGCTGGGACTCC
AGGTCCAGCAGGATGGTTCTGAGACCACCCGAATGCCCAGTCCTCGGCCCAGAGATGGGCACCTCCGTCTGGCTAGTGGAACCCACCGATGTGAAGGGCGTGTAGAACTCTTCCTGGGACAGCAGTGG
GGCACTGTTTGTGATGACGCCTGGGACCTACGGGCAGCCATTGTCCTGTGCCGTCAGCTGGGATGTGGCCAGGCTCTGGCAGCCCTAGGCGAGGCCCACTTTGGCCCAGGCCGAGGCCCAATCCTCTT
GGACAATGTCAAATGCCGAGGAGACGAGAGCACCTTGCTACTTTGCTCTCACATCCGCTGGGATGTCCACAACTGTGACCACAGCGAGGATGCCAGTGTCCTCTGCCAGCCATTGTGACCCAGACAGC
TCTGCACTCCGTATCATGTCAAAGGAGCCTATGGGAAACTGCCTCTGCTTTTCCAGGATGCTTTCCTATGATAGCTCCAGGTCCTGGTGCCCTTTCTCCCCATGCATGGGGGAGAAATGAAGTACCTG
CCTGCATCCTCTTTACTGTGTGGCCTGAGACTGTTGTCAGCTGCTGAAGGCCCAGTACAGTGAACACAGCAATGTTTTGCCTCAGTCAGAACAGAAAATGTGGGAGAATGACTCACTTCTCTTTGGGG
GAACTCTTATTATATAGTACCCCTGATCTTTCCTCTCTCCACCCATAGCCATGAGGCTCTCTGTAAAGGCCTTCAAACCTTCCAGTGACCTATCTTGGTCTCCCCCTAAAAGTGGGGAGACAGGAGGG
GTTGGGGGTGCTCTTTTTTATAGACTGGCAGGGGACTGCAGAAGATCCCAGGTCATCACCTTCCCTGCTGGGTGAGGACCTGGACTCAGATGGTGCTCAGCTGAACAAGGGGGCTGCAGGGGCCAAAG
CAGGGACAAAAGGAGCCCTTCCTGCAGCAACTCTGATTACCACTCCCCCCGCCACAGAGCCTCCACTTTGCAGTAGCAAAGAAGCCTGGAGGCCCATAGCCACTGTTCATAGGTGCCAAGTCAATAAA
GCACTATCCCCCATCTTTTAA

hide sequence

RefSeq Acc Id:

XM_017598503 ⟹ XP_017453992

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	26,339,581 - 26,361,317 (+)	NCBI
mRatBN7.2	12	20,702,936 - 20,723,732 (+)	NCBI
Rnor_6.0	12	23,752,823 - 23,769,466 (+)	NCBI

Sequence:

show sequence

TGACTTCTCCTCCGATACCTGATGGGACCGCCTGAAAGGCCATCCCTTGGCTGGACACCCAAGG
AAGCAGACATGCAAAGTGGCCCCCAGCCCGATGAATGGAGCAGTGGATGGAAGCCTGGGGATGGGGGTGCTGCCCCCTTGCCCCTCTCCCCAGCACTGTCCTTCCTTCTTCTGTTCCCACTGGCGAGT
GCCCTCCAGCCCACTCCTCTGCCCTTTCCAGAGCTGAGGCTGGTAGGGGGTCCAAGCCGCTGCCGAGGGCGCCTGGAGGTCATGCACAGCGGTTCCTGGGGCAGCGTTTGCGACGATGACTGGGACGT
TGTGGATGCCAACGTGGTGTGTCGTCAGCTGGGCTGTGGCCTGGCATTGCCGGTGCCGCGGCCCCTCACCTTTGGCCAGGGCAGAGGGCCCATTTTCCTGGATAATGTGGAATGCCGCGGGCAGGAAG
CGTCTCTGAGCGAGTGTGGCAGCAGGGGCTGGGGTGTCCACAACTGCTTTCACTATGAAGATGTGGCGGTCCTGTGTGATGAATTCTTGCATACACAGCCCCCAGCAAGGAAGGTGTTGACCAGTATA
GCGCCCCCTACAGCCCTCCAAAATGGGAGAGGTGAGGGCAGCGTGCGCCTGGCGGGCGGTGCCAGCCCGTGTCAAGGCCGAGTGGAGATTCTGCACGGTGGCCTCTGGGGCACTGTATGCGACGATGA
CTGGGGGCTGCCGGATGCTGCTGTTGTGTGCCGCCAGCTGGGCTGTGGGGCCGCCTTGGCTGCCACCACTAACGCCTTTTTCGGCTACGGTACCGGGCATATCCTGCTGGACAACGTTCACTGCGAAG
GCGGGGAGCCCCGCCTGGCAGCCTGCCAGAGCCTAGGCTGGGGCGTGCACAACTGCGGACACCACGAGGATGCTGGGGTGCTCTGTGCAGTTCTGAGCCCTCCAACTTCCACAGCACTGCCTCCCTCT
GTCACCAAAGAAGACTGGGCATGGCACACTGAGCCAGCAGCTACAGGAGTTGGTGCCCTGCCTTCCAGGGATACCATACGGTTCACCACGGCAGCCTGGGCCTCAGGGAAGAAAAGCGGTAGGCTGAG
GCTAGTAGGCGGCCCCAGCCCTTGTCGCGGTCGCGTGGAGGTGCTGTACGCCGGAGGTTGGGGCACCGTGTGCGACGATGACTGGGACTTCGCGGACGCGCGCGTGGCCTGTCGCGAGGCGGGTTGTG
GGCCTGCGCTAGGCGCCACGGGCCTTGGTCATTTTGGCTATGGCCGAGGCCCTGTGCTGCTGGACAACGTAGGCTGCACCGGTACCGAAGCCCGCCTCAGCGACTGCTTCCATCTGGGCTGGGGCCAG
CACAATTGCGGCCACCACGAAGACGCTGGAGCTTTGTGCGCAGGCCCAGAGGAGCTGGGACTCCAGGTCCAGCAGGATGGTTCTGAGACCACCCGAATGCCCAGTCCTCGGCCCAGAGATGGGGAGGC
TTCAGACTTGATGAGAAGCTGCAGACACCGAGGCACCTGCTCCCTGCCACATAGTCAATTTTCCGTCTTGGGATCTCTGCATGAGTTGGAAAAGTCCGTTTCTCTGCCGAGCAGGCGGCTCAGGGGAA
CCCTTTCTATTTGATAAATATCTTCTTCCATCCACGTGGCCACCTTGGAAAGTGAACGTTGCCTCTACCTTTAAAAAAAAAAATAACTGATTTAATTTCATGTGCATTGGTGTGAAGGGGTCAGATCC
TTGGGAACTAGAGTGTTACAGTTATCGGCTGCCACATGGGTACTGGGAATTGAACCCAGGTTCTCTGAAAGAACAGATGGTGCTCTCAACCGCCAAACCATCTCCCCAGCCCCATCTCTACTCGTTAG
GTGAGGAAACTGAACATCAAAAGTAGAGCTTTGACTGGGTGGTGGGGGTGCATACCTTTAATCCCAACACAGGGGAGGCAAAACCCGCTGGATCTTGAATTCGAGGCCAGCCTTGTCAGAGTGAGTTC
TGGGACAGCCAGTGCTACACAGAGACACCATGTCTCAAAAAAAAAAAAAAAAAAAAAAATAGTGTTTTAGGCCAGTGATGAAGCTCACATGTAAAGGTAATTGCTTGAAACAGCCTGACAATCTGACA
ACGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTAATGTATACCTATGGATACAAGCATGCCTGGGCCAGCATACACAGGTGGAGTCGGCAGAGAGGACAGTTTGTGGGAGTC
AGTACTCCCTACCATGTGAATCCTAGGGAATCGAACTGAGATCCTTCAGGCTTGGCCTCAGGCACCTTTCCTTGTTGAGCCACCTTGCCGGCCCAGTGGTTAGGGATTTTAGAAGTTAAGCATCCGTG
AGAGCTGCCTGCACAAACTGCTTGGCTCTTCCCCTCTTCATTCATTCTCGTCCATAATGCTGCACATGTAATGCAAGCTGACCACAATGTCTTGATCCCCCTCTGCCATCTCCTGAGGAGACATCTAC
AGGCATGCCCCACTGCTCCTGGCAAAATCTTTACTATTCCAGCACTTGGGAAGCAGAGGCCAGAGAAGCTCTGTGAGCTCCAGGATCGCTAGAGCTGCACAGTG

hide sequence

RefSeq Acc Id:

XM_017598504 ⟹ XP_017453993

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	26,339,590 - 26,355,360 (+)	NCBI
mRatBN7.2	12	20,702,952 - 20,718,713 (+)	NCBI
Rnor_6.0	12	23,752,823 - 23,763,548 (+)	NCBI

Sequence:

show sequence

TGACTTCTCCTCCGATACCTGATGGGACCGCCTGAAAGGCCATCCCTTGGCTGGACACCCAAGGAAGCAGACATGCAAAGTGGCCCCCAGCCCGATGAATGGAGCAGTGGATGGAAGCCTGGGGATGG
GGGTGCTGCCCCCTTGCCCCTCTCCCCAGCACTGTCCTTCCTTCTTCTGTTCCCACTGGCGAGTGCCCTCCAGCCCACTCCTCTGCCCTTTCCAGAGCTGAGGCTGGTAGGGGGTCCAAGCCGCTGCC
GAGGGCGCCTGGAGGTCATGCACAGCGGTTCCTGGGGCAGCGTTTGCGACGATGACTGGGACGTTGTGGATGCCAACGTGGTGTGTCGTCAGCTGGGCTGTGGCCTGGCATTGCCGGTGCCGCGGCCC
CTCACCTTTGGCCAGGGCAGAGGGCCCATTTTCCTGGATAATGTGGAATGCCGCGGGCAGGAAGCGTCTCTGAGCGAGTGTGGCAGCAGGGGCTGGGGTGTCCACAACTGCTTTCACTATGAAGATGT
GGCGGTCCTGTGTGATGAATTCTTGCATACACAGCCCCCAGCAAGGAAGGTGTTGACCAGTATAGCGCCCCCTACAGCCCTCCAAAATGGGAGAGGTGAGGGCAGCGTGCGCCTGGCGGGCGGTGCCA
GCCCGTGTCAAGGCCGAGTGGAGATTCTGCACGGTGGCCTCTGGGGCACTGTATGCGACGATGACTGGGGGCTGCCGGATGCTGCTGTTGTGTGCCGCCAGCTGGGCTGTGGGGCCGCCTTGGCTGCC
ACCACTAACGCCTTTTTCGGCTACGGTACCGGGCATATCCTGCTGGACAACGTTCACTGCGAAGGCGGGGAGCCCCGCCTGGCAGCCTGCCAGAGCCTAGGCTGGGGCGTGCACAACTGCGGACACCA
CGAGGATGCTGGGGTGCTCTGTGCAGTTCTGAGCCCTCCAACTTCCACAGCACTGCCTCCCTCTGTCACCAAAGAAGACTGGGCATGGCACACTGAGCCAGCAGCTACAGGAGTTGGTGCCCTGCCTT
CCAGGGATACCATACGGTTCACCACGGCAGCCTGGGCCTCAGGGAAGAAAAGCCCAGAGGAGCTGGGACTCCAGGTCCAGCAGGATGGTTCTGAGACCACCCGAATGCCCAGTCCTCGGCCCAGAGAT
GGGCACCTCCGTCTGGCTAGTGGAACCCACCGATGTGAAGGGCGTGTAGAACTCTTCCTGGGACAGCAGTGGGGCACTGTTTGTGATGACGCCTGGGACCTACGGGCAGCCATTGTCCTGTGCCGTCA
GCTGGGATGTGGCCAGGCTCTGGCAGCCCTAGGCGAGGCCCACTTTGGCCCAGGCCGAGGCCCAATCCTCTTGGACAATGTCAAATGCCGAGGAGACGAGAGCACCTTGCTACTTTGCTCTCACATCC
GCTGGGATGTCCACAACTGTGACCACAGCGAGGATGCCAGTGTCCTCTGCCAGCCATTGTGACCCAGACAGCTCTGCACTCCGTATCATGTCAAAGGAGCCTATGGGAAACTGCCTCTGCTTTTCCAG
GATGCTTTCCTATGATAGCTCCAGGTCCTGGTGCCCTTTCTCCCCATGCATGGGGGAGAAATGAAGTACCTGCCTGCATCCTCTTTACTGTGTGGCCTGAGACTGTTGTCAGCTGCTGAAGGCCCAGT
ACAGTGAACACAGCAATGTTTTGCCTCAGTCAGAACAGAAAATGTGGGAGAATGACTCACTTCTCTTTGGGGGAACTCTTATTATATAGTACCCCTGATCTTTCCTCTCTCCACCCATAGCCATGAGG
CTCTCTGTAAAGGCCTTCAAACCTTCCAGTGACCTATCTTGGTCTCCCCCTAAAAGTGGGGAGACAGGAGGGGTTGGGGGTGCTCTTTTTTATAGACTGGCAGGGGACTGCAGAAGATCCCAGGTCAT
CACCTTCCCTGCTGGGTGAGGACCTGGACTCAGATGGTGCTCAGCTGAACAAGGGGGCTGCAGGGGCCAAAGCAGGGACAAAAGGAGCCCTTCCTGCAGCAACTCTGATTACCACTCCCCCCGCCACA
GAGCCTCCACTTTGCAGTAGCAAAGAAGCCTGGAGGCCCATAGCCACTGTTCATAGGTGCCAAGTCAATAAAGCACTATCCCCCATCTTTTAA

hide sequence

RefSeq Acc Id:

XM_039090072 ⟹ XP_038946000

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	26,339,590 - 26,355,360 (+)	NCBI
mRatBN7.2	12	20,702,951 - 20,718,713 (+)	NCBI

RefSeq Acc Id:

XM_039090074 ⟹ XP_038946002

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	26,339,576 - 26,361,317 (+)	NCBI
mRatBN7.2	12	20,702,931 - 20,723,732 (+)	NCBI

RefSeq Acc Id:

XM_063271880 ⟹ XP_063127950

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	26,339,590 - 26,355,360 (+)	NCBI


Protein RefSeqs	NP_001418649	(Get FASTA)	NCBI Sequence Viewer
	NP_001418651	(Get FASTA)	NCBI Sequence Viewer
	NP_001418652	(Get FASTA)	NCBI Sequence Viewer
	NP_001418653	(Get FASTA)	NCBI Sequence Viewer
	NP_001418654	(Get FASTA)	NCBI Sequence Viewer
	NP_001418655	(Get FASTA)	NCBI Sequence Viewer
	NP_001418656	(Get FASTA)	NCBI Sequence Viewer
	NP_001418657	(Get FASTA)	NCBI Sequence Viewer
	XP_017453990	(Get FASTA)	NCBI Sequence Viewer
	XP_017453992	(Get FASTA)	NCBI Sequence Viewer
	XP_017453993	(Get FASTA)	NCBI Sequence Viewer
	XP_038946000	(Get FASTA)	NCBI Sequence Viewer
	XP_038946002	(Get FASTA)	NCBI Sequence Viewer
	XP_063127950	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM13337	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001953
	ENSRNOP00000001953.5
	ENSRNOP00000094918.1
	ENSRNOP00000111627

RefSeq Acc Id:	XP_017453992 ⟸ XM_017598503
- Peptide Label:	isoform X2
- UniProtKB:	A6J097 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGPPERPSLGWTPKEADMQSGPQPDEWSSGWKPGDGGAAPLPLSPALSFLLLFPLASALQPTPLPFPELRLVGGPSRCRGRLEVMHSGSWGSVCDDDWDVVDANVVCRQLGCGLALPVPRPLTFGQGR GPIFLDNVECRGQEASLSECGSRGWGVHNCFHYEDVAVLCDEFLHTQPPARKVLTSIAPPTALQNGRGEGSVRLAGGASPCQGRVEILHGGLWGTVCDDDWGLPDAAVVCRQLGCGAALAATTNAFFG YGTGHILLDNVHCEGGEPRLAACQSLGWGVHNCGHHEDAGVLCAVLSPPTSTALPPSVTKEDWAWHTEPAATGVGALPSRDTIRFTTAAWASGKKSGRLRLVGGPSPCRGRVEVLYAGGWGTVCDDDW DFADARVACREAGCGPALGATGLGHFGYGRGPVLLDNVGCTGTEARLSDCFHLGWGQHNCGHHEDAGALCAGPEELGLQVQQDGSETTRMPSPRPRDGEASDLMRSCRHRGTCSLPHSQFSVLGSLHE LEKSVSLPSRRLRGTLSI hide sequence

RefSeq Acc Id:

XP_017453990 ⟸ XM_017598501

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGPPERPSLGWTPKEADMQSGPQPDEWSSGWKPGDGGAAPLPLSPALSFLLLFPLASALQPTPL
PFPELRLVGGPSRCRGRLEVMHSGSWGSVCDDDWDVVDANVVCRQLGCGLALPVPRPLTFGQGRGPIFLDNVECRGQEASLSECGSRGWGVHNCFHYEDVAVLCDEFLHTQPPARKVLTSIAPPTALQ
NGRGEGSVRLAGGASPCQGRVEILHGGLWGTVCDDDWGLPDAAVVCRQLGCGAALAATTNAFFGYGTGHILLDNVHCEGGEPRLAACQSLGWGVHNCGHHEDAGVLCAVLSPPTSTALPPSVTKEDWA
WHTEPAATGVGALPSRDTIRFTTAAWASGKKSGRLRLVGGPSPCRGRVEVLYAGGWGTVCDDDWDFADARVACREAGCGPALGATGLGHFGYGRGPVLLDNVGCTGTEARLSDCFHLGWGQHNCGHHE
DAGALCAGPEELGLQVQQDGSETTRMPSPRPRDGHLRLASGTHRCEGRVELFLGQQWGTVCDDAWDLRAAIVLCRQLGCGQALAALGEAHFGPGRGPILLDNVKCRGDESTLLLCSHIRWDVHNCDHS
EDASVLCQPL

hide sequence

RefSeq Acc Id:	XP_017453993 ⟸ XM_017598504
- Peptide Label:	isoform X3
- UniProtKB:	A6J097 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGPPERPSLGWTPKEADMQSGPQPDEWSSGWKPGDGGAAPLPLSPALSFLLLFPLASALQPTPL PFPELRLVGGPSRCRGRLEVMHSGSWGSVCDDDWDVVDANVVCRQLGCGLALPVPRPLTFGQGRGPIFLDNVECRGQEASLSECGSRGWGVHNCFHYEDVAVLCDEFLHTQPPARKVLTSIAPPTALQ NGRGEGSVRLAGGASPCQGRVEILHGGLWGTVCDDDWGLPDAAVVCRQLGCGAALAATTNAFFGYGTGHILLDNVHCEGGEPRLAACQSLGWGVHNCGHHEDAGVLCAVLSPPTSTALPPSVTKEDWA WHTEPAATGVGALPSRDTIRFTTAAWASGKKSPEELGLQVQQDGSETTRMPSPRPRDGHLRLASGTHRCEGRVELFLGQQWGTVCDDAWDLRAAIVLCRQLGCGQALAALGEAHFGPGRGPILLDNVK CRGDESTLLLCSHIRWDVHNCDHSEDASVLCQPL hide sequence

Ensembl Acc Id:

ENSRNOP00000001953 ⟸ ENSRNOT00000001953

RefSeq Acc Id:	XP_038946002 ⟸ XM_039090074
- Peptide Label:	isoform X5

Protein Domains

SRCR

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZQH3-F1-model_v2	AlphaFold	D3ZQH3	1-586	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-19642	BioCyc
Ensembl Genes	ENSRNOG00000001435	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000001953	ENTREZGENE
	ENSRNOT00000001953.7	UniProtKB/TrEMBL
	ENSRNOT00000098416.1	UniProtKB/TrEMBL
	ENSRNOT00000138849	ENTREZGENE
Gene3D-CATH	3.10.250.10	UniProtKB/TrEMBL
InterPro	SRCR-like_dom_sf	UniProtKB/TrEMBL
	Srcr_rcpt	UniProtKB/TrEMBL
KEGG Report	rno:304401	UniProtKB/TrEMBL
NCBI Gene	304401	ENTREZGENE
PANTHER	DELETED IN MALIGNANT BRAIN TUMORS 1 PROTEIN-LIKE	UniProtKB/TrEMBL
	SCAVENGER RECEPTOR CYSTEINE-RICH TYPE 1 PROTEIN M130-LIKE	UniProtKB/TrEMBL
	SRCR DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
Pfam	SRCR	UniProtKB/TrEMBL
PhenoGen	Ssc4d	PhenoGen
PRINTS	SPERACTRCPTR	UniProtKB/TrEMBL
PROSITE	SRCR_1	UniProtKB/TrEMBL
	SRCR_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000001435	RatGTEx
SMART	SM00202	UniProtKB/TrEMBL
Superfamily-SCOP	Srcr_receptor	UniProtKB/TrEMBL
UniProt	A0A8I6ANW2	ENTREZGENE, UniProtKB/TrEMBL
	A6J097	ENTREZGENE, UniProtKB/TrEMBL
	A6J099	ENTREZGENE, UniProtKB/TrEMBL
	A6J0A0	ENTREZGENE, UniProtKB/TrEMBL
	D3ZQH3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-05-04	Ssc4d	scavenger receptor cysteine rich family member with 4 domains	Ssc4d	scavenger receptor cysteine rich family, 4 domains	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2014-07-16	Ssc4d	scavenger receptor cysteine rich family, 4 domains	Srcrb4d	scavenger receptor cysteine rich domain containing, group B (4 domains)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Srcrb4d	scavenger receptor cysteine rich domain containing, group B (4 domains)	Srcrb4d_predicted	scavenger receptor cysteine rich domain containing, group B (4 domains) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Srcrb4d_predicted	scavenger receptor cysteine rich domain containing, group B (4 domains) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar