Sfswap (splicing factor SWAP) - Rat Genome Database

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Gene: Sfswap (splicing factor SWAP) Rattus norvegicus
Analyze
Symbol: Sfswap
Name: splicing factor SWAP
RGD ID: 1305004
Description: Predicted to have RNA binding activity. Involved in negative regulation of mRNA splicing, via spliceosome. Predicted to localize to nucleus. Orthologous to human SFSWAP (splicing factor SWAP); INTERACTS WITH bisphenol A; decabromodiphenyl ether; 1,2-dimethylhydrazine (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC304431; MGC125102; serine/arginine-rich splicing factor 8; Sfrs8; splicing factor SWAP homolog; splicing factor, arginine/serine-rich 8; splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila); splicing factor, suppressor of white-apricot family; splicing factor, suppressor of white-apricot homolog; splicing factor, suppressor of white-apricot homolog (Drosophila); Srsf8; suppressor of white apricot protein homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21227,109,607 - 27,179,941 (-)NCBI
Rnor_6.0 Ensembl1230,740,520 - 30,811,054 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01230,740,563 - 30,811,015 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01232,675,284 - 32,745,308 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41228,179,091 - 28,249,425 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11228,039,375 - 28,112,849 (-)NCBI
Celera1228,813,478 - 28,883,636 (-)NCBICelera
Cytogenetic Map12q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References

Additional References at PubMed
PMID:8940107   PMID:12477932  


Genomics

Comparative Map Data
Sfswap
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21227,109,607 - 27,179,941 (-)NCBI
Rnor_6.0 Ensembl1230,740,520 - 30,811,054 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01230,740,563 - 30,811,015 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01232,675,284 - 32,745,308 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41228,179,091 - 28,249,425 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11228,039,375 - 28,112,849 (-)NCBI
Celera1228,813,478 - 28,883,636 (-)NCBICelera
Cytogenetic Map12q13NCBI
SFSWAP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12131,711,081 - 131,799,737 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl12131,711,081 - 131,799,738 (+)EnsemblGRCh38hg38GRCh38
GRCh3812131,711,088 - 131,799,738 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712132,195,635 - 132,284,283 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612130,761,588 - 130,850,235 (+)NCBINCBI36hg18NCBI36
Build 3412130,861,864 - 130,950,512NCBI
Celera12131,812,182 - 131,900,934 (+)NCBI
Cytogenetic Map12q24.33NCBI
HuRef12129,080,987 - 129,170,070 (+)NCBIHuRef
CHM1_112132,010,269 - 132,105,145 (+)NCBICHM1_1
Sfswap
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395129,578,286 - 129,648,448 (+)NCBIGRCm39mm39
GRCm39 Ensembl5129,578,285 - 129,648,448 (+)Ensembl
GRCm385129,501,231 - 129,571,384 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5129,501,221 - 129,571,384 (+)EnsemblGRCm38mm10GRCm38
MGSCv375130,007,106 - 130,077,259 (+)NCBIGRCm37mm9NCBIm37
MGSCv365129,815,939 - 129,886,092 (+)NCBImm8
Celera5126,543,991 - 126,614,293 (+)NCBICelera
Cytogenetic Map5G1.3NCBI
Sfswap
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955482808,632 - 871,402 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955482808,684 - 871,377 (-)NCBIChiLan1.0ChiLan1.0
SFSWAP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112133,793,149 - 133,881,150 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12133,793,300 - 133,880,910 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012129,362,704 - 129,450,678 (+)NCBIMhudiblu_PPA_v0panPan3
SFSWAP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1261,035,059 - 1,104,730 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl261,035,074 - 1,104,694 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha261,083,285 - 1,153,081 (-)NCBI
ROS_Cfam_1.0261,101,263 - 1,171,503 (-)NCBI
UMICH_Zoey_3.1261,038,422 - 1,108,212 (-)NCBI
UNSW_CanFamBas_1.0261,134,994 - 1,204,741 (-)NCBI
UU_Cfam_GSD_1.0261,058,218 - 1,128,003 (-)NCBI
LOC101954574
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118122,600,083 - 122,666,141 (-)NCBI
SpeTri2.0NW_0049366602,055,180 - 2,121,008 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SFSWAP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1423,516,257 - 23,594,257 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11423,516,253 - 23,594,252 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21424,981,763 - 25,059,559 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103239423
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111127,086,690 - 127,177,327 (+)NCBI
ChlSab1.1 Ensembl11127,086,668 - 127,177,324 (+)Ensembl
Sfswap
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474727,588,684 - 27,653,704 (+)NCBI

Position Markers
D16S505  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01230,803,111 - 30,803,228NCBIRnor6.0
Rnor_6.03135,738,830 - 135,739,623NCBIRnor6.0
Rnor_5.01232,737,419 - 32,737,536UniSTSRnor5.0
Rnor_5.03142,185,974 - 142,186,767UniSTSRnor5.0
RGSC_v3.41228,241,572 - 28,241,689UniSTSRGSC3.4
RGSC_v3.43129,992,101 - 129,992,894UniSTSRGSC3.4
Celera1228,875,783 - 28,875,900UniSTS
Celera3127,675,514 - 127,676,307UniSTS
Cytogenetic Map3q41UniSTS
Cytogenetic Map12q13UniSTS
AW212079  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01230,740,696 - 30,740,789NCBIRnor6.0
Rnor_5.01232,675,417 - 32,675,510UniSTSRnor5.0
RGSC_v3.41228,179,221 - 28,179,314UniSTSRGSC3.4
Celera1228,813,608 - 28,813,701UniSTS
Cytogenetic Map12q13UniSTS
BF405946  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01230,762,880 - 30,763,073NCBIRnor6.0
Rnor_5.01232,697,601 - 32,697,794UniSTSRnor5.0
RGSC_v3.41228,201,405 - 28,201,598UniSTSRGSC3.4
Celera1228,835,792 - 28,835,985UniSTS
RH 3.4 Map12447.0UniSTS
Cytogenetic Map12q13UniSTS
RH135132  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01230,760,503 - 30,761,748NCBIRnor6.0
Rnor_5.01232,695,224 - 32,696,469UniSTSRnor5.0
RGSC_v3.41228,199,028 - 28,200,273UniSTSRGSC3.4
Celera1228,833,415 - 28,834,660UniSTS
RH 3.4 Map12454.3UniSTS
Cytogenetic Map12q13UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12130749723Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12136919844Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12138334225Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)1215081045150810Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1215081045150810Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)1215081045150810Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1215081045150810Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1215081045150810Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1215081045150810Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)1215081045150810Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)1249257845492578Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12247568747475687Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12251344247513442Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12251344247513442Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12421005149210051Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6922362652716770Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12922362652716770Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12922362652716770Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12922362652716770Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12922362652716770Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12922362652716770Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12922363052716770Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12978983452716770Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121017588931975590Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)121025689031723732Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)121176499537522089Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121312721131723688Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121312721150320041Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121441977552716770Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121502198652716770Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121571460935964508Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121571460941291738Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121590890052716770Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121590890052716770Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121718558044098244Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121796086538409001Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121834247752716770Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121834247752716770Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121872904352716770Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121875259352716770Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101875259352716770Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)122265070245946937Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)122265070248598906Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)122265070252716770Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)122265072141291738Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)122287629743799153Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122490659052716770Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122609884552716770Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122719024042196641Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)122728547336161779Rat
8693658Alc33Alcohol consumption QTL 332.10.68drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122911360949560679Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122911360950757185Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:258
Count of miRNA genes:165
Interacting mature miRNAs:190
Transcripts:ENSRNOT00000001235
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 30 28 13 19 13 1 2 74 31 38 11 1
Low 13 29 28 28 7 9 4 3 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001034924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC091384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC105868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000001235   ⟹   ENSRNOP00000001235
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1230,740,566 - 30,810,964 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000077977   ⟹   ENSRNOP00000070951
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1230,740,520 - 30,811,054 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093199
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1230,750,888 - 30,751,544 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093237   ⟹   ENSRNOP00000076174
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1230,740,563 - 30,811,000 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093278
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1230,740,566 - 30,762,467 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093286
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1230,809,207 - 30,811,000 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093391
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1230,807,853 - 30,808,550 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093652
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1230,741,155 - 30,742,491 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093734   ⟹   ENSRNOP00000076147
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1230,761,901 - 30,770,791 (-)Ensembl
RefSeq Acc Id: NM_001034924   ⟹   NP_001030096
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21227,109,610 - 27,179,884 (-)NCBI
Rnor_6.01230,740,566 - 30,810,964 (-)NCBI
Rnor_5.01232,675,284 - 32,745,308 (-)NCBI
RGSC_v3.41228,179,091 - 28,249,425 (-)RGD
Celera1228,813,478 - 28,883,636 (-)RGD
Sequence:
RefSeq Acc Id: XM_006249269   ⟹   XP_006249331
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21227,109,607 - 27,179,939 (-)NCBI
Rnor_6.01230,740,563 - 30,811,014 (-)NCBI
Rnor_5.01232,675,284 - 32,745,308 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006249270   ⟹   XP_006249332
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21227,109,607 - 27,179,939 (-)NCBI
Rnor_6.01230,740,563 - 30,811,014 (-)NCBI
Rnor_5.01232,675,284 - 32,745,308 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006249271   ⟹   XP_006249333
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21227,109,607 - 27,179,938 (-)NCBI
Rnor_6.01230,740,563 - 30,811,014 (-)NCBI
Rnor_5.01232,675,284 - 32,745,308 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006249273   ⟹   XP_006249335
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21227,109,607 - 27,179,938 (-)NCBI
Rnor_6.01230,740,563 - 30,811,014 (-)NCBI
Rnor_5.01232,675,284 - 32,745,308 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769196   ⟹   XP_008767418
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21227,109,607 - 27,179,940 (-)NCBI
Rnor_6.01230,740,563 - 30,811,014 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769197   ⟹   XP_008767419
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21227,109,607 - 27,179,941 (-)NCBI
Rnor_6.01230,740,563 - 30,811,015 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769199   ⟹   XP_008767421
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21227,109,607 - 27,179,940 (-)NCBI
Rnor_6.01230,740,563 - 30,811,014 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039089423   ⟹   XP_038945351
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21227,109,607 - 27,179,940 (-)NCBI
RefSeq Acc Id: XM_039089425   ⟹   XP_038945353
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21227,109,607 - 27,179,940 (-)NCBI
RefSeq Acc Id: XM_039089426   ⟹   XP_038945354
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21227,109,607 - 27,179,937 (-)NCBI
RefSeq Acc Id: XM_039089427   ⟹   XP_038945355
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21227,109,607 - 27,164,682 (-)NCBI
RefSeq Acc Id: XM_039089428   ⟹   XP_038945356
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21227,109,607 - 27,141,852 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001030096   ⟸   NM_001034924
- UniProtKB: Q3KR71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249335   ⟸   XM_006249273
- Peptide Label: isoform X7
- UniProtKB: A0A1W2Q681 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249332   ⟸   XM_006249270
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006249331   ⟸   XM_006249269
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JZ87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249333   ⟸   XM_006249271
- Peptide Label: isoform X6
- UniProtKB: D3ZTQ1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008767421   ⟸   XM_008769199
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_008767419   ⟸   XM_008769197
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008767418   ⟸   XM_008769196
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000070951   ⟸   ENSRNOT00000077977
RefSeq Acc Id: ENSRNOP00000076147   ⟸   ENSRNOT00000093734
RefSeq Acc Id: ENSRNOP00000076174   ⟸   ENSRNOT00000093237
RefSeq Acc Id: ENSRNOP00000001235   ⟸   ENSRNOT00000001235
RefSeq Acc Id: XP_038945351   ⟸   XM_039089423
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038945353   ⟸   XM_039089425
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038945354   ⟸   XM_039089426
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038945355   ⟸   XM_039089427
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038945356   ⟸   XM_039089428
- Peptide Label: isoform X10
Protein Domains
SURP motif

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698592
Promoter ID:EPDNEW_R9117
Type:multiple initiation site
Name:Sfswap_1
Description:splicing factor SWAP
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01230,810,995 - 30,811,055EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305004 AgrOrtholog
Ensembl Genes ENSRNOG00000000931 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000001235 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000070951 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000076147 UniProtKB/TrEMBL
  ENSRNOP00000076174 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001235 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000077977 UniProtKB/TrEMBL
  ENSRNOT00000093237 UniProtKB/TrEMBL
  ENSRNOT00000093734 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.790 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7321112 IMAGE-MGC_LOAD
  IMAGE:7462407 IMAGE-MGC_LOAD
InterPro Surp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SWAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SWAP/Surp_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SWAP_N_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:304431 UniProtKB/TrEMBL
MGC_CLONE MGC:109465 IMAGE-MGC_LOAD
  MGC:125102 IMAGE-MGC_LOAD
NCBI Gene 304431 ENTREZGENE
PANTHER PTHR13161 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DRY_EERY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Surp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sfswap PhenoGen
PROSITE SURP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART DRY_EERY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SWAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF109905 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JZ87 ENTREZGENE, UniProtKB/TrEMBL
  A0A1W2Q666_RAT UniProtKB/TrEMBL
  A0A1W2Q681 ENTREZGENE, UniProtKB/TrEMBL
  D3ZTQ1 ENTREZGENE
  Q3KR71 ENTREZGENE, UniProtKB/TrEMBL
  SFSWA_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q5BJQ4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-09-28 Sfswap  splicing factor SWAP  Sfswap  splicing factor SWAP homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-05-11 Sfswap  splicing factor SWAP homolog  Sfswap  splicing factor, suppressor of white-apricot homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-03-16 Sfswap  splicing factor, suppressor of white-apricot homolog  Sfswap  splicing factor, suppressor of white-apricot family  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-04-23 Sfswap  splicing factor, suppressor of white-apricot family  Sfswap  splicing factor, suppressor of white-apricot homolog (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-08-01 Sfswap  splicing factor, suppressor of white-apricot homolog (Drosophila)  Sfrs8  splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-22 Sfrs8  splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila)  Srsf8  serine/arginine-rich splicing factor 8   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-13 Srsf8  serine/arginine-rich splicing factor 8   Sfrs8  splicing factor, arginine/serine-rich 8  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Sfrs8  splicing factor, arginine/serine-rich 8  Sfrs8  splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Sfrs8  splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila)  Sfrs8_predicted  splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Sfrs8_predicted  splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila) (predicted)      Symbol and Name status set to approved 70820 APPROVED