Alc6 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Alc6 (Alcohol consumption QTL 6) Rattus norvegicus

Symbol: Alc6
Name: Alcohol consumption QTL 6
RGD ID: 631829
Previously known as: Alcohol preference QTL 6
Trait: consumption behavior trait   (VT:0002069)    
Measurement Type: ethanol drink intake rate   (CMO:0001407)    
LOD Score: 4.7
P Value: Not Available
Variance: 4.0
Inheritance Type: additive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81234,243,475 - 43,352,593RGD_MAPPER_PIPELINE
mRatBN7.21228,607,526 - 37,691,617RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01232,289,782 - 43,305,579RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01234,202,298 - 45,143,158RGDRnor5.0
RGSC_v3.41229,675,888 - 39,018,219RGDRGSC3.4
RGSC_v3.11229,539,264 - 38,881,607RGD
Cross Type: intercross
Strains Crossed: Iusm:HAD1 Iusm:LAD1 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
Iusm:HAD1  (IEA)
Iusm:LAD1  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Analyses of quantitative trait loci contributing to alcohol preference in HAD1/LAD1 and HAD2/LAD2 rats. Carr LG, etal., Alcohol Clin Exp Res 2003 Nov;27(11):1710-7.
2. Identification of quantitative trait loci influencing alcohol consumption in the high alcohol drinking and low alcohol drinking rat lines. Foroud T, etal., Behav Genet 2000 Mar;30(2):131-40.
3. QTLs influencing carbohydrate and fat choice in a LOU/CxFischer 344 F2 rat population. Marissal-Arvy N, etal., Obesity (Silver Spring). 2013 Apr 17. doi: 10.1002/oby.20485.
Related QTLs

Related QTL Description Reference
Alc12 interacts with RGD:731212
Alc10 maps to same region RGD:731212
Foco6 maps to same region RGD:7401255
Alc9 interacts with RGD:731212
Foco19 maps to same region RGD:7401255
Alc11 interacts with RGD:731212
Alc13 interacts with RGD:731212


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
735062Tmem132dtransmembrane protein 132D122827003928917324Rat
1304896Glt1d1glycosyltransferase 1 domain containing 1122897598429049707Rat
708469Slc15a4solute carrier family 15 member 4122904863429082480Rat
1583824Tmem132ctransmembrane protein 132C122911521329437900Rat
11472079LOC108352443uncharacterized LOC108352443122914059329146192Rat
41181629Tmem254-ps1transmembrane protein 254, pseudogene 1122939753429414987Rat
41348602LOC120095946uncharacterized LOC120095946122946757229469165Rat
41154964LOC120096083U2 spliceosomal RNA122946950029469687Rat
1559821Myl6l2myosin light chain 6 like 2122948809129488746Rat
41083776LOC120095947uncharacterized LOC120095947122950898329528608Rat
9386528Rpl7-ps7ribosomal protein L7, pseudogene 7122955463029556108Rat
9188281LOC103691337uncharacterized LOC103691337122964621429652464Rat
41351787LOC120095949uncharacterized LOC120095949122973060929736279Rat
41235196LOC120095951uncharacterized LOC120095951122986393629869460Rat
41366922LOC120095952uncharacterized LOC120095952122988752429899402Rat
11363226LOC108352445uncharacterized LOC108352445122995068830009315Rat
2324513Mrpl23-ps1mitochondrial ribosomal protein L23, pseudogene 1123012462230125050Rat
7668786LOC102549552uncharacterized LOC102549552123014630830148665Rat
41213846LOC120095956uncharacterized LOC120095956123014922730154629Rat
11405284LOC108352488uncharacterized LOC108352488123018629430194578Rat
1592278Frg1-ps1FSHD region gene 1, pseudogene 1123026902130269933Rat
11493793LOC108352502uncharacterized LOC108352502123038801030409963Rat
40974416LOC120095960uncharacterized LOC120095960123068444330713892Rat
1566191Tmem132btransmembrane protein 132B123082983131093841Rat
41202940LOC120095961uncharacterized LOC120095961123099435430996878Rat
708522Aacsacetoacetyl-CoA synthetase123111309831156411Rat
1561711Bri3bpBri3 binding protein123117674231188563Rat
1306837Dhx37DEAH-box helicase 37123119478231214890Rat
11517466Trnaa-ugc3transfer RNA alanine (anticodon UGC) 3123122046331220534Rat
11440418Trnad-guc4transfer RNA aspartic acid (anticodon GUC) 4123122106331221134Rat
11367381Trnaf-gaa4transfer RNA phenylalanine (anticodon GAA) 4123122392631223998Rat
11425977Trnad-guc5transfer RNA aspartic acid (anticodon GUC) 5123122438131224452Rat
11373727Trnaa-ugc4transfer RNA alanine (anticodon UGC) 4123122569831225769Rat
621244Ubcubiquitin C123123914931243924Rat
2302Scarb1scavenger receptor class B, member 1123129614331362649Rat
41213561LOC120095963uncharacterized LOC120095963123136729531370732Rat
1310293Ncor2nuclear receptor co-repressor 2123146641831628319Rat
41017092LOC120095965uncharacterized LOC120095965123152405131528132Rat
1588777Rflnarefilin A123163336031642313Rat
7677226Zfp664zinc finger protein 664123176779231796038Rat
1561886Rpl27l5ribosomal protein L27 like 5123177986031780438Rat
1601131Ccdc92coiled-coil domain containing 92123179610231823333Rat
619988Dnah10dynein, axonemal, heavy chain 10123182345131946857Rat
9133337LOC103691347eukaryotic translation initiation factor 1 pseudogene123191454131914883Rat
41097782LOC120095966uncharacterized LOC120095966123194682131962475Rat
621006Atp6v0a2ATPase H+ transporting V0 subunit a2123194722031979875Rat
1591895Tctn2tectonic family member 2123198244032007242Rat
41257986Trnaa-agc44transfer RNA alanine (anticodon AGC) 44123199897931999059Rat
40970512Timm23-ps1translocase of inner mitochondrial membrane 23, pseudogene 1123200749732008787Rat
1305494Gtf2h3general transcription factor IIH subunit 3123200901032025484Rat
620819Eif2b1eukaryotic translation initiation factor 2B subunit alpha123202559332033848Rat
2324094Ddx55DEAD-box helicase 55123203446232050218Rat
69243Tmed2transmembrane p24 trafficking protein 2123205254232061628Rat
1307973Rilpl1Rab interacting lysosomal protein-like 1123207187032109687Rat
1310724Snrnp35small nuclear ribonucleoprotein U11/U12 subunit 35123211203232119829Rat
1303140Rilpl2Rab interacting lysosomal protein-like 2123212590832137426Rat
1587560Kmt5alysine methyltransferase 5A123213935332167777Rat
1310005Sbno1strawberry notch homolog 1123217517632234200Rat
1308664Cdk2ap1cyclin-dependent kinase 2 associated protein 1123224975232258483Rat
1563482Mtrfrmitochondrial translation release factor in rescue123226156932275258Rat
1598368Mphosph9M-phase phosphoprotein 9123227544932346097Rat
1310867Pitpnm2phosphatidylinositol transfer protein, membrane-associated 2123234745532479103Rat
1307657Arl6ip4ARF like GTPase 6 interacting protein 4123247962332481768Rat
1310594Ogfod22-oxoglutarate and iron-dependent oxygenase domain containing 2123248238632485688Rat
41316137LOC120096094U6 spliceosomal RNA123249059432490697Rat
620254Abcb9ATP binding cassette subfamily B member 9123249921332531932Rat
7543130LOC102552690uncharacterized LOC102552690123253546632560005Rat
1304576Vps37bVPS37B subunit of ESCRT-I123256004732589015Rat
621615Hip1rhuntingtin interacting protein 1 related123259016432618841Rat
1586391Ccdc62coiled-coil domain containing 62123262317032659912Rat
1584200Denrdensity regulated reinitiation and release factor123266251232685283Rat
1586364Hcar1hydroxycarboxylic acid receptor 1123271068032713934Rat
727952Hcar2hydroxycarboxylic acid receptor 2123272625232728238Rat
1307905Kntc1kinetochore associated 1123276902032839617Rat
1564882Rsrc2arginine and serine rich coiled-coil 2123283984032859820Rat
1309774Zcchc8zinc finger CCHC-type containing 8123286917032892707Rat
2323644LOC100359550protein S100-A11-like123290539632905803Rat
67404Clip1CAP-GLY domain containing linker protein 1123291093233017891Rat
41062965LOC120095846uncharacterized LOC120095846123296019532960798Rat
620643Vps33aVPS33A core subunit of CORVET and HOPS complexes123302459633051399Rat
1310885Diablodiablo, IAP-binding mitochondrial protein123305578433070401Rat
1309612B3gnt4UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4123307022133073904Rat
1561461Lrrc43leucine rich repeat containing 43123307414933092257Rat
1585183Il31interleukin 31123309510833105026Rat
1560774MlxipMLX interacting protein123312852433192300Rat
40933635LOC120096088U4 spliceosomal RNA123318341633183497Rat
1585128Bcl7aBAF chromatin remodeling complex subunit BCL7A123321197833243903Rat
41176598LOC120095967uncharacterized LOC120095967123324397233272229Rat
1564948Cfap251cilia and flagella associated protein 251123326162233337028Rat
41115357LOC120095968uncharacterized LOC120095968123332778933331332Rat
621110Psmd9proteasome 26S subunit, non-ATPase 9123333718233357468Rat
7586771LOC102547495uncharacterized LOC102547495123337397433381533Rat
61974Hpd4-hydroxyphenylpyruvate dioxygenase123338139733392750Rat
2323325Setd1bSET domain containing 1B, histone lysine methyltransferase123339596333421671Rat
1584038Rhofras homolog family member F, filopodia associated123342237533446689Rat
1584031Tmem120btransmembrane protein 120B123344744133487257Rat
1583094Rpl32-ps9ribosomal protein L32, pseudogene 9123349625333497041Rat
1583091Morn3MORN repeat containing 3123350565433529918Rat
1311873Orai1ORAI calcium release-activated calcium modulator 1123353315133548361Rat
7710500LOC102546488uncharacterized LOC102546488123354839733557605Rat
7734862Lraplocus regulating alcohol preference123356248233574339Rat
1310217Kdm2blysine demethylase 2B123356653033701366Rat
628636Rnf34ring finger protein 34123370365533724606Rat
40965160LOC120095970uncharacterized LOC120095970123372632133734720Rat
1306125Anapc5anaphase-promoting complex subunit 5123374870933781709Rat
620092Camkk2calcium/calmodulin-dependent protein kinase kinase 2123379102333845000Rat
41129989LOC120096090U4 spliceosomal RNA123381990433820064Rat
41132992LOC120095972uncharacterized LOC120095972123382624933828687Rat
62073P2rx4purinergic receptor P2X 4123384460933862265Rat
1598196Rpl32-ps11ribosomal protein L32, pseudogene 11123387057333873601Rat
3241P2rx7purinergic receptor P2X 7123388970933934168Rat
727862Ift81intraflagellar transport 81123395774434037164Rat
2174Atp2a2ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2123407271034122142Rat
1311927Anapc7anaphase promoting complex subunit 7123413121434160819Rat
2324823Rpl38-ps4ribosomal protein L38, pseudogene 4123414722234147659Rat
1311985Arpc3actin related protein 2/3 complex, subunit 3123417278034186651Rat
11445374LOC108352447uncharacterized LOC108352447123417499234179566Rat
41013557LOC120096106small nucleolar RNA SNORA67123418204634182188Rat
1303034Gpn3GPN-loop GTPase 3123418928534198251Rat
1310861Fam216afamily with sequence similarity 216, member A123419852634207673Rat
1308332Vps29VPS29 retromer complex component123420891134217977Rat
1308223Rad9bRAD9 checkpoint clamp component B123421786834248380Rat
1310383Pptc7protein phosphatase targeting COQ7123424996334288339Rat
11517723LOC108352448uncharacterized LOC108352448123426385534267760Rat
1566266Tctn1tectonic family member 1123430979534347190Rat
1310788Hvcn1hydrogen voltage-gated channel 1123434167334370010Rat
3377Ppp1ccprotein phosphatase 1 catalytic subunit gamma123438307234400553Rat
41376041LOC120095977uncharacterized LOC120095977123440810134424345Rat
1562334Ccdc63coiled-coil domain containing 63123442438834453080Rat
41142854LOC1200960785S ribosomal RNA123444480334444920Rat
1564245Myl2myosin light chain 2123445422334468554Rat
41282935LOC120095979uncharacterized LOC120095979123450251234507096Rat
1305967Cux2cut-like homeobox 2123450772334707581Rat
41239638LOC120095978uncharacterized LOC120095978123461097434614202Rat
1310656Pheta1PH domain containing endocytic trafficking adaptor 1123471183134717601Rat
68411Sh2b3SH2B adaptor protein 3123473193434753617Rat
1306637Atxn2ataxin 2123475413234851175Rat
41120407Fbxo22-ps1F-box protein 22, pseudogene 1123479768734808256Rat
1586551BrapBRCA1 associated protein123487453334901030Rat
1310159Acad10acyl-CoA dehydrogenase family, member 10123490121134943973Rat
69219Aldh2aldehyde dehydrogenase 2 family member123494954934982527Rat
1564113Mapkapk5MAPK activated protein kinase 5123499352035013059Rat
621467Adam1aADAM metallopeptidase domain 1a123501743335020300Rat
1596066Tmem116transmembrane protein 116123502191235089409Rat
2322512Adam1ba disintegrin and metallopeptidase domain 1b123503716135040574Rat
619781Erp29endoplasmic reticulum protein 29123508969835095952Rat
41049657LOC120095847uncharacterized LOC120095847123508986335094145Rat
1305685Naa25N(alpha)-acetyltransferase 25, NatB auxiliary subunit123509825635150498Rat
2320799LOC10036456140S ribosomal protein S27-like123513904935139517Rat
6500917LOC10090991140S ribosomal protein S20-like123515593435156460Rat
620171Trafd1TRAF type zinc finger domain containing 1123516560635179525Rat
1309762Hectd4HECT domain E3 ubiquitin protein ligase 4123518216535330935Rat
619826Rpl6ribosomal protein L6123534749335352011Rat
41368808LOC120096111small nucleolar RNA SNORA42/SNORA80 family123535131235351445Rat
3447Ptpn11protein tyrosine phosphatase, non-receptor type 11123536543635424925Rat
620073Rph3arabphilin 3A123554238935618901Rat
1359379Oas1i2 ' -5 ' oligoadenylate synthetase 1I123562456635636608Rat
1310349Oas1d2'-5' oligoadenylate synthetase 1D123564858335658037Rat
621760Oas1a2'-5' oligoadenylate synthetase 1A123566979835680505Rat
1359732Oas1h2 ' -5 ' oligoadenylate synthetase 1H123568286235695717Rat
1359647Oas1f2 ' -5 ' oligoadenylate synthetase 1F123569702435706617Rat
708393Oas1b2-5 oligoadenylate synthetase 1B123572456135735271Rat
1359611Oas1e2'-5' oligoadenylate synthetase 1E123575035935759304Rat
1359279Oas1k2 ' -5 ' oligoadenylate synthetase 1K123576248335771710Rat
1359319Oas32'-5'-oligoadenylate synthetase 3123577902835802781Rat
1359697Oas22'-5' oligoadenylate synthetase 2123580282435830778Rat
1585380Dtx1deltex E3 ubiquitin ligase 1123584964735880835Rat
1311820Rasal1RAS protein activator like 1123588126935913727Rat
2325045Ndufa1-ps2NADH:ubiquinone oxidoreductase subunit A1, pseudogene 2123592133435921801Rat
1561303Cfap73cilia and flagella associated protein 73123592889235935664Rat
1562539Ddx54DEAD-box helicase 54123593471335949956Rat
1306772Rita1RBPJ interacting and tubulin associated 1123595009035953960Rat
1560757IqcdIQ motif containing D123595552235972420Rat
708494Tpcn1two pore segment channel 1123597281336029632Rat
41057520LOC120095848uncharacterized LOC120095848123597663135983611Rat
1565818Slc8b1solute carrier family 8 member B1123602975936053087Rat
708461Plbd2phospholipase B domain containing 2123606280236081984Rat
67376Sdsserine dehydratase123608322636090540Rat
1309192Sdslserine dehydratase-like123609969336109914Rat
71079Lhx5LIM homeobox 5123612618636134625Rat
41331926LOC120095980uncharacterized LOC120095980123614450336146878Rat
1308928Rbm19RNA binding motif protein 19123636577536451033Rat
41089695LOC1200960195S ribosomal RNA123648270236482820Rat
11380654LOC108352451uncharacterized LOC108352451123659268436623169Rat
41304617LOC120095982uncharacterized LOC120095982123665177436658765Rat
1305702Tbx5T-box transcription factor 5123668634436739253Rat
7627339LOC102549962uncharacterized LOC102549962123673937136740501Rat
735203Tbx3T-box transcription factor 3123687992436894849Rat
40970911LOC120095983uncharacterized LOC120095983123692843436930499Rat
11459514LOC108352453uncharacterized LOC108352453123696484036990681Rat
7530977LOC102551773uncharacterized LOC102551773123703967037045930Rat
41036577LOC120095984uncharacterized LOC120095984123708033137084675Rat
41231540LOC120095986uncharacterized LOC120095986123711584337118001Rat
41111709LOC120095985uncharacterized LOC120095985123713407337144790Rat
40969426LOC120095858uncharacterized LOC120095858123714484237151202Rat
41311154LOC120095859uncharacterized LOC120095859123716943637174115Rat
41074579LOC120095987uncharacterized LOC120095987123762211137627400Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10125DXMgh7230123381916733819400Ratregion
33955D1Mit22124123140994231410080Ratregion
34070D12Mgh7138123569808835698226Ratregion
34389D12Mgh10132123769148537691617Ratregion
11281D12Wox15157123609153336091690Ratregion
11282D12Arb7340123609137936091727Ratregion
36119D12Rat94267122905763229057901Ratregion
36125D12Rat14163122862266528622828Ratregion
37334D12Rat46158123039512130395279Ratregion
37366D12Rat54115123579702135797136Ratregion
35433D12Rat17153123082724630827399Ratregion
37830D12Rat36206123210317432103380Ratregion
36490D12Rat18161123470242634702587Ratregion
36671D12Rat19160123663807336638233Ratregion
36795D12Rat24174123237617132376345Ratregion
35126D12Rat16168123042710330427275Ratregion
39740D12Rat85212123684381936844031Ratregion
38084D12Rat96202123165732831657530Ratregion
38108D12Rat50244123395926833959512Ratregion
40454D12Rat100133123445246134452594Ratregion
40668D12Rat78206123088000030880206Ratregion
38736D12Rat48201123615449136154692Ratregion
40112D12Rat84167123491883334919000Ratregion
39060D12Rat30202123297403632974238Ratregion
39332D12Rat52145123531231335312458Ratregion
41962D12Arb6290123568255935682913Ratregion
41962D12Arb6290123568255935682913Ratregion
41156D12Rat79225123508839935088624Ratregion
42966D12Rat95211122964763529647846Ratregion
42967D12Rat106202123039001530390217Ratregion
42970D12Rat108211123722042737220626Ratregion
42972D12Rat109233123681600736816240Ratregion
42974D12Rat110203123663771836637922Ratregion
42379D12Rat111208123627661136276819Ratregion
40766D12Rat7798123026526230265360Ratregion
41626D12Rat93106122860752628607632Ratregion
41688D12Rat97113123613270336132816Ratregion
41786D12Rat101106123481880234818908Ratregion
41826D12Rat107202123213485232135053Ratregion
44997D12Got78173123356343833563611Ratregion
44998D12Got79153123443701334437166Ratregion
45000D12Got85145123624195836242103Ratregion
45001D12Got70226123042706030427288Ratregion
45003D12Got86160123725815337258313Ratregion
45004D12Got83219123599888435999103Ratregion
45005D12Got88197123730388137304078Ratregion
45006D12Got106102123738661837386722Ratregion
45008D12Got89162123725815137258313Ratregion
45010D12Got92214123707895537079169Ratregion
44991D12Got73271123050685330507124Ratregion
44992D12Got71268123042700230427274Ratregion
44993D12Got72148123025202130252167Ratregion
44995D12Got69184122918041829180602Ratregion
60027D12Got75282123570405535704337Ratregion
60028D12Got8089123528824235288330Ratregion
60029D12Got81192123555536635555558Ratregion
60030D12Got82227123584655535846782Ratregion
60031D12Got99172123091167830911850Ratregion
67357D12Arb16396123608842836088826Ratregion
1629355D12Mco4196123082719930827395Ratregion
1633585D12Wox17177123609151436091691Ratregion
1634462D12Got219139123576158235761721Ratregion
1634514D12Got214178123522520535225385Ratregion
8693306rs8143345123593486635934866Ratregion
8693216rs106542192123365099633650996Ratregion
7206280Ptpn11564123539186935392434Ratregion
5035885PMC280674P1715123188636531887080Ratregion
5038888RH127390196123305100733051203Ratregion
7206382fj36f03.x10122881822228819087Ratregion
7206766ha30420123188460831885786Ratregion
5036817AU049299243123591660635916849Ratregion
5037065D12S2026337123412177934122116Ratregion
5035498AW533080180123525845135258631Ratregion
5033885RH140486172123121453531214707Ratregion
5033941RH140698187123432991534330102Ratregion
5026010RH130563215123133877531338990Ratregion
5028621RH118296196123293523132935427Ratregion
7206126UniSTS:532167946123524989035250836Ratregion
5034159RH141592185123194727731947462Ratregion
5028833RH142503121123434526134345382Ratregion
5031590AU047822281123688274736883028Ratregion
5034199RH141742194123258741032587604Ratregion
5034666BF390887174122898741828987592Ratregion
5029387RH144598150123521857635218726Ratregion
5026898RH133958187123534765135348064Ratregion
5026902RH133976195123418246834182663Ratregion
5032211D84372133123542147635421609Ratregion
5027036RH134486197123200924232009439Ratregion
5035356AW529993150123424817934248329Ratregion
5027301AW544490124123475453834754662Ratregion
5027303AW049835110123420941234209522Ratregion
5030123BE098792203123162805031628253Ratregion
5030179BF395959124123198649931986623Ratregion
5030401BE106118174123614664636146820Ratregion
5030445BE106487158123326166433261822Ratregion
5030479BF403268212123434263234342844Ratregion
5033301RH138330145123393849833938643Ratregion
5030825BE120455158123441077734410935Ratregion
5028257D5Mit118157123420598134206142Ratregion
5025864RH129983150123568035135680501Ratregion
5025864RH129983150123568035135680501Ratregion
5028452AA987064163122908225829082421Ratregion
5031143AA925036117123370096133701078Ratregion
5052075RH94825207123542146435421671Ratregion
5055147RH143632261123266502832665289Ratregion
5051170RH134480188123136236031362548Ratregion
5051170RH134480188123136236031362548Ratregion
5053745RH142826173123213784332138016Ratregion
5054003RH142974126123342967633429802Ratregion
5056877RH144632157123242672032426877Ratregion
5057094AI454805188123575907935759267Ratregion
5059396AW530578166123246621432466380Ratregion
5055597RH143892144123413133334131477Ratregion
5055615RH143903170123424872134248891Ratregion
5054907RH143493136123393000933930145Ratregion
5058592BE102132183122960165729601840Ratregion
5058666BE102291152123245279732452949Ratregion
5056395RH144353115123379317133793286Ratregion
5056977RH144689176123117276731172943Ratregion
5052573RH125644234123205257932052813Ratregion
5058924BF387255151123427724034277391Ratregion
5059022BF387385184123204520432045388Ratregion
5059878BI279065181123203352232033703Ratregion
5059892BF388151181123502006935020250Ratregion
5058324BF41930790123352979933529889Ratregion
5058378BG37680094122876253828762632Ratregion
5059120BI278447161123498229934982460Ratregion
5059232AI137218240123593590435936144Ratregion
5057636BF392370170123243851232438682Ratregion
5050534RH134112168123258881732588985Ratregion
5050706RH134211220123503467235034892Ratregion
5050078RH133849206123301664833016854Ratregion
5050998RH134379214123124532831245542Ratregion
5051397AW554476125123305042433050549Ratregion
5051399AW22870094123312865433128748Ratregion
5054217RH143097179123471470634714885Ratregion
5053173RH142496154123688009136880245Ratregion
5054575RH143303219123284018832840407Ratregion
5044038RH130374192123563623735636429Ratregion
5045148RH131011183123517927135179454Ratregion
5045350RH131127220123433959734339817Ratregion
5045534RH131233196123123484331235039Ratregion
5041500RH128892212123301747033017682Ratregion
5043960RH130330167123420744134207608Ratregion
5045720RH131340211123247889032479101Ratregion
5046122RH131571193123602935836029551Ratregion
5047542RH132387210123384155233841762Ratregion
5047584RH132412182123561865135618833Ratregion
5047584RH132412182123561865135618833Ratregion
5047584RH132412182123574101135741193Ratregion
5047584RH132412182123574101135741193Ratregion
5047852RH132566198123587939335879591Ratregion
5047856RH132568210123588053635880746Ratregion
5045912RH131450194123494334634943540Ratregion
5047040RH132099186123289244332892629Ratregion
5039496RH127739195123225865632258851Ratregion
5041982RH129170640123471187734712517Ratregion
5042060RH129215197123223466332234860Ratregion
5047264RH132227181123234577732345958Ratregion
5041964RH129160198123111310531113303Ratregion
5042216RH129307198123509564035095838Ratregion
5040500RH128319191123370387333704064Ratregion
5042616RH129542194123487457334874767Ratregion
5042714RH129601215123266256132662776Ratregion
5041048RH128633668123509517035095838Ratregion
5041094RH128659184123542467935424863Ratregion
5041176RH128706151123388976133889912Ratregion
5043680RH130165201123434050334340704Ratregion
5043878RH130280183123602980936029992Ratregion
5072734RH137022169123424970834249877Ratregion
5075082RH138388172123416050934160681Ratregion
5075390RH138566123123593745035938536Ratregion
5072420RH136839227122911658229116809Ratregion
5076014RH138929192123248382232484014Ratregion
5076326RH139111134123393000833930142Ratregion
5074698RH138167127123182286831822995Ratregion
5076680RH139316170123258822132588391Ratregion
5074846RH138252198122908339329083591Ratregion
5076124RH138993214123402637634026590Ratregion
5079492RH141029193123339247233392665Ratregion
5076702RH139329466123501246435012930Ratregion
5079586RH141086211123470728134707492Ratregion
5079660RH141130260123608291536083175Ratregion
5077120RH139572218123117162531171843Ratregion
5077368RH139716192123333927433339466Ratregion
5076446RH139180139123321338633213525Ratregion
5078542RH140404143123117162531171768Ratregion
5078598RH14043691123352980433529895Ratregion
5079176RH140780182123266267632662858Ratregion
5073468RH137453207123588145835881665Ratregion
5072872RH137103185123312857633128761Ratregion
5073316RH137366190123384464333844833Ratregion
5073340RH137380150123203450632034656Ratregion
5071904RH135352195123117706231177257Ratregion
5073564RH137509217123476196134762178Ratregion
5073702RH137589196123593478135934977Ratregion
5072194RH136707144123661779436617938Ratregion
5071766RH135272186123564876235648948Ratregion
5061782AW533444153122922127729221430Ratregion
5064982BE108813170123210450332104673Ratregion
5067026AU048009127123029517330295300Ratregion
5067050AU047995216123745548637455670Ratregion
5067050AU047995216123745548637456073Ratregion
5067050AU047995216123745585737456073Ratregion
5067100AU047964210123646851036468718Ratregion
5067470AU047724238123386776033867998Ratregion
5067578AU047661128122919341129193541Ratregion
5067610AU047642165122919340529193572Ratregion
5068860AU046881279123435041334350692Ratregion
5069144AU046697165123709364037093805Ratregion
5069286AU046598180123577181835772000Ratregion
5063564BI289921203123230413432304337Ratregion
5060418BE110007168123170048831700656Ratregion
5060624BE110694158123446102234461180Ratregion
5062286BF403047149123504167135041820Ratregion
5060954BF389547143123014645930146602Ratregion
5062594BE106902162123383902033839182Ratregion
5065922BE116124212122911524129115453Ratregion
5062016BI294736218123272763832727856Ratregion
5062052BI294823189123527998535280174Ratregion
5065460BF412122151123417919934179350Ratregion
5060602BE110564160123194957631949736Ratregion
5062190BF397544204123306576433065968Ratregion
5065702BF406235157122883729128837448Ratregion
5065990BE116442175123383493533835110Ratregion
5066040AA925378207122908971429089921Ratregion
5061114AW532394196123587199135872187Ratregion
5061348BF396285123123339607133396194Ratregion
5063204BF410495116123009374230093861Ratregion
5066450AU048349132123402023234020366Ratregion
5084352AA945300202123509832435098526Ratregion
5086363AA874832191123378147633781667Ratregion
5082383BI274645158123608220136082359Ratregion
5089921AU049443124123663778736637911Ratregion
5088269AU048467127123031755430317681Ratregion
5089401AU049134152123568274335682895Ratregion
5089401AU049134152123568274335682895Ratregion
5083429BI282133202123730824237308444Ratregion
5083619BI276461175123333881633338991Ratregion
5088305AU048490237123127772531277962Ratregion
5089587AU04924498122904332929043427Ratregion
5089613AU049259269122998086329981132Ratregion
5083960AI599956140123595359535953735Ratregion
5090105AU049553203123198992231990125Ratregion
5087171BQ207717197123442993834430135Ratregion
5082125BF409796221123402809734028318Ratregion
5085110AW531792149123583498735835136Ratregion
5090531AU049807197123508392535084125Ratregion
5088717AU048735193122946698329467176Ratregion
5085387BM390241201123216447932164680Ratregion
5085760BM390895181123262837032628551Ratregion
5080714RH141739183122908215229082335Ratregion
5080924RH141862199123194916231949361Ratregion
5083203BI275304166123222969532229861Ratregion
5083203BI275304166123222969532229861Ratregion
5081414AI502108184123425075434250938Ratregion
5081787BE118263156123674030436740460Ratregion
5085736BF388086155123256131532561470Ratregion
5085828BF388170183123522322435223407Ratregion
5504869ha27170123126613931267576Ratregion
5506221Dtx1310123587877635879086Ratregion
5506729G44856274123428446934284743Ratregion
5499633MARC_5817-5818:991939742:3300122948832129488621Ratregion
5499605MARC_2373-2374:991932707:1334123475445034755580Ratregion
5499837UniSTS:234929717123285697132857688Ratregion
5502733RSRC2168123285696632857134Ratregion
5500847G15902192123411886734119059Ratregion
5500408GDB:45513084123338655033386634Ratregion
5503644UniSTS:4654521480123587852035880000Ratregion
5501922MARC_17487-17488:1030377680:10123478863334790159Ratregion
5502313RH124405211123339714833397359Ratregion
5502345RH124557175123205257232052747Ratregion
Position Markers

Flank 1: (D12Rat93)
Rat AssemblyChrPosition (strand)Source
GRCr81234,243,475 - 34,243,581 (+)Marker Load Pipeline
mRatBN7.21228,607,526 - 28,607,632 (+)MAPPER
Rnor_6.01232,289,782 - 32,289,887NCBI
Rnor_5.01234,202,298 - 34,202,403UniSTS
RGSC_v3.41229,675,889 - 29,675,994UniSTS
RGSC_v3.41229,675,888 - 29,675,994RGD
RGSC_v3.11229,539,264 - 29,539,445RGD
Celera1230,300,214 - 30,300,319UniSTS
SHRSP x BN Map1233.01UniSTS
SHRSP x BN Map1233.01RGD
Cytogenetic Map12q14UniSTS
Peak: (D12Rat18)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21234,702,426 - 34,702,587 (+)MAPPER
Rnor_6.01240,215,912 - 40,216,072NCBI
Rnor_5.01242,086,869 - 42,087,029UniSTS
RGSC_v3.41235,907,119 - 35,907,279UniSTS
RGSC_v3.41235,907,118 - 35,907,279RGD
RGSC_v3.11235,770,507 - 35,770,667RGD
Celera1236,367,985 - 36,368,141UniSTS
RH 3.4 Map12618.7RGD
RH 3.4 Map12618.7UniSTS
RH 2.0 Map12465.7RGD
FHH x ACI Map1235.52RGD
Cytogenetic Map12q16UniSTS
Flank 2: (D12Mgh10)
Rat AssemblyChrPosition (strand)Source
GRCr81243,352,461 - 43,352,593 (+)Marker Load Pipeline
mRatBN7.21237,691,485 - 37,691,617 (+)MAPPER
Rnor_6.01243,305,448 - 43,305,579NCBI
Rnor_5.01245,143,027 - 45,143,158UniSTS
RGSC_v3.41239,018,087 - 39,018,219RGD
RGSC_v3.41239,018,088 - 39,018,219UniSTS
RGSC_v3.11238,881,476 - 38,881,607RGD
Celera1239,353,994 - 39,354,125UniSTS
RH 3.4 Map12702.5RGD
RH 3.4 Map12702.5UniSTS
RH 2.0 Map12485.4RGD
Cytogenetic Map12 RGD


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122308134044726024Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122413920236638073Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)122806443346669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
1556747Calcic1Intracellular calcium level QTL 13.6platelet calcium amount (VT:0010500)platelet intracellular calcium level (CMO:0000922)122806443340130419Rat
631829Alc6Alcohol consumption QTL 64.7consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)122860752637691617Rat
8693658Alc33Alcohol consumption QTL 332.10.68drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122308134043551788Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)122423477731894213Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961088935682913Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121983578938193007Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123210317445899022Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)122806443345899022Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)122806455740218380Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121363552330827399Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12136247923Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Alc6


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-14 Alc6  Alcohol consumption QTL 6    Alcohol preference QTL 6  Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general significant sex-specific QTL linkage: LOD = 5.0 for male samples as compared to the LOD = 1.6 in female 631230
qtl_general crossing of replicate lines HAD2 x LAD2 showed no evidence of QTL in this region 724636