Rilpl1 (Rab interacting lysosomal protein-like 1) - Rat Genome Database

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Gene: Rilpl1 (Rab interacting lysosomal protein-like 1) Rattus norvegicus
Analyze
Symbol: Rilpl1
Name: Rab interacting lysosomal protein-like 1
RGD ID: 1307973
Description: Predicted to enable dynein light intermediate chain binding activity and small GTPase binding activity. Involved in nitric oxide mediated signal transduction. Located in cytosol. Human ortholog(s) of this gene implicated in oculopharyngodistal myopathy 4. Orthologous to human RILPL1 (Rab interacting lysosomal protein like 1); INTERACTS WITH 1,3-dinitrobenzene; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GAPDH's competitor of SIAH1 protein enhances life; GOSPEL; LOC304469; rab-interacting lysosomal-like protein 1; RGD1307973; RILP-like protein 1; similar to 2900002H16Rik protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81237,732,847 - 37,770,659 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1237,732,629 - 37,770,660 (+)EnsemblGRCr8
mRatBN7.21232,071,870 - 32,109,687 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,071,693 - 32,109,938 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1233,251,120 - 33,288,498 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01233,862,444 - 33,899,829 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01232,914,317 - 32,951,695 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01237,490,320 - 37,528,393 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1237,490,584 - 37,528,784 (+)Ensemblrn6Rnor6.0
Rnor_5.01239,361,146 - 39,398,925 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41233,184,828 - 33,222,135 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1233,762,143 - 33,799,830 (+)NCBICelera
RGSC_v3.11233,047,947 - 33,085,523 (+)NCBI
Cytogenetic Map12q15NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cell projection  (IEA)
centriole  (IEA)
centrosome  (IEA,ISO,ISS)
ciliary basal body  (IBA,IEA,ISO)
cilium  (IEA,ISO,ISS)
cytoplasm  (IBA,IEA)
cytoskeleton  (IEA)
cytosol  (IDA,IEA,ISO)
membrane  (IEA)
nucleoplasm  (IEA,ISO)
plasma membrane  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. GOSPEL: a neuroprotective protein that binds to GAPDH upon S-nitrosylation. Sen N, etal., Neuron. 2009 Jul 16;63(1):81-91. doi: 10.1016/j.neuron.2009.05.024.
Additional References at PubMed
PMID:23264467   PMID:31505169  


Genomics

Comparative Map Data
Rilpl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81237,732,847 - 37,770,659 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1237,732,629 - 37,770,660 (+)EnsemblGRCr8
mRatBN7.21232,071,870 - 32,109,687 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,071,693 - 32,109,938 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1233,251,120 - 33,288,498 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01233,862,444 - 33,899,829 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01232,914,317 - 32,951,695 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01237,490,320 - 37,528,393 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1237,490,584 - 37,528,784 (+)Ensemblrn6Rnor6.0
Rnor_5.01239,361,146 - 39,398,925 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41233,184,828 - 33,222,135 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1233,762,143 - 33,799,830 (+)NCBICelera
RGSC_v3.11233,047,947 - 33,085,523 (+)NCBI
Cytogenetic Map12q15NCBI
RILPL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812123,470,054 - 123,533,719 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12123,470,054 - 123,533,719 (-)Ensemblhg38GRCh38
GRCh3712123,954,601 - 124,018,266 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612122,522,316 - 122,584,453 (-)NCBIBuild 36Build 36hg18NCBI36
Celera12123,551,811 - 123,614,423 (-)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12120,917,360 - 120,979,268 (-)NCBIHuRef
CHM1_112123,828,994 - 123,839,251 (-)NCBICHM1_1
T2T-CHM13v2.012123,468,958 - 123,532,572 (-)NCBIT2T-CHM13v2.0
Rilpl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,631,143 - 124,669,684 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5124,631,143 - 124,669,454 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm385124,493,080 - 124,531,441 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5124,493,080 - 124,531,391 (-)Ensemblmm10GRCm38
MGSCv375124,943,089 - 124,981,400 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365122,594,267 - 122,632,547 (-)NCBIMGSCv36mm8
MGSCv365124,753,698 - 124,792,009 (-)NCBIMGSCv36mm8
Celera5121,566,419 - 121,607,564 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.62NCBI
Rilpl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554825,424,898 - 5,458,632 (+)Ensembl
ChiLan1.0NW_0049554825,424,898 - 5,455,145 (+)NCBIChiLan1.0ChiLan1.0
RILPL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210131,555,037 - 131,618,077 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112131,551,415 - 131,614,454 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012121,065,508 - 121,128,512 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112125,295,534 - 125,356,076 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12125,295,534 - 125,356,076 (-)EnsemblpanPan2panpan1.1
RILPL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1266,073,377 - 6,118,438 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl266,073,077 - 6,117,333 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha266,235,934 - 6,281,462 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0266,323,190 - 6,368,712 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl266,323,209 - 6,367,589 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,256,649 - 6,302,161 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0266,349,205 - 6,394,933 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0266,302,212 - 6,347,743 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rilpl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118158,185,029 - 158,218,317 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365581,261,103 - 1,296,606 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365581,261,103 - 1,294,397 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RILPL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1429,424,115 - 29,476,220 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11429,424,120 - 29,470,679 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21431,116,518 - 31,163,344 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RILPL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111118,805,389 - 118,865,804 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11118,804,226 - 118,865,669 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037126,415,890 - 126,476,979 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rilpl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474723,335,503 - 23,364,902 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474723,335,134 - 23,364,541 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Rilpl1
324 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:96
Count of miRNA genes:71
Interacting mature miRNAs:85
Transcripts:ENSRNOT00000001401
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122480502252308831Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771850386405Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122598935552308831Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123776414551558799Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122977552242298555Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)123370043246784661Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121746497946784661Rat
1556747Calcic1Intracellular calcium level QTL 13.6platelet calcium amount (VT:0010500)platelet intracellular calcium level (CMO:0000922)123370043246784661Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)123370043251558799Rat
631829Alc6Alcohol consumption QTL 64.7consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)123424347543352593Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
8693658Alc33Alcohol consumption QTL 332.10.68drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771849212240Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)122963663737764351Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat

Markers in Region
D12Rat36  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81237,764,145 - 37,764,351 (+)Marker Load Pipeline
mRatBN7.21232,103,174 - 32,103,380 (+)MAPPERmRatBN7.2
Rnor_6.01237,521,884 - 37,522,089NCBIRnor6.0
Rnor_5.01239,392,710 - 39,392,915UniSTSRnor5.0
RGSC_v3.41233,216,127 - 33,216,334RGDRGSC3.4
RGSC_v3.41233,216,128 - 33,216,333UniSTSRGSC3.4
Celera1233,793,327 - 33,793,532UniSTS
RGSC_v3.11233,079,515 - 33,079,722RGD
RH 3.4 Map12555.2UniSTS
RH 3.4 Map12555.2RGD
RH 2.0 Map12430.4RGD
SHRSP x BN Map1242.1399RGD
Cytogenetic Map12q15UniSTS
BE108813  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21232,104,503 - 32,104,673 (+)MAPPERmRatBN7.2
Rnor_6.01237,523,213 - 37,523,382NCBIRnor6.0
Rnor_5.01239,394,039 - 39,394,208UniSTSRnor5.0
RGSC_v3.41233,217,457 - 33,217,626UniSTSRGSC3.4
Celera1233,794,656 - 33,794,825UniSTS
RH 3.4 Map12547.0UniSTS
Cytogenetic Map12q15UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 81 59 6 345 181 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000001401   ⟹   ENSRNOP00000001401
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1237,732,660 - 37,770,658 (+)Ensembl
mRatBN7.2 Ensembl1232,071,823 - 32,109,686 (+)Ensembl
Rnor_6.0 Ensembl1237,490,584 - 37,528,393 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000090831   ⟹   ENSRNOP00000072380
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1237,732,646 - 37,770,657 (+)Ensembl
mRatBN7.2 Ensembl1232,071,693 - 32,109,938 (+)Ensembl
Rnor_6.0 Ensembl1237,490,700 - 37,528,784 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098666   ⟹   ENSRNOP00000082089
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,071,693 - 32,103,123 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099078   ⟹   ENSRNOP00000087559
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1237,732,629 - 37,770,660 (+)Ensembl
mRatBN7.2 Ensembl1232,072,045 - 32,109,689 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115532   ⟹   ENSRNOP00000082699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1237,732,652 - 37,770,658 (+)Ensembl
mRatBN7.2 Ensembl1232,071,693 - 32,109,780 (+)Ensembl
RefSeq Acc Id: NM_001191665   ⟹   NP_001178594
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,732,847 - 37,770,659 (+)NCBI
mRatBN7.21232,071,870 - 32,109,687 (+)NCBI
Rnor_6.01237,490,584 - 37,528,393 (+)NCBI
Rnor_5.01239,361,146 - 39,398,925 (+)NCBI
Celera1233,762,143 - 33,799,830 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249294   ⟹   XP_006249356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,733,021 - 37,770,659 (+)NCBI
mRatBN7.21232,071,958 - 32,109,687 (+)NCBI
Rnor_6.01237,490,320 - 37,528,393 (+)NCBI
Rnor_5.01239,361,146 - 39,398,925 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249295   ⟹   XP_006249357
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,733,021 - 37,770,053 (+)NCBI
mRatBN7.21232,071,958 - 32,109,082 (+)NCBI
Rnor_6.01237,490,320 - 37,527,734 (+)NCBI
Rnor_5.01239,361,146 - 39,398,925 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249296   ⟹   XP_006249358
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,733,021 - 37,770,659 (+)NCBI
mRatBN7.21232,071,958 - 32,109,687 (+)NCBI
Rnor_6.01237,490,320 - 37,528,393 (+)NCBI
Rnor_5.01239,361,146 - 39,398,925 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039089435   ⟹   XP_038945363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,733,021 - 37,770,050 (+)NCBI
mRatBN7.21232,071,958 - 32,109,076 (+)NCBI
RefSeq Acc Id: XM_039089436   ⟹   XP_038945364
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,733,021 - 37,770,050 (+)NCBI
mRatBN7.21232,071,958 - 32,109,076 (+)NCBI
RefSeq Acc Id: XM_039089437   ⟹   XP_038945365
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,733,021 - 37,770,026 (+)NCBI
mRatBN7.21232,071,958 - 32,108,997 (+)NCBI
RefSeq Acc Id: XM_039089438   ⟹   XP_038945366
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,733,021 - 37,770,026 (+)NCBI
mRatBN7.21232,071,958 - 32,108,997 (+)NCBI
RefSeq Acc Id: XM_039089439   ⟹   XP_038945367
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,733,021 - 37,770,050 (+)NCBI
mRatBN7.21232,071,958 - 32,109,076 (+)NCBI
RefSeq Acc Id: NP_001178594   ⟸   NM_001191665
- UniProtKB: D3ZUQ0 (UniProtKB/Swiss-Prot),   A0A8L2PZW4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249358   ⟸   XM_006249296
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZUH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249356   ⟸   XM_006249294
- Peptide Label: isoform X1
- UniProtKB: A6J0Z1 (UniProtKB/TrEMBL),   A0A8L2PZW4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249357   ⟸   XM_006249295
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZUH1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072380   ⟸   ENSRNOT00000090831
Ensembl Acc Id: ENSRNOP00000001401   ⟸   ENSRNOT00000001401
RefSeq Acc Id: XP_038945363   ⟸   XM_039089435
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZUH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945364   ⟸   XM_039089436
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZUH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945367   ⟸   XM_039089439
- Peptide Label: isoform X8
- UniProtKB: A0A8I5ZUH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945365   ⟸   XM_039089437
- Peptide Label: isoform X6
- UniProtKB: A0A0G2K2U5 (UniProtKB/TrEMBL),   A0A8I5ZUH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945366   ⟸   XM_039089438
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZUH1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000082699   ⟸   ENSRNOT00000115532
Ensembl Acc Id: ENSRNOP00000082089   ⟸   ENSRNOT00000098666
Ensembl Acc Id: ENSRNOP00000087559   ⟸   ENSRNOT00000099078
Protein Domains
RH1   RH2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZUQ0-F1-model_v2 AlphaFold D3ZUQ0 1-406 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698613
Promoter ID:EPDNEW_R9135
Type:single initiation site
Name:Rilpl1_1
Description:Rab interacting lysosomal protein-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01237,490,738 - 37,490,798EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307973 AgrOrtholog
BioCyc Gene G2FUF-19357 BioCyc
Ensembl Genes ENSRNOG00000001055 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000001401 ENTREZGENE
  ENSRNOT00000090831 ENTREZGENE
  ENSRNOT00000099078 ENTREZGENE
  ENSRNOT00000115532 ENTREZGENE
Gene3D-CATH 1.20.58.1770 UniProtKB/Swiss-Prot
  6.10.230.10 UniProtKB/Swiss-Prot
InterPro DZIP_RILPL UniProtKB/Swiss-Prot
  RH1 UniProtKB/Swiss-Prot
  RH2 UniProtKB/Swiss-Prot
  RILP_dimer UniProtKB/Swiss-Prot
KEGG Report rno:304469 UniProtKB/Swiss-Prot
NCBI Gene 304469 ENTREZGENE
PANTHER RILP-LIKE PROTEIN 1 UniProtKB/Swiss-Prot
  ZINC FINGER PROTEIN DZIP1 UniProtKB/Swiss-Prot
Pfam Jnk-SapK_ap_N UniProtKB/Swiss-Prot
  RILP UniProtKB/Swiss-Prot
PhenoGen Rilpl1 PhenoGen
PROSITE RH1 UniProtKB/Swiss-Prot
  RH2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000001055 RatGTEx
Superfamily-SCOP RILP dimerisation region UniProtKB/Swiss-Prot
UniProt A0A0G2K2U5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZUH1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZVF2_RAT UniProtKB/TrEMBL
  A0A8I6A875_RAT UniProtKB/TrEMBL
  A0A8L2PZW4 ENTREZGENE, UniProtKB/TrEMBL
  A6J0Z1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZUQ0 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-25 Rilpl1  Rab interacting lysosomal protein-like 1  RGD1307973_predicted  similar to 2900002H16Rik protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1307973_predicted  similar to 2900002H16Rik protein (predicted)  LOC304469_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC304469_predicted  similar to 2900002H16Rik protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL