Polr2j (RNA polymerase II subunit J) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Polr2j (RNA polymerase II subunit J) Rattus norvegicus
Analyze
Symbol: Polr2j
Name: RNA polymerase II subunit J
RGD ID: 1310198
Description: Predicted to enable LRR domain binding activity. Predicted to contribute to RNA polymerase II activity. Predicted to be involved in transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II, core complex. Orthologous to several human genes including POLR2J (RNA polymerase II subunit J); PARTICIPATES IN RNA polymerase II transcription pathway; Huntington's disease pathway; purine metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DNA-directed RNA polymerase II subunit RPB11-a; LOC288588; polymerase (RNA) II (DNA directed) polypeptide J; polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa; polymerase (RNA) II subunit J
RGD Orthologs
Human
Mouse
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21220,543,038 - 20,548,590 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1220,543,038 - 20,548,594 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1221,683,016 - 21,688,571 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01222,295,721 - 22,301,276 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01221,361,193 - 21,366,748 (-)NCBIRnor_WKY
Rnor_6.01223,587,222 - 23,592,774 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1223,587,222 - 23,592,774 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01225,587,572 - 25,593,124 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41221,658,406 - 21,663,958 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11221,649,381 - 21,654,560 (-)NCBI
Celera1222,311,433 - 22,316,972 (-)NCBICelera
Cytogenetic Map12q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. TFIIB-related factors in RNA polymerase I transcription. Knutson BA and Hahn S, Biochim Biophys Acta. 2013 Mar-Apr;1829(3-4):265-73. doi: 10.1016/j.bbagrm.2012.08.003. Epub 2012 Aug 30.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:9099876   PMID:9268387   PMID:9852112   PMID:10783144   PMID:16141233  


Genomics

Comparative Map Data
Polr2j
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21220,543,038 - 20,548,590 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1220,543,038 - 20,548,594 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1221,683,016 - 21,688,571 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01222,295,721 - 22,301,276 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01221,361,193 - 21,366,748 (-)NCBIRnor_WKY
Rnor_6.01223,587,222 - 23,592,774 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1223,587,222 - 23,592,774 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01225,587,572 - 25,593,124 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41221,658,406 - 21,663,958 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11221,649,381 - 21,654,560 (-)NCBI
Celera1222,311,433 - 22,316,972 (-)NCBICelera
Cytogenetic Map12q12NCBI
POLR2J
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387102,473,128 - 102,478,922 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl7102,473,128 - 102,478,922 (-)EnsemblGRCh38hg38GRCh38
GRCh377102,113,575 - 102,119,369 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367101,900,552 - 101,906,386 (-)NCBINCBI36Build 36hg18NCBI36
Build 347101,707,623 - 101,713,077NCBI
Celera797,125,817 - 97,127,251 (-)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef796,703,776 - 96,705,210 (-)NCBIHuRef
CHM1_17102,043,567 - 102,049,407 (-)NCBICHM1_1
T2T-CHM13v2.07103,790,727 - 103,796,531 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27101,473,848 - 101,479,682 (-)NCBI
Polr2j
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395136,145,545 - 136,151,801 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5136,145,485 - 136,151,801 (+)EnsemblGRCm39 Ensembl
GRCm385136,116,691 - 136,122,947 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5136,116,631 - 136,122,947 (+)EnsemblGRCm38mm10GRCm38
MGSCv375136,592,561 - 136,598,817 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365136,401,364 - 136,407,566 (+)NCBIMGSCv36mm8
Celera5133,137,045 - 133,143,301 (+)NCBICelera
Cytogenetic Map5G2NCBI
Polr2j
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545615,146,713 - 15,151,320 (+)NCBIChiLan1.0ChiLan1.0
POLR2J
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.167,707,426 - 7,710,882 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha69,402,443 - 9,405,898 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.067,527,599 - 7,531,054 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl67,527,645 - 7,531,266 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.167,496,109 - 7,499,564 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.067,459,175 - 7,462,631 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.067,622,887 - 7,626,343 (+)NCBIUU_Cfam_GSD_1.0
Polr2j
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344132,136,578 - 132,140,703 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365431,895,827 - 1,899,918 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLR2J
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl39,812,441 - 9,816,656 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.139,812,746 - 9,816,657 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.239,695,498 - 9,699,407 (+)NCBISscrofa10.2Sscrofa10.2susScr3
POLR2J
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12810,742,636 - 10,748,084 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660705,660,475 - 5,666,066 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Polr2j
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474015,169,459 - 15,173,805 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474015,169,414 - 15,174,212 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Polr2j
8 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:150
Count of miRNA genes:113
Interacting mature miRNAs:122
Transcripts:ENSRNOT00000001941
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121107382524234895Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382528064557Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121363552330827399Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
61443Btemp2Thermal response to stress QTL 23.30.000094body temperature trait (VT:0005535)core body temperature (CMO:0001036)121502518320794014Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)121961087024139202Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961088935682913Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121983578938193007Rat
631521Pia12Pristane induced arthritis QTL 128.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)122025941723672083Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat

Markers in Region
RH132174  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,542,702 - 20,543,016 (+)MAPPERmRatBN7.2
Rnor_6.01223,586,887 - 23,587,200NCBIRnor6.0
Rnor_5.01225,587,237 - 25,587,550UniSTSRnor5.0
RGSC_v3.41221,658,071 - 21,658,384UniSTSRGSC3.4
Celera1222,311,098 - 22,311,411UniSTS
RH 3.4 Map12298.11UniSTS
Cytogenetic Map12q12UniSTS
RH134388  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,543,314 - 20,544,059 (+)MAPPERmRatBN7.2
Rnor_6.01223,587,499 - 23,588,243NCBIRnor6.0
Rnor_5.01225,587,849 - 25,588,593UniSTSRnor5.0
RGSC_v3.41221,658,683 - 21,659,427UniSTSRGSC3.4
Celera1222,311,710 - 22,312,454UniSTS
RH 3.4 Map12300.5UniSTS
Cytogenetic Map12q12UniSTS
GDB:4585697  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,545,862 - 20,545,946 (+)MAPPERmRatBN7.2
Rnor_6.01223,590,047 - 23,590,130NCBIRnor6.0
Rnor_5.01225,590,397 - 25,590,480UniSTSRnor5.0
RGSC_v3.41221,661,231 - 21,661,314UniSTSRGSC3.4
Celera1222,314,258 - 22,314,341UniSTS
Cytogenetic Map12q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000001941   ⟹   ENSRNOP00000001941
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1220,543,038 - 20,548,590 (-)Ensembl
Rnor_6.0 Ensembl1223,587,222 - 23,592,774 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000098210   ⟹   ENSRNOP00000097097
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1220,543,198 - 20,548,594 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116070   ⟹   ENSRNOP00000096502
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1220,543,038 - 20,548,538 (-)Ensembl
RefSeq Acc Id: NM_001105921   ⟹   NP_001099391
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21220,543,038 - 20,548,590 (-)NCBI
Rnor_6.01223,587,222 - 23,592,774 (-)NCBI
Rnor_5.01225,587,572 - 25,593,124 (-)NCBI
RGSC_v3.41221,658,406 - 21,663,958 (-)RGD
Celera1222,311,433 - 22,316,972 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001099391 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM13324 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001099391   ⟸   NM_001105921
- UniProtKB: D3ZQI0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000001941   ⟸   ENSRNOT00000001941
RefSeq Acc Id: ENSRNOP00000097097   ⟸   ENSRNOT00000098210
RefSeq Acc Id: ENSRNOP00000096502   ⟸   ENSRNOT00000116070
Protein Domains
RNA_pol_L_2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZQI0-F1-model_v2 AlphaFold D3ZQI0 1-117 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698541
Promoter ID:EPDNEW_R9064
Type:initiation region
Name:Polr2j_1
Description:RNA polymerase II subunit J
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01223,592,749 - 23,592,809EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310198 AgrOrtholog
BioCyc Gene G2FUF-19653 BioCyc
Ensembl Genes ENSRNOG00000001430 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000001941 ENTREZGENE
  ENSRNOP00000001941.3 UniProtKB/TrEMBL
  ENSRNOP00000096502.1 UniProtKB/TrEMBL
  ENSRNOP00000097097.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001941 ENTREZGENE
  ENSRNOT00000001941.4 UniProtKB/TrEMBL
  ENSRNOT00000098210.1 UniProtKB/TrEMBL
  ENSRNOT00000116070.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1360.10 UniProtKB/TrEMBL
InterPro DNA-dir_RNA_pol_RBP11-like UniProtKB/TrEMBL
  RBP11 UniProtKB/TrEMBL
  RBP11-like UniProtKB/TrEMBL
  RNA_pol_Rpb11_13-16kDa_CS UniProtKB/TrEMBL
KEGG Report rno:288588 UniProtKB/TrEMBL
NCBI Gene 288588 ENTREZGENE
Pfam RNA_pol_L_2 UniProtKB/TrEMBL
PhenoGen Polr2j PhenoGen
PROSITE RNA_POL_L_13KD UniProtKB/TrEMBL
Superfamily-SCOP RNAP_RBP11-like UniProtKB/TrEMBL
UniProt A0A8I6B4A8_RAT UniProtKB/TrEMBL
  A0A8I6GMD7_RAT UniProtKB/TrEMBL
  D3ZQI0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-21 Polr2j  RNA polymerase II subunit J  Polr2j  polymerase (RNA) II subunit J  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-03-16 Polr2j  polymerase (RNA) II subunit J  Polr2j  polymerase (RNA) II (DNA directed) polypeptide J  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-10-22 Polr2j  polymerase (RNA) II (DNA directed) polypeptide J  Polr2j  polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-24 Polr2j  polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa  Polr2j  polymerase (RNA) II (DNA directed) polypeptide J   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Polr2j  polymerase (RNA) II (DNA directed) polypeptide J   Polr2j_predicted  polymerase (RNA) II (DNA directed) polypeptide J (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Polr2j_predicted  polymerase (RNA) II (DNA directed) polypeptide J (predicted)      Symbol and Name status set to approved 70820 APPROVED