Trim56 (tripartite motif containing 56) - Rat Genome Database

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Gene: Trim56 (tripartite motif containing 56) Rattus norvegicus
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Symbol: Trim56
Name: tripartite motif containing 56
RGD ID: 40958426
Description: ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN defense response to virus (ortholog); innate immune response (ortholog); negative regulation of viral entry into host cell (ortholog); ASSOCIATED WITH Plasminogen Activator Inhibitor-1 Deficiency (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytoplasm (ortholog); INTERACTS WITH 1,2-dichloroethane (ortholog); 2,3,7,8-tetrachlorodibenzodioxine (ortholog); benzo[a]pyrene (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: E3 ubiquitin-protein ligase TRIM56
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21219,544,913 - 19,567,324 (+)NCBI


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
Trim56
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21219,544,913 - 19,567,324 (+)NCBI
TRIM56
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl7101,085,481 - 101,097,967 (+)EnsemblGRCh38hg38GRCh38
GRCh387101,085,424 - 101,097,967 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh377100,728,762 - 100,741,248 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367100,515,506 - 100,520,629 (+)NCBINCBI36hg18NCBI36
Build 347100,322,220 - 100,327,322NCBI
Celera795,736,929 - 95,742,103 (+)NCBI
Cytogenetic Map7q22.1NCBI
HuRef795,322,038 - 95,327,161 (+)NCBIHuRef
CHM1_17100,659,113 - 100,664,213 (+)NCBICHM1_1
CRA_TCAGchr7v27100,087,175 - 100,092,298 (+)NCBI
Trim56
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395137,140,140 - 137,145,313 (-)NCBIGRCm39mm39
GRCm39 Ensembl5137,134,498 - 137,145,063 (-)Ensembl
GRCm385137,111,286 - 137,116,462 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5137,105,644 - 137,116,209 (-)EnsemblGRCm38mm10GRCm38
MGSCv375137,587,156 - 137,592,077 (-)NCBIGRCm37mm9NCBIm37
MGSCv365137,395,913 - 137,400,834 (-)NCBImm8
Celera5134,128,782 - 134,133,656 (-)NCBICelera
Cytogenetic Map5G2NCBI
Trim56
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545616,182,453 - 16,184,669 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545616,181,890 - 16,185,598 (-)NCBIChiLan1.0ChiLan1.0
TRIM56
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17106,467,469 - 106,473,566 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7106,469,474 - 106,471,741 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0793,225,830 - 93,231,127 (+)NCBIMhudiblu_PPA_v0panPan3
TRIM56
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.168,744,970 - 8,752,896 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl68,749,438 - 8,751,753 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha610,442,309 - 10,450,432 (-)NCBI
ROS_Cfam_1.068,564,002 - 8,572,131 (-)NCBI
UMICH_Zoey_3.168,524,312 - 8,532,432 (-)NCBI
UNSW_CanFamBas_1.068,494,757 - 8,502,884 (-)NCBI
UU_Cfam_GSD_1.068,659,509 - 8,667,631 (-)NCBI
Trim56
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344133,024,856 - 133,029,353 (-)NCBI
SpeTri2.0NW_0049365431,007,253 - 1,016,374 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM56
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl38,834,143 - 8,839,415 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.138,834,260 - 8,842,524 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TRIM56
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12812,093,927 - 12,099,490 (-)NCBI
ChlSab1.1 Ensembl2812,095,421 - 12,097,688 (-)Ensembl
Vero_WHO_p1.0NW_0236660704,255,604 - 4,260,896 (+)NCBI
Trim56
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474016,154,441 - 16,163,057 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_039090065   ⟹   XP_038945993
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21219,556,499 - 19,567,324 (+)NCBI
RefSeq Acc Id: XM_039090067   ⟹   XP_038945995
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21219,556,499 - 19,567,324 (+)NCBI
RefSeq Acc Id: XM_039090068   ⟹   XP_038945996
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21219,557,090 - 19,567,324 (+)NCBI
RefSeq Acc Id: XM_039090069   ⟹   XP_038945997
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21219,544,913 - 19,567,324 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038945993 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945995 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945996 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945997 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_038945997   ⟸   XM_039090069
RefSeq Acc Id: XP_038945995   ⟸   XM_039090067
RefSeq Acc Id: XP_038945993   ⟸   XM_039090065
RefSeq Acc Id: XP_038945996   ⟸   XM_039090068


Additional Information

Database Acc Id Source(s)
NCBI Gene Trim56 ENTREZGENE
PhenoGen Trim56 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-26 Trim56  tripartite motif containing 56      Symbol and Name status set to provisional 70820 PROVISIONAL