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Gene: Gal3st4 (galactose-3-O-sulfotransferase 4) Rattus norvegicus

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Symbol:

Gal3st4

Name:

galactose-3-O-sulfotransferase 4

RGD ID:

1561105

Description:

Predicted to enable galactose 3-O-sulfotransferase activity. Predicted to be involved in glycolipid biosynthetic process. Predicted to act upstream of or within glycoprotein biosynthetic process. Predicted to be located in membrane. Orthologous to human GAL3ST4 (galactose-3-O-sulfotransferase 4); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 6-propyl-2-thiouracil; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC498166; RGD1561105; similar to galactose-3-O-sulfotransferase 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GAL3ST4 (galactose-3-O-sulfotransferase 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Gal3st4 (galactose-3-O-sulfotransferase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gal3st4 (galactose-3-O-sulfotransferase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GAL3ST4 (galactose-3-O-sulfotransferase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GAL3ST4 (galactose-3-O-sulfotransferase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gal3st4 (galactose-3-O-sulfotransferase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GAL3ST4 (galactose-3-O-sulfotransferase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GAL3ST4 (galactose-3-O-sulfotransferase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gal3st4 (galactose-3-O-sulfotransferase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	AKAP17A (A-kinase anchoring protein 17A)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	GAL3ST4 (galactose-3-O-sulfotransferase 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Gal3st4 (galactose-3-O-sulfotransferase 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gal3st4 (galactose-3-O-sulfotransferase 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gal3st4.1	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector)
Xenopus tropicalis (tropical clawed frog):	gal3st4.4	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector)
Xenopus tropicalis (tropical clawed frog):	gal3st4.6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	22,381,576 - 22,390,566 (-)	NCBI		GRCr8
mRatBN7.2	12	17,267,963 - 17,276,951 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	17,267,963 - 17,276,833 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	18,235,492 - 18,244,000 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	18,859,215 - 18,867,722 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	17,912,627 - 17,921,139 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	19,583,110 - 19,592,444 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	19,583,110 - 19,592,000 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	21,639,959 - 21,648,725 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	17,848,556 - 17,857,313 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	12	19,192,623 - 19,201,295 (-)	NCBI		Celera
Cytogenetic Map	12	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

pleomorphic xanthoastrocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

calcitriol (ISO)

CGP 52608 (ISO)

doxorubicin (ISO)

fulvestrant (ISO)

lipopolysaccharide (ISO)

N-methyl-4-phenylpyridinium (EXP)

nickel sulfate (ISO)

paracetamol (ISO)

resveratrol (ISO)

rotenone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sulfadimethoxine (EXP)

sulindac sulfide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

glycolipid biosynthetic process (IEA)

glycoprotein biosynthetic process (ISO)

Cellular Component

Golgi membrane (IEA)

membrane (ISO)

Molecular Function

galactose 3-O-sulfotransferase activity (IBA,ISO)

galactosylceramide sulfotransferase activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11333265	PMID:19199708

Genomics

Comparative Map Data

Gal3st4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	22,381,576 - 22,390,566 (-)	NCBI		GRCr8
mRatBN7.2	12	17,267,963 - 17,276,951 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	17,267,963 - 17,276,833 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	18,235,492 - 18,244,000 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	18,859,215 - 18,867,722 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	17,912,627 - 17,921,139 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	19,583,110 - 19,592,444 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	19,583,110 - 19,592,000 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	21,639,959 - 21,648,725 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	17,848,556 - 17,857,313 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	12	19,192,623 - 19,201,295 (-)	NCBI		Celera
Cytogenetic Map	12	q11	NCBI

GAL3ST4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	100,159,244 - 100,168,617 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	100,159,244 - 100,168,617 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	99,756,867 - 99,766,240 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	99,594,801 - 99,604,309 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	99,401,518 - 99,410,867	NCBI
Celera	7	94,492,209 - 94,501,719 (-)	NCBI		Celera
Cytogenetic Map	7	q22.1	NCBI
HuRef	7	94,391,755 - 94,401,167 (-)	NCBI		HuRef
CHM1_1	7	99,686,992 - 99,696,447 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	101,399,037 - 101,408,410 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	99,116,951 - 99,126,460 (-)	NCBI

Gal3st4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	138,263,180 - 138,271,261 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	138,263,183 - 138,271,102 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	138,264,918 - 138,273,057 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	138,264,921 - 138,272,840 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	138,706,153 - 138,713,982 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	138,494,713 - 138,502,542 (-)	NCBI		MGSCv36	mm8
Celera	5	135,247,777 - 135,255,605 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	77.0	NCBI

Gal3st4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955573	637,805 - 645,072 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955573	637,921 - 644,723 (+)	NCBI	ChiLan1.0	ChiLan1.0

GAL3ST4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	118,078,178 - 118,088,383 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	166,342,810 - 166,353,015 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	92,194,003 - 92,203,853 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	105,626,713 - 105,636,202 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	105,626,713 - 105,636,202 (-)	Ensembl	panpan1.1		panPan2

GAL3ST4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	9,361,856 - 9,367,781 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	9,361,940 - 9,367,795 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	11,065,846 - 11,071,767 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	9,295,534 - 9,301,455 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	9,295,244 - 9,301,451 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	9,147,990 - 9,153,939 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	9,127,052 - 9,133,001 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	9,308,137 - 9,314,064 (+)	NCBI		UU_Cfam_GSD_1.0

Gal3st4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	133,613,465 - 133,619,503 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936543	417,034 - 423,037 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936543	417,034 - 423,017 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GAL3ST4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	8,162,912 - 8,168,637 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	8,162,909 - 8,168,810 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	7,353,390 - 7,359,172 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GAL3ST4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	12,901,665 - 12,909,916 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	12,901,585 - 12,909,645 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666070	3,370,517 - 3,380,668 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gal3st4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624740	16,741,482 - 16,748,050 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	244
Count of miRNA genes:	164
Interacting mature miRNAs:	189
Transcripts:	ENSRNOT00000001855
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312418	Kidm41	Kidney mass QTL 41	3.7	0.0001	kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	12	5921918	25247790	Rat
61443	Btemp2	Thermal response to stress QTL 2	3.3	0.000094	body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	12	20139028	26430640	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
2306789	Ean6	Experimental allergic neuritis QTL 6	4.9		nervous system integrity trait (VT:0010566)	experimental autoimmune neuritis severity score (CMO:0001528)	12	1	29775522	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1331739	Hrtrt14	Heart rate QTL 14	3.56232		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	12	1	38687564	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	18473041	52308831	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15264248	52308831	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	1	33700600	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	1	38635130	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	28133365	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	12233000	30490641	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	17464979	46784661	Rat
1300174	Bw15	Body weight QTL 15	2.93		body mass (VT:0001259)	body weight loss (CMO:0001399)	12	1	28606299	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	16187438	52308831	Rat
1331787	Rf41	Renal function QTL 41	2.998		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	12	1	33700556	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	16135029	52308831	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	51213550	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
61416	Pia4	Pristane induced arthritis QTL 4	8.4		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	12	18749469	36488809	Rat
7204484	Bp358	Blood pressure QTL 358		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	1	24849755	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
61421	Cia12	Collagen induced arthritis QTL 12	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	18749469	34312613	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	18473041	52308831	Rat
2303568	Bw88	Body weight QTL 88	3		body mass (VT:0001259)	body weight (CMO:0000012)	12	1	28606299	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	16135029	52308831	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	7901625	33938215	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
1331755	Bp219	Blood pressure QTL 219	3.041		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	33700556	Rat

Markers in Region

AW533576

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	17,268,016 - 17,268,171 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	19,583,164 - 19,583,318	NCBI	Rnor6.0
Rnor_5.0	12	21,640,013 - 21,640,167	UniSTS	Rnor5.0
RGSC_v3.4	12	17,848,610 - 17,848,764	UniSTS	RGSC3.4
Celera	12	19,192,677 - 19,192,831	UniSTS
RH 3.4 Map	12	253.3	UniSTS
Cytogenetic Map	12	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	84	83	52	25	52	6	211	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001855 ⟹ ENSRNOP00000001855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	17,267,963 - 17,276,833 (-)	Ensembl
Rnor_6.0 Ensembl	12	19,583,110 - 19,592,000 (-)	Ensembl

RefSeq Acc Id:

NM_001109064 ⟹ NP_001102534

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	22,381,576 - 22,390,448 (-)	NCBI
mRatBN7.2	12	17,267,963 - 17,276,833 (-)	NCBI
Rnor_6.0	12	19,583,110 - 19,592,000 (-)	NCBI
Rnor_5.0	12	21,639,959 - 21,648,725 (-)	NCBI
RGSC_v3.4	12	17,848,556 - 17,857,313 (-)	RGD
Celera	12	19,192,623 - 19,201,295 (-)	RGD

Sequence:

show sequence

GGTGAGTGCCTAGGGAAGCTGGGTCTGGAACCAGTGGAGGGACCTTTGAATTTCTGGAAGGTGA
CTGGAGGGGTCCACAGAAGACCCTTAACAAGGGGCCGGAGACAGATGCAGCACTCACCAACGCC
GAAGAGGGAGAGCTGGGATGAGGGTGTTGAGAGGAGCTCGAGGTGGATGGGAAGAAATCGAGTT
TAGCTCGGGATAGGGAAACGCTGACAGAGGCAAAAATCTGCTAACTCAGGGGGCAGACTCAACA
AGGGCTTCGAGGAGGCCTGGGAAATGATCCCCTGATCTTCAAAGGGTGCCTTCCACGGCTGGAC
TGCCATCTCCAGCTCTCTCTGCCACCCATGGCTCTTGGCCCTGGCTCTGGCCCTCTTTAATGTC
ACTTCTCTTGTGATACATGGGCCCTCTGTCTCCTGCCAGGACCATGAGGCTCTGGAGGCCTCGT
AGCCTGGGGGTGGCTCTGGGAGTCTTCATGACCATCGGATTTGGCCTTCAGTTCTTGGGGGGAT
CATTCCAGAGGAGGCTACCTGGACTGCAGTTCCGACAGTCCTGGATCCCTTCACTGGGACCAAC
TGTTAAGTCTTGCCTACCCCGACAGCGACTTGTATTCCTGAAGACACACAAATCTGGGAGCAGC
TCTGTACTCAATCTCCTTCATCGCTACGGGGACCAGCAAGGGCTACGTTTTGCCCTGCCTGCCC
ACTACCAGTTTGGCTACCCAAAGCTTTTCCAGGCCTCTAAGGTCAAAGGCTACCATCCTCAGAG
TTCGGATACCCAGAAGCCTTTCCATATCCTCTGTCATCACATGAGATTCAACCTCAAAGAGGTA
CTTCAGGTCATGCCTTCTGATAGCTTCTTCTTTTCCATTGTCCGAGATCCAGCGGCTCTAGCTC
GCTCTGCCTTCTCCTATTACAAATCAGCTTCATCGGCTTTCCGAAAGGCACCATCTTTGGCCGC
CTTCCTGTCCAACCCTCGAGCCTTCTACAGACCCGGGGCCCGAGGCAACCATTATGCCCGTAAC
CTACTATGGTTCGACTTTGGTTTGCCCTTCCCCCCAGAGACAAAGACCATGAGAGTGAGTCCCC
ATCTACCCAGAGACCCCAAATCCCTCCAGCTACATATTGTACCTTCTGGTGCTAGTCCTGGAAC
TCTCTTCCGACCTATTACCACAGCTGCCGATAGTTACAAGCAGCCAGCCAGTCTTGCCTCCTCA
GATTTTGGGCCCTCATCCTTTATTCAGTGGGGTCTGGCCTGGTTGGACTCGGTCTTTGACCTGG
TGATGGTGGCTGAGTACTTTGATGAGTCATTGGTTCTGTTGGCAGATGCCCTGTGCTGGAGTCT
GGATGATGTGGTGGGCTTCATGCACAATGCCCAGGCTGGAAGTGAGCAGAGTATTCTCAGTACT
GCCAATAAGACTGTGGCGACTGGTGAGGATCAGCAGCTGACCAAACAGGCCCGAGCTTGGAATA
ACCTAGACTGGGCTCTTTATATCCACTTCAACCGTAGTCTGTGGGCACGGATAGAACAATATGG
CCGGAGTCGACTGCAACGTGCTGTGGCTGAGCTCCGGGCTCGAAGAGAAGCTCTGGCTAGGCGT
TGCCTGATGGGCGGTGAGGCTTTAGACCCCAAATACATCACTGATGTAAGACTCCGTCCTTTCC
AGTTTGGATCAGCTAAGGTATTGGGCTATGTACTTCAGAATGGACTGAACCAGAAAGACCAAGA
GGAATGTGAACGCTTGGCTACCCCTGAGCTACAGTATAAGGATAAACTTGACGCTAAGCAGTTT
CCTCCTGTAGTCTCCTTGCCTCTCAAGACCTCAAAGCCACTGACCCCATAGGTATTGACTACAA
ATTAGGACACATACAAAGGGTGGAAGACCTCTAGATGCCTCTCCATTTCCCTCGGAAGGAACGT
AAGTTTGCTCTAAGGGGAGACTGGCGTTGTCTGGACTTCCTGTAGGAATCCCAGCAGCATCTGC
CCCTTCCCCCAACCCCTAACTTTGCCTCTTCAAGCCTCAAGACAGATTCATGTAGCAGTTCCCC
AAAGCCCCCTGGAGGGGCAAAAGATGAGAGTGACACAGAGTGTTTTGGGCATGACAAATGTCCA
CGTCTCTACGAAATATTAGTTGTGGAGCTGTGTTGATTTCACTGTAAAAGTATTTGTTGGATGA
ATAAATGCTATGAAACATTTACTTATTTTTT

hide sequence

RefSeq Acc Id:

XM_006249025 ⟹ XP_006249087

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	22,381,586 - 22,390,566 (-)	NCBI
mRatBN7.2	12	17,267,973 - 17,276,951 (-)	NCBI
Rnor_6.0	12	19,583,120 - 19,592,444 (-)	NCBI
Rnor_5.0	12	21,639,959 - 21,648,725 (-)	NCBI

Sequence:

show sequence

ATGTGCAGAACACCAGGCCTACTTAGATTAACACGCCACTGCTCCTGCCTTCGGGGTAAGGGCT
GCTCTTCTTGGCAGCCTCTCTGTTTCTCTTTTCAGTCTCTTCACCTGAATAAATCTCTTGTTTT
GTGGAAAGCCGAAAGAAAAAGATGTAATTGATTCCTACTTGAAAGGAGGGTAGAAGTGGCATCT
CTCAAAGGCAGTCTAGGCCATCTTTCCCCAGCGGAGACTGGTAAAGGGACAGGGAGAGGAGAGA
CCCAGAGAGACCATCAATGCCCAAGCTAGCAAGTAAGCGGCTGTTTGGGCTGGCGGGACAAAGG
GAGGGGAGGGGGAGGAGTCTGGGTGCTGAGAAAAGTTTGTAGGGCTAGTTGATCGGCGGAGCTG
AGGAGCCGGGCGGAGGCTGAGGAGCCTGACCTGGTTTTTCGACTGCTCTCCTTATGGCCTGACG
CTGACAGAGGCAAAAATCTGCTAACTCAGGGGGCAGACTCAACAAGGGCTTCGAGGAGGCCTGG
GAAATGATCCCCTGATCTTCAAAGGGTGCCTTCCACGGCTGGACTGCCATCTCCAGCTCTCTCT
GCCACCCATGGCTCTTGGCCCTGGCTCTGGCCCTCTTTAATGTCACTTCTCTTGTGATACATGG
GCCCTCTGTCTCCTGCCAGGACCATGAGGCTCTGGAGGCCTCGTAGCCTGGGGGTGGCTCTGGG
AGTCTTCATGACCATCGGATTTGGCCTTCAGTTCTTGGGGGGATCATTCCAGAGGAGGCTACCT
GGACTGCAGTTCCGACAGTCCTGGATCCCTTCACTGGGACCAACTGTTAAGTCTTGCCTACCCC
GACAGCGACTTGTATTCCTGAAGACACACAAATCTGGGAGCAGCTCTGTACTCAATCTCCTTCA
TCGCTACGGGGACCAGCAAGGGCTACGTTTTGCCCTGCCTGCCCACTACCAGTTTGGCTACCCA
AAGCTTTTCCAGGCCTCTAAGGTCAAAGGCTACCATCCTCAGAGTTCGGATACCCAGAAGCCTT
TCCATATCCTCTGTCATCACATGAGATTCAACCTCAAAGAGGTACTTCAGGTCATGCCTTCTGA
TAGCTTCTTCTTTTCCATTGTCCGAGATCCAGCGGCTCTAGCTCGCTCTGCCTTCTCCTATTAC
AAATCAGCTTCATCGGCTTTCCGAAAGGCACCATCTTTGGCCGCCTTCCTGTCCAACCCTCGAG
CCTTCTACAGACCCGGGGCCCGAGGCAACCATTATGCCCGTAACCTACTATGGTTCGACTTTGG
TTTGCCCTTCCCCCCAGAGACAAAGACCATGAGAGTGAGTCCCCATCTACCCAGAGACCCCAAA
TCCCTCCAGCTACATATTGTACCTTCTGGTGCTAGTCCTGGAACTCTCTTCCGACCTATTACCA
CAGCTGCCGATAGTTACAAGCAGCCAGCCAGTCTTGCCTCCTCAGATTTTGGGCCCTCATCCTT
TATTCAGTGGGGTCTGGCCTGGTTGGACTCGGTCTTTGACCTGGTGATGGTGGCTGAGTACTTT
GATGAGTCATTGGTTCTGTTGGCAGATGCCCTGTGCTGGAGTCTGGATGATGTGGTGGGCTTCA
TGCACAATGCCCAGGCTGGAAGTGAGCAGAGTATTCTCAGTACTGCCAATAAGACTGTGGCGAC
TGGTGAGGATCAGCAGCTGACCAAACAGGCCCGAGCTTGGAATAACCTAGACTGGGCTCTTTAT
ATCCACTTCAACCGTAGTCTGTGGGCACGGATAGAACAATATGGCCGGAGTCGACTGCAACGTG
CTGTGGCTGAGCTCCGGGCTCGAAGAGAAGCTCTGGCTAGGCGTTGCCTGATGGGCGGTGAGGC
TTTAGACCCCAAATACATCACTGATGTAAGACTCCGTCCTTTCCAGTTTGGATCAGCTAAGGTA
TTGGGCTATGTACTTCAGAATGGACTGAACCAGAAAGACCAAGAGGAATGTGAACGCTTGGCTA
CCCCTGAGCTACAGTATAAGGATAAACTTGACGCTAAGCAGTTTCCTCCTGTAGTCTCCTTGCC
TCTCAAGACCTCAAAGCCACTGACCCCATAGGTATTGACTACAAATTAGGACACATACAAAGGG
TGGAAGACCTCTAGATGCCTCTCCATTTCCCTCGGAAGGAACGTAAGTTTGCTCTAAGGGGAGA
CTGGCGTTGTCTGGACTTCCTGTAGGAATCCCAGCAGCATCTGCCCCTTCCCCCAACCCCTAAC
TTTGCCTCTTCAAGCCTCAAGACAGATTCATGTAGCAGTTCCCCAAAGCCCCCTGGAGGGGCAA
AAGATGAGAGTGACACAGAGTGTTTTGGGCATGACAAATGTCCACGTCTCTACGAAATATTAGT
TGTGGAGCTGTGTTGATTTCACTGTAAAAGTATTTGTTGGATGAATAAATGCTATGAAACATTT
A

hide sequence

RefSeq Acc Id:

XM_006249026 ⟹ XP_006249088

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	22,381,586 - 22,390,549 (-)	NCBI
mRatBN7.2	12	17,267,973 - 17,276,937 (-)	NCBI
Rnor_6.0	12	19,583,120 - 19,592,444 (-)	NCBI
Rnor_5.0	12	21,639,959 - 21,648,725 (-)	NCBI

Sequence:

show sequence

ATGTGCAGAACACCAGGCCTACTTAGATTAACACGCCACTGCTCCTGCCTTCGGGGTAAGGGCT
GCTCTTCTTGGCAGCCTCTCTGTTTCTCTTTTCAGTCTCTTCACCTGAATAAATCTCTTGTTTT
GTGGAAAGCCGAAAGAAAAAGATGTAATTGATTCCTACTTGAAAGGAGGGTAGAAGTGGCATCT
CTCAAAGGCAGTCTAGGCCATCTTTCCCCAGCGGAGACTGGTAAAGGGACAGGGAGAGGAGAGA
CCCAGAGAGACCATCAATGCCCAAGCTAGCAAGTAAGCGGCTGTTTGGGCTGGCGGGACAAAGG
GAGGGGAGGGGGAGGAGTCTGGGTGCTGAGAAAAGTTTGTAGGGCTAGTTGATCGGCGGAGCTG
AGGAGCCGGGCGGAGGCTGAGGAGCCTGACCTGGTTTTTCGACTGCTCTCCTTATGGCCTGGAC
CATGAGGCTCTGGAGGCCTCGTAGCCTGGGGGTGGCTCTGGGAGTCTTCATGACCATCGGATTT
GGCCTTCAGTTCTTGGGGGGATCATTCCAGAGGAGGCTACCTGGACTGCAGTTCCGACAGTCCT
GGATCCCTTCACTGGGACCAACTGTTAAGTCTTGCCTACCCCGACAGCGACTTGTATTCCTGAA
GACACACAAATCTGGGAGCAGCTCTGTACTCAATCTCCTTCATCGCTACGGGGACCAGCAAGGG
CTACGTTTTGCCCTGCCTGCCCACTACCAGTTTGGCTACCCAAAGCTTTTCCAGGCCTCTAAGG
TCAAAGGCTACCATCCTCAGAGTTCGGATACCCAGAAGCCTTTCCATATCCTCTGTCATCACAT
GAGATTCAACCTCAAAGAGGTACTTCAGGTCATGCCTTCTGATAGCTTCTTCTTTTCCATTGTC
CGAGATCCAGCGGCTCTAGCTCGCTCTGCCTTCTCCTATTACAAATCAGCTTCATCGGCTTTCC
GAAAGGCACCATCTTTGGCCGCCTTCCTGTCCAACCCTCGAGCCTTCTACAGACCCGGGGCCCG
AGGCAACCATTATGCCCGTAACCTACTATGGTTCGACTTTGGTTTGCCCTTCCCCCCAGAGACA
AAGACCATGAGAGTGAGTCCCCATCTACCCAGAGACCCCAAATCCCTCCAGCTACATATTGTAC
CTTCTGGTGCTAGTCCTGGAACTCTCTTCCGACCTATTACCACAGCTGCCGATAGTTACAAGCA
GCCAGCCAGTCTTGCCTCCTCAGATTTTGGGCCCTCATCCTTTATTCAGTGGGGTCTGGCCTGG
TTGGACTCGGTCTTTGACCTGGTGATGGTGGCTGAGTACTTTGATGAGTCATTGGTTCTGTTGG
CAGATGCCCTGTGCTGGAGTCTGGATGATGTGGTGGGCTTCATGCACAATGCCCAGGCTGGAAG
TGAGCAGAGTATTCTCAGTACTGCCAATAAGACTGTGGCGACTGGTGAGGATCAGCAGCTGACC
AAACAGGCCCGAGCTTGGAATAACCTAGACTGGGCTCTTTATATCCACTTCAACCGTAGTCTGT
GGGCACGGATAGAACAATATGGCCGGAGTCGACTGCAACGTGCTGTGGCTGAGCTCCGGGCTCG
AAGAGAAGCTCTGGCTAGGCGTTGCCTGATGGGCGGTGAGGCTTTAGACCCCAAATACATCACT
GATGTAAGACTCCGTCCTTTCCAGTTTGGATCAGCTAAGGTATTGGGCTATGTACTTCAGAATG
GACTGAACCAGAAAGACCAAGAGGAATGTGAACGCTTGGCTACCCCTGAGCTACAGTATAAGGA
TAAACTTGACGCTAAGCAGTTTCCTCCTGTAGTCTCCTTGCCTCTCAAGACCTCAAAGCCACTG
ACCCCATAGGTATTGACTACAAATTAGGACACATACAAAGGGTGGAAGACCTCTAGATGCCTCT
CCATTTCCCTCGGAAGGAACGTAAGTTTGCTCTAAGGGGAGACTGGCGTTGTCTGGACTTCCTG
TAGGAATCCCAGCAGCATCTGCCCCTTCCCCCAACCCCTAACTTTGCCTCTTCAAGCCTCAAGA
CAGATTCATGTAGCAGTTCCCCAAAGCCCCCTGGAGGGGCAAAAGATGAGAGTGACACAGAGTG
TTTTGGGCATGACAAATGTCCACGTCTCTACGAAATATTAGTTGTGGAGCTGTGTTGATTTCAC
TGTAAAAGTATTTGTTGGATGAATAAATGCTATGAAACATTTA

hide sequence

RefSeq Acc Id:

XM_039089698 ⟹ XP_038945626

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	22,381,586 - 22,388,533 (-)	NCBI
mRatBN7.2	12	17,267,973 - 17,274,917 (-)	NCBI

RefSeq Acc Id:

XM_039089699 ⟹ XP_038945627

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	22,381,586 - 22,390,566 (-)	NCBI
mRatBN7.2	12	17,268,707 - 17,276,951 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102534	(Get FASTA)	NCBI Sequence Viewer
	XP_006249087	(Get FASTA)	NCBI Sequence Viewer
	XP_006249088	(Get FASTA)	NCBI Sequence Viewer
	XP_038945626	(Get FASTA)	NCBI Sequence Viewer
	XP_038945627	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL83909	(Get FASTA)	NCBI Sequence Viewer
	EDL83910	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001855.5

RefSeq Acc Id:

NP_001102534 ⟸ NM_001109064

- UniProtKB:

D3ZHZ0 (UniProtKB/TrEMBL), A6KSU3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGPLSPARTMRLWRPRSLGVALGVFMTIGFGLQFLGGSFQRRLPGLQFRQSWIPSLGPTVKSCL
PRQRLVFLKTHKSGSSSVLNLLHRYGDQQGLRFALPAHYQFGYPKLFQASKVKGYHPQSSDTQK
PFHILCHHMRFNLKEVLQVMPSDSFFFSIVRDPAALARSAFSYYKSASSAFRKAPSLAAFLSNP
RAFYRPGARGNHYARNLLWFDFGLPFPPETKTMRVSPHLPRDPKSLQLHIVPSGASPGTLFRPI
TTAADSYKQPASLASSDFGPSSFIQWGLAWLDSVFDLVMVAEYFDESLVLLADALCWSLDDVVG
FMHNAQAGSEQSILSTANKTVATGEDQQLTKQARAWNNLDWALYIHFNRSLWARIEQYGRSRLQ
RAVAELRARREALARRCLMGGEALDPKYITDVRLRPFQFGSAKVLGYVLQNGLNQKDQEECERL
ATPELQYKDKLDAKQFPPVVSLPLKTSKPLTP

hide sequence

RefSeq Acc Id:

XP_006249088 ⟸ XM_006249026

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAWTMRLWRPRSLGVALGVFMTIGFGLQFLGGSFQRRLPGLQFRQSWIPSLGPTVKSCLPRQRL
VFLKTHKSGSSSVLNLLHRYGDQQGLRFALPAHYQFGYPKLFQASKVKGYHPQSSDTQKPFHIL
CHHMRFNLKEVLQVMPSDSFFFSIVRDPAALARSAFSYYKSASSAFRKAPSLAAFLSNPRAFYR
PGARGNHYARNLLWFDFGLPFPPETKTMRVSPHLPRDPKSLQLHIVPSGASPGTLFRPITTAAD
SYKQPASLASSDFGPSSFIQWGLAWLDSVFDLVMVAEYFDESLVLLADALCWSLDDVVGFMHNA
QAGSEQSILSTANKTVATGEDQQLTKQARAWNNLDWALYIHFNRSLWARIEQYGRSRLQRAVAE
LRARREALARRCLMGGEALDPKYITDVRLRPFQFGSAKVLGYVLQNGLNQKDQEECERLATPEL
QYKDKLDAKQFPPVVSLPLKTSKPLTP

hide sequence

RefSeq Acc Id:	XP_006249087 ⟸ XM_006249025
- Peptide Label:	isoform X1
- UniProtKB:	D3ZHZ0 (UniProtKB/TrEMBL), A6KSU3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGPLSPARTMRLWRPRSLGVALGVFMTIGFGLQFLGGSFQRRLPGLQFRQSWIPSLGPTVKSCL PRQRLVFLKTHKSGSSSVLNLLHRYGDQQGLRFALPAHYQFGYPKLFQASKVKGYHPQSSDTQK PFHILCHHMRFNLKEVLQVMPSDSFFFSIVRDPAALARSAFSYYKSASSAFRKAPSLAAFLSNP RAFYRPGARGNHYARNLLWFDFGLPFPPETKTMRVSPHLPRDPKSLQLHIVPSGASPGTLFRPI TTAADSYKQPASLASSDFGPSSFIQWGLAWLDSVFDLVMVAEYFDESLVLLADALCWSLDDVVG FMHNAQAGSEQSILSTANKTVATGEDQQLTKQARAWNNLDWALYIHFNRSLWARIEQYGRSRLQ RAVAELRARREALARRCLMGGEALDPKYITDVRLRPFQFGSAKVLGYVLQNGLNQKDQEECERL ATPELQYKDKLDAKQFPPVVSLPLKTSKPLTP hide sequence

Ensembl Acc Id:

ENSRNOP00000001855 ⟸ ENSRNOT00000001855

RefSeq Acc Id:	XP_038945626 ⟸ XM_039089698
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038945627 ⟸ XM_039089699
- Peptide Label:	isoform X4

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZHZ0-F1-model_v2	AlphaFold	D3ZHZ0	1-480	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698501

Promoter ID:

EPDNEW_R9026

Type:

multiple initiation site

Name:

Gal3st4_1

Description:

galactose-3-O-sulfotransferase 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	19,592,078 - 19,592,138	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561105	AgrOrtholog
BioCyc Gene	G2FUF-19775	BioCyc
Ensembl Genes	ENSRNOG00000001375	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000001855.6	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	Gal-3-0_sulfotransfrase	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
KEGG Report	rno:498166	UniProtKB/TrEMBL
NCBI Gene	498166	ENTREZGENE
PANTHER	Gal-3-0_sulfotr	UniProtKB/TrEMBL
	GALACTOSE-3-O-SULFOTRANSFERASE 4	UniProtKB/TrEMBL
Pfam	Gal-3-0_sulfotr	UniProtKB/TrEMBL
PhenoGen	Gal3st4	PhenoGen
RatGTEx	ENSRNOG00000001375	RatGTEx
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A6KSU3	ENTREZGENE, UniProtKB/TrEMBL
	D3ZHZ0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-28	Gal3st4	galactose-3-O-sulfotransferase 4	RGD1561105_predicted	similar to galactose-3-O-sulfotransferase 4 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1561105_predicted	similar to galactose-3-O-sulfotransferase 4 (predicted)	LOC498166	similar to galactose-3-O-sulfotransferase 4	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC498166	similar to galactose-3-O-sulfotransferase 4			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar