Mcs30 QTL Report (Rattus norvegicus) - Rat Genome Database
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QTL: Mcs30 (Mammary carcinoma susceptibility QTL 30) Rattus norvegicus

Symbol: Mcs30
Name: Mammary carcinoma susceptibility QTL 30
RGD ID: 7243862
Trait: mammary gland integrity trait   (VT:0010552)    
Measurement Type: mammary tumor number   (CMO:0000343)    
LOD Score: 8.62
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0121,258,139 - 10,257,059RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0121,236,564 - 12,361,764RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4121,581,198 - 3,438,700RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: COP/OlaHsd F344/NHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Fry is a candidate Gene for Mcs30

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
COP/OlaHsd  (IEA)
F344/NHsd  (IEA)

References


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1564816Stard13StAR-related lipid transfer domain containing 131210234941418919Rat
9273010LOC103690812uncharacterized LOC1036908121212927251379483Rat
9196163LOC103693611uncharacterized LOC1036936111213295741331753Rat
7733180LOC102549089uncharacterized LOC1025490891213454651355021Rat
1306832Rfc3replication factor C subunit 31214605811471344Rat
1626010Vom2r-ps97vomeronasal 2 receptor, pseudogene 971214790181479422Rat
9099863LOC103693612uncharacterized LOC1036936121214866651504425Rat
7657613LOC102554571uncharacterized LOC1025545711214875001492831Rat
3581Rn5s5S RNA1215103981510517Rat
2917Insrinsulin receptor1216825271816414Rat
9087166LOC103690844uncharacterized LOC1036908441217861341786583Rat
9390411LOC103693624transmembrane protein 40-like1218464721851961Rat
1311448Arhgef18Rho/Rac guanine nucleotide exchange factor 181218892521998128Rat
1307070Pex11gperoxisomal biogenesis factor 11 gamma1220004262007516Rat
1563425Tex45testis expressed 451220160352033140Rat
1310416Zfp358zinc finger protein 3581220464722050565Rat
1308953Mcoln1mucolipin TRP cation channel 11220546292068682Rat
1564611Pnpla6patatin-like phospholipase domain containing 61220687492098139Rat
1597412Camsap3calmodulin regulated spectrin-associated protein family, member 31221339352157403Rat
621217Xab2XPA binding protein 21221583912170397Rat
1585222Pet100PET100 cytochrome c oxidase chaperone1221706302173259Rat
1306217Pcp2Purkinje cell protein 21221723782174674Rat
9327255LOC103690858uncharacterized LOC1036908581221772702180036Rat
619967Stxbp2syntaxin binding protein 21221801012191863Rat
628781Retnresistin1222019092203649Rat
1565374Mcemp1mast cell-expressed membrane protein 11222119702217005Rat
1563971Trappc5trafficking protein particle complex 51222286702232973Rat
619997Fcer2Fc fragment of IgE receptor II1222337722245324Rat
7644403LOC102557178uncharacterized LOC1025571781222642652278137Rat
1597482Clec4gC-type lectin domain family 4, member G1222736492278594Rat
1308239Cd209aCD209a antigen1223419602347543Rat
1563333Cd209eCD209e molecule1223813782387960Rat
1561104Cd209CD209 molecule1224068792413324Rat
1305530Ccl25C-C motif chemokine ligand 251224294922438928Rat
7721017LOC102552452uncharacterized LOC1025524521224527362458184Rat
1308649Elavl1ELAV like RNA binding protein 11224615022502432Rat
3864Timm44translocase of inner mitochondrial membrane 441225170062533707Rat
2449Ctxn1cortexin 11225342122535823Rat
1304589Snapc2small nuclear RNA activating complex, polypeptide 21225372912540774Rat
1586419Tgfbr3ltransforming growth factor beta receptor 3 like1225404942545315Rat
1560043Map2k7mitogen activated protein kinase kinase 71225462782555310Rat
1311979Lrrc8eleucine rich repeat containing 8 VRAC subunit E1225572672568416Rat
1566084Prr36proline rich 361225791542586126Rat
1561962Evi5lecotropic viral integration site 5-like1225880662626336Rat
9311972LOC103690865uncharacterized LOC1036908651226274502656683Rat
1585258Cd209fCD209f antigen1226584742661622Rat
1585245LOC688763similar to NFKB inhibitor interacting Ras-like protein 21226732192716250Rat
2324825LOC100363064rCG58956-like1227162942719334Rat
1585219LOC688789hypothetical protein LOC6887891227474182748347Rat
1564571RGD1564571similar to DC-SIGN1227802652787748Rat
11475698LOC108352406uncharacterized LOC1083524061228061962817831Rat
1561466Clec4mC-type lectin domain family 4 member M1228176332826303Rat
1582956Cd209cCD209c molecule1228379912846709Rat
6492361LOC100911529CD209 antigen-like protein A-like1228915552911211Rat
11472072LOC108352407CD209 antigen-like protein A1229138132916819Rat
2322042LOC100363914hypothetical LOC1003639141229189132954890Rat
7686919LOC102557071CD99 antigen-like protein 2-like1231305563137100Rat
1587288LOC367503similar to N-terminal acetyltransferase complex ARD1 subunit homolog A1231922303192925Rat
2320712LOC100361149thioredoxin-like 41231929993193211Rat
7504711LOC102553614rho GTPase-activating protein 20-like1232081133274264Rat
1597229LOC691665similar to GTPase activating protein testicular GAP11232219903225480Rat
9402210LOC103693625uncharacterized LOC1036936251232531823269032Rat
6490747LOC100911852ralA-binding protein 1-like1232685753275503Rat
7570154LOC102554161uncharacterized LOC1025541611232722263279841Rat
9279273LOC103693613uncharacterized LOC1036936131232947913316876Rat
6485036LOC100912988uncharacterized LOC1009129881233015413309681Rat
9359793LOC103693614ubiquitin-like1233618363362584Rat
11409122LOC108352408uncharacterized LOC1083524081234085873418393Rat
1595715LOC498126hypothetical LOC4981261234869873488336Rat
1595714LOC498127similar to Ran-specific GTPase-activating protein (Ran-binding protein 1) (RanBP1)1234998173500496Rat
9362833LOC103693626CD209 antigen-like protein E1235346373539973Rat
2321843LOC100364014hypothetical LOC1003640141235429003545072Rat
1595716LOC498125hypothetical LOC4981251235526403554609Rat
1584108LOC688858similar to CD209a antigen1236688033675004Rat
7566104LOC102554944CD209 antigen-like protein C-like1237581163760518Rat
7617722LOC102555038EVI5-like protein-like1238074283809078Rat
1626011Vom2r-ps94vomeronasal 2 receptor, pseudogene 941239213453921565Rat
1562451RGD1562451similar to Pabpc4_predicted protein1239216123924757Rat
1587657Vom2r-ps95vomeronasal 2 receptor, pseudogene 951239252333925817Rat
11486599LOC108352480vomeronasal type-2 receptor 116-like1239646363965481Rat
1566381Vom2r59vomeronasal 2 receptor, 591239694934032641Rat
1560561Vom2r60vomeronasal 2 receptor, 601240543954436515Rat
1584154LOC688812similar to ubiquitin-activating enzyme E1C1241120434113433Rat
7726680LOC102555699CD209 antigen-like protein E-like1241299484133057Rat
1559710RGD1559710similar to DC-SIGN1241701454171026Rat
1309303Cers4ceramide synthase 41244397504474759Rat
1307656Dppa1-ps1developmental pluripotency associated 1, pseudogene 11245168074517215Rat
1586494Higd2al1HIG1 hypoxia inducible domain family, member 2A-like 11245462404546871Rat
1588856LOC688432similar to Proteasome subunit alpha type 6 (Proteasome iota chain) (Macropain iota chain) (Multicatalytic endopeptidase complex iota chain)1246336874634658Rat
7541342LOC102548389zinc finger protein 709-like1247189264743293Rat
1587650Vom2r-ps96vomeronasal 2 receptor, pseudogene 961247797814780749Rat
1626034Vom2r-ps90vomeronasal 2 receptor, pseudogene 901248395044840160Rat
1586802LOC683489similar to putative pheromone receptor (Go-VN4)1248464714962723Rat
1588806Vom2r-ps91vomeronasal 2 receptor, pseudogene 911249662715053359Rat
1583708Vom2r58vomeronasal 2 receptor, 581250571345201595Rat
2311392Zfp958zinc finger protein 9581254856915492254Rat
9377552LOC103690884uncharacterized LOC1036908841255352575541039Rat
1307034FryFRY microtubule binding protein1255737295822874Rat
7623530LOC102546827uncharacterized LOC1025468271258412535863436Rat
2320135LOC100361430hypothetical LOC1003614301259130135914099Rat
9685083Lnc001long non-coding RNA 0011259734245982603Rat
2320669LOC100361192mitochondrial ribosomal protein L171259911445991654Rat
1309449Rxfp2relaxin family peptide receptor 21260168846078411Rat
7673129LOC102549667uncharacterized LOC1025496671260199256022232Rat
7541036LOC102549550uncharacterized LOC1025495501260340936052545Rat
7508871LOC102549494uncharacterized LOC1025494941260911606094822Rat
11366562LOC108352409uncharacterized LOC1083524091261581726191585Rat
11406273LOC108352410uncharacterized LOC1083524101262301036234820Rat
7676248LOC102548901protein Bop-like1262305246231398Rat
1561029Wdr95WD40 repeat domain 951262654176317097Rat
1311609Hsph1heat shock protein family H (Hsp110) member 11263226856341898Rat
11470768LOC108352411uncharacterized LOC1083524111263420876345062Rat
1588723B3glctbeta 3-glucosyltransferase1264031186476010Rat
9364248LOC103690977heterogeneous nuclear ribonucleoprotein M pseudogene1264440856445482Rat
7706821LOC102549838uncharacterized LOC1025498381264784186491063Rat
11474527LOC108352412uncharacterized LOC1083524121265085976522644Rat
7745634LOC102549959uncharacterized LOC1025499591265442786555227Rat
9296856LOC103693615uncharacterized LOC1036936151265766816592744Rat
9184429LOC103690978uncharacterized LOC1036909781266026116624885Rat
7652109LOC102551137uncharacterized LOC1025511371266129096614983Rat
1560846Tex26testis expressed 261266719366711017Rat
1307396Medagmesenteric estrogen-dependent adipogenesis1267117456730959Rat
2319737LOC100361635hypothetical LOC1003616351267578016758396Rat
7626408LOC102551556uncharacterized LOC1025515561267593366763083Rat
7579713LOC102551624uncharacterized LOC1025516241267790216781349Rat
2097Alox5aparachidonate 5-lipoxygenase activating protein1268549306879112Rat
7570662LOC102551736uncharacterized LOC1025517361269041316905752Rat
9177507LOC10369107140S ribosomal protein S19 pseudogene1269138896914248Rat
11366571Trnan-guu11transfer RNA asparagine (anticodon GUU) 111269217326921805Rat
1310835Uspl1ubiquitin specific peptidase like 11269300186957027Rat
11363195LOC108352413uncharacterized LOC1083524131269878456991603Rat
7655374LOC102551796uncharacterized LOC1025517961270387987039995Rat
2802Hmgb1high mobility group box 11270825297090246Rat
7720578LOC102552204high mobility group protein B1-like1270873987088218Rat
11512107LOC108352414uncharacterized LOC1083524141271108387112219Rat
1595711LOC498135similar to 60S ribosomal protein L181271313467134321Rat
7603825LOC102552374uncharacterized LOC1025523741271370377148573Rat
7726090LOC102552453uncharacterized LOC1025524531271628097180968Rat
628793Rpl35al1ribosomal protein L35a-like 11271864597186874Rat
7611698LOC102552591uncharacterized LOC1025525911271932787195752Rat
9405013LOC103690050katanin p60 ATPase-containing subunit A-like 11272088367273411Rat
7625496LOC102553253uncharacterized LOC1025532531272782697284014Rat
7633756LOC102554452uncharacterized LOC1025544521273486517364684Rat
6497919LOC10091053960S ribosomal protein L18-like1273691567372131Rat
7675925LOC102554537uncharacterized LOC1025545371273748487386384Rat
7721386LOC102554603uncharacterized LOC1025546031274005957418754Rat
9247033LOC103690996uncharacterized LOC1036909961274242167424741Rat
7724641LOC102554734uncharacterized LOC1025547341274310627433536Rat
6499844LOC100910196katanin p60 ATPase-containing subunit A-like 1-like1274468047479232Rat
1359252Katnal1katanin catalytic subunit A1 like 11274954367550205Rat
7624565LOC102555153uncharacterized LOC1025551531275550637560808Rat
11441761LOC108352415uncharacterized LOC1083524151276273527629036Rat
11390141LOC108352416uncharacterized LOC1083524161276298097657356Rat
11455616LOC108352499uncharacterized LOC1083524991277706057771955Rat
9120795LOC103690998uncharacterized LOC1036909981277732487778968Rat
11375417LOC108352417uncharacterized LOC1083524171277902017799368Rat
11471298LOC108352418uncharacterized LOC1083524181278356877844093Rat
1305431Ubl3ubiquitin-like 31278659387911526Rat
6497599LOC100910580peptidyl-prolyl cis-trans isomerase A-like1279587537975232Rat
3716Slc7a1solute carrier family 7 member 11280327758108972Rat
1562533Mtus2microtubule associated scaffold protein 21281116558491553Rat
7711997LOC102547400uncharacterized LOC1025474001281668258172135Rat
9365489LOC103693616microtubule-associated tumor suppressor candidate 2 homolog1283235458356307Rat
1307594Slc46a3solute carrier family 46, member 31287254798741944Rat
1305831Pompproteasome maturation protein1287469488759433Rat
6494524LOC100911238proteasome maturation protein-like1289765558989216Rat
2621Flt1Fms related receptor tyrosine kinase 11290339939205886Rat
7682225LOC102547693interferon-induced transmembrane protein 2-like1290689319069616Rat
7630468LOC102547586uncharacterized LOC1025475861291026349105175Rat
1590880Pan3poly(A) specific ribonuclease subunit PAN31292141169331901Rat
9454737LOC103691002uncharacterized LOC1036910021292453029248579Rat
1584949LOC363870similar to ribosomal protein L18a1293515879353154Rat
61308Flt3Fms related receptor tyrosine kinase 31293604399437004Rat
1595191Uradureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase1294468089456777Rat
9407630LOC103691014uncharacterized LOC1036910141294597969461756Rat
621234Cdx2caudal type homeo box 21294640269470565Rat
62387Pdx1pancreatic and duodenal homeobox 11294960449501211Rat
1310020Gsx1GS homeobox 11296058739607168Rat
1564358Polr1dRNA polymerase I and III subunit D1296938289727416Rat
1308222Lnx2ligand of numb-protein X 21297284159793428Rat
9229737LOC103691017uncharacterized LOC1036910171297922039795830Rat
1592673Mtif3mitochondrial translational initiation factor 31298463559857548Rat
619746Gtf3ageneral transcription factor III A1298568419864791Rat
11371602LOC108352419uncharacterized LOC1083524191299367699947901Rat
7509863LOC102549051uncharacterized LOC1025490511299574849959892Rat
1303231Rasl11aRAS-like family 11 member A1299861509990284Rat
68390Rpl21ribosomal protein L211299969199999998Rat
7641919LOC102549133uncharacterized LOC102549133121001846810036783Rat
1308045Usp12ubiquitin specific peptidase 12121003768610087685Rat
11367524LOC108352420uncharacterized LOC108352420121003777110041790Rat
68333Gpr12G protein-coupled receptor 12121025371010257135Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
39814D12Rat571261212581391258256Ratregion
1639481D12Got2282801213334331333707Ratregion
5089849AU0493991891214158211416009Ratregion
67355D12Arb121691216822671682435Ratregion
1631234D12Wox282091216822761682484Ratregion
1633212D12Wox262231216869831687205Ratregion
40232D12Rat561621217337791733943Ratregion
5088369AU0485281361217542701754405Ratregion
5082871BF3903011571217560511756207Ratregion
5031368PMC152262P11391217936841793822Ratregion
1630995D12Got2181271219678081967934Ratregion
5045898RH1314422181219747281975007Ratregion
5054931RH1435081321219802091980340Ratregion
5026282RH1316142041219978971998100Ratregion
5049190RH1333371831220503602050542Ratregion
5504766PMC88885P11191220588872059005Ratregion
5068542AU0470831521221156252115776Ratregion
5046810RH1319672111221570422157252Ratregion
5079690RH1411471841221714792172342Ratregion
5499695Pcp21821221724752173686Ratregion
5039894RH1279692161221730342173249Ratregion
5502657RH1264922331221901172190893Ratregion
5039502RH1277422191222038392204057Ratregion
5079510RH1410392171222166712216887Ratregion
5080076RH1413691851222314422231626Ratregion
5073688RH1375811551222326692232823Ratregion
1638478D12Got2042591222450752245333Ratregion
5089749AU0493401691223065762306752Ratregion
1632450D12Got2051511223432062343351Ratregion
5085705BQ1993852161224301212430336Ratregion
5050288RH1339702191225017112501929Ratregion
5506064UniSTS:4982644101225019282502337Ratregion
5027351AI481177881225050992505186Ratregion
5079108RH1407401701225246752525125Ratregion
5070307RH1261192201225334502533669Ratregion
5043390RH1299981901225354722535661Ratregion
5045082RH1309732141225373512537564Ratregion
5071146RH1349141951225463682546556Ratregion
5046374RH1317162061225867902586995Ratregion
5049422RH1334722121225881132588324Ratregion
5026860RH1338061841226585122658695Ratregion
5071936RH1353702001227477392747933Ratregion
7206784G4564601232815213281725Ratregion
1628028D12Got2221301234824803482609Ratregion
5035544Ranbp101234999323500411Ratregion
5041398RH1288342081235580053558214Ratregion
5089971AU0494732081237586913758882Ratregion
5037059A001T471051239217673921871Ratregion
5506413UniSTS:4791876001239227383923337Ratregion
5089971AU0494732081241279554128162Ratregion
5071888RH1353432131244369064437118Ratregion
5048716RH1330642101245466044546813Ratregion
1634940D12Got2211481247100314710178Ratregion
39744D12Rat591891254060945406276Ratregion
5053209RH1425162341254954225495655Ratregion
5081170RH1420052071256029485603151Ratregion
66382D12Mco31001256372985637400Ratregion
5059936BF4001571261258150145815139Ratregion
5075350RH1385441271258577775857903Ratregion
5034089RH1413241621258635575863718Ratregion
5056985AF3465022081258849605885167Ratregion
5063540BE1077631861259435315943716Ratregion
1639855D12Got2272281259497555949982Ratregion
5062620BF4035382151260503766050590Ratregion
5065238BE1212541601261232246123383Ratregion
5062174BE1128792151261459976146211Ratregion
44923D12Got12271261468126147038Ratregion
44928D12Got61861262997276300789Ratregion
5084282AI6000711341263227806322913Ratregion
5025756RH1295401861263282326328417Ratregion
5082037BF4091781601263448586345019Ratregion
5036813AU0492872411263589406359180Ratregion
5036813AU0492872411263589866359180Ratregion
5071608RH1351801941264730166473209Ratregion
5036635AU0486662671264816926481958Ratregion
44925D12Got91481266207516620898Ratregion
60757D12Wox62231266288196629041Ratregion
5083899AA8925781211267119206712040Ratregion
5499907UniSTS:2353742171269313846931600Ratregion
44934D12Got73001269425216942820Ratregion
5063534BF4043221841269817526981935Ratregion
5059782BE0978531641270906287090791Ratregion
5059782BE0978531641270925727092735Ratregion
5059400AW5305861631271108957111057Ratregion
5090183AU0496002571271179117118168Ratregion
5045260RH1310762011271481267148326Ratregion
5029113RH1435721761271684707168645Ratregion
5049492RH1335121881271788897179076Ratregion
5026540RH1326022061271954377195642Ratregion
5066850AU0481142661273116807311945Ratregion
5059400AW5305861631273487087348870Ratregion
5090183AU0496002571273557217355978Ratregion
5045260RH1310762011273859377386137Ratregion
5029113RH1435721761274062567406431Ratregion
5049492RH1335121881274166757416862Ratregion
5026540RH1326022061274332217433426Ratregion
5066850AU0481142661275881677588432Ratregion
5090773AU0499552031278688697869164Ratregion
5090773AU0499552031278689627869164Ratregion
5090059AU0495261721278741977874368Ratregion
5029535AA9246042061279111577911362Ratregion
5063316BE1075101531280803078080459Ratregion
1634822D12Got2061601280893418089500Ratregion
5083571BI2762541741281051678105340Ratregion
1630072D12Wox213161281064038106718Ratregion
5051831RH946831891281066608106848Ratregion
5055245RH1436901091281079008108008Ratregion
5062850BE1130361681281087488108915Ratregion
5056047RH1441521491281119408112088Ratregion
5080772RH1417731501281137118113860Ratregion
44926D12Got81441281548948155037Ratregion
5062950BF410097941281867048186797Ratregion
44930D12Got51531282462748246426Ratregion
41956D12Arb131941282496088249839Ratregion
5030185BF4014831091283236628323770Ratregion
5030121BE0987221641284329238433086Ratregion
5072160RH1366872131284471358447347Ratregion
5038990RH1274492081287415808741787Ratregion
38952D12Rat401201287814838781592Ratregion
5032611RH1346442141288553268855539Ratregion
5026280RH1316061901289393698939559Ratregion
38952D12Rat401201289544848954593Ratregion
5032611RH1346442141290197379019950Ratregion
5028915RH1428052071291110549111260Ratregion
5083199BF3909751761291249839125158Ratregion
5030067AW5319541581291260479126204Ratregion
44929D12Got41481291572429157386Ratregion
5062784AW5344181671291658809166046Ratregion
5506600Flt101291836899185370Ratregion
5070005RH94413881292036369203723Ratregion
5073542RH1374961871292043259204511Ratregion
5045642RH1312951841292055089205692Ratregion
5034343SGC345121341292141469214279Ratregion
5047332RH1322661971292141889214384Ratregion
5054899RH1434881011292270539227153Ratregion
5050756RH1342401961293447749344967Ratregion
5499659MARC_6763-6764:992007406:11251293528519352975Ratregion
5054773RH1434171571293601669360322Ratregion
5501648UniSTS:26548815561294191839420738Ratregion
5065018BF4054852081294298519430058Ratregion
5042902RH1297121811294366629436842Ratregion
5052013RH947891691294960479496215Ratregion
5051833RH946841751294962109496383Ratregion
5052406Pdx13091294964359496743Ratregion
5087907Gsh11491296052039605351Ratregion
5048398RH1328812161297260879726302Ratregion
5081024RH1419202121297924299792640Ratregion
5035687D16S313101298459189846634Ratregion
5057914AI5488301361298519439852078Ratregion
5039162RH1275471891298569259857308Ratregion
5083053BF3907121551298573189857472Ratregion
5032921RH1369731901299964059996594Ratregion
44936D12Got10203121002612210026625Ratregion
44936D12Got10203121002642310026625Ratregion
5085090AW533163150121009216710092317Ratregion
5048556RH132971214121010088210101095Ratregion
44938D12Got11156121017588910176044Ratregion
44055D6Got30118121017591510177299Ratregion
41960D12Arb2170121025689010257059Ratregion
Position Markers

Flank 1: (D12Rat57)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0121,258,139 - 1,258,256NCBI
Rnor_5.0121,236,564 - 1,236,681UniSTS
RGSC_v3.4123,438,582 - 3,438,700RGD
RGSC_v3.4123,438,583 - 3,438,700UniSTS
RGSC_v3.1123,438,582 - 3,438,700RGD
Celera122,500,821 - 2,500,938UniSTS
SHRSP x BN Map122.13UniSTS
SHRSP x BN Map122.13RGD
Peak: (D12Rat59)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0125,406,094 - 5,406,276NCBI
Rnor_5.0127,519,792 - 7,519,974UniSTS
RGSC_v3.412155,314 - 155,496UniSTS
RGSC_v3.412155,313 - 155,496RGD
RGSC_v3.4124,864,404 - 4,864,585RGD
RGSC_v3.4124,864,405 - 4,864,585UniSTS
RGSC_v3.1124,864,215 - 4,864,623RGD
Celera125,959,333 - 5,959,515UniSTS
SHRSP x BN Map125.62UniSTS
SHRSP x BN Map125.62RGD
Flank 2: (D12Arb2)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01210,256,890 - 10,257,059NCBI
Rnor_5.01212,361,595 - 12,361,764UniSTS
Celera1210,340,887 - 10,341,056UniSTS
Cytogenetic Map12p11UniSTS
RH 3.4 Map12110.7RGD
RH 3.4 Map12110.7UniSTS
RH 2.0 Map1288.7RGD
SHRSP x BN Map1211.64RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12111765163Rat
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12122650917Rat
10450854Stl34Serum triglyceride level QTL 343.50.05blood LDL triglyceride amount (VT:0010699)blood lipoprotein triglyceride level (CMO:0002685)12122853017Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12123035872Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123758197Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12130749723Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12136919844Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12138334225Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)1215081045150810Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1215081045150810Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)1215081045150810Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1215081045150810Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1215081045150810Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1215081045150810Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)1215081045150810Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)1249257845492578Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12125813910257059Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12247568747475687Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12251344247513442Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12251344247513442Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12421005149210051Rat
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12540609412355490Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12824960820590080Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12895459327911196Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6922362652716770Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12922362652716770Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12922362652716770Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12922362652716770Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12922362652716770Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12922362652716770Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12922363052716770Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12978983452716770Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121017588931975590Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)121025689031723732Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general this region spans 12 Mb 7327193
qtl_general inducing agent:50mg/kg body wt of N-Methyl-N-Nitrosourea (NMU) 7327193
qtl_general syntenic to human chr 13q12-13q13 7327193
qtl_general measuring method: 50-55 days old females were given NMU and 30% fat diet; weekly palpatation was done for tumor formation, number and latency of tumors was recorded 7327193