Mcs30 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Mcs30 (Mammary carcinoma susceptibility QTL 30) Rattus norvegicus

Symbol: Mcs30
Name: Mammary carcinoma susceptibility QTL 30
RGD ID: 7243862
Trait: mammary gland integrity trait   (VT:0010552)    
Measurement Type: mammary tumor number   (CMO:0000343)    
LOD Score: 8.62
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.212797,729 - 8,525,593RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0121,258,139 - 10,257,059RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0121,236,564 - 12,361,764RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4121,581,198 - 3,438,700RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: COP/OlaHsd F344/NHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Fry is a candidate Gene for Mcs30

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
COP/OlaHsd  (IEA)
F344/NHsd  (IEA)

References


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1564816Stard13StAR-related lipid transfer domain containing 1312566282959372Rat
7733180LOC102549089uncharacterized LOC10254908912874530895451Rat
1306832Rfc3replication factor C subunit 31210009871011778Rat
1626010Vom2r-ps97vomeronasal 2 receptor, pseudogene 971210194521019856Rat
7657613LOC102554571uncharacterized LOC1025545711210274001034088Rat
41130581LOC1200960765S ribosomal RNA1210444051044522Rat
41104179LOC1200960255S ribosomal RNA1210467881046905Rat
41346935LOC1200960445S ribosomal RNA1210491651049282Rat
41176726LOC1200960245S ribosomal RNA1210515581051675Rat
41356693LOC1200960265S ribosomal RNA1210539471054064Rat
41212099LOC1200960575S ribosomal RNA1210564701056587Rat
41357490LOC1200960685S ribosomal RNA1210589721059089Rat
41403812LOC1200960795S ribosomal RNA1210614201061537Rat
41069558LOC1200960455S ribosomal RNA1210638881064005Rat
41006314LOC1200960875S ribosomal RNA1210663381066455Rat
41131872LOC1200960985S ribosomal RNA1210687811068898Rat
41374131LOC1200961095S ribosomal RNA1210712191071336Rat
41302635LOC1200960475S ribosomal RNA1210736891073806Rat
40985259LOC1200961205S ribosomal RNA1210772421077359Rat
41138966LOC1200961285S ribosomal RNA1210796731079790Rat
41027400LOC1200960355S ribosomal RNA1210820841082201Rat
41373317LOC1200960465S ribosomal RNA1210845401084657Rat
41372926LOC1200960425S ribosomal RNA1210871331087250Rat
40946566LOC1200960435S ribosomal RNA1210925261092643Rat
41321651LOC1200961295S ribosomal RNA1210970421097159Rat
41056936LOC1200961305S ribosomal RNA1210994951099612Rat
41397522LOC1200961315S ribosomal RNA1211019441102061Rat
40991136LOC1200960305S ribosomal RNA1211044011104518Rat
40943520LOC1200961325S ribosomal RNA1211068521106969Rat
41342315LOC1200960325S ribosomal RNA1211093151109432Rat
41200848LOC1200961335S ribosomal RNA1211134531113570Rat
40982953LOC1200961345S ribosomal RNA1211159101116027Rat
41011955LOC1200961355S ribosomal RNA1211183641118481Rat
41087041LOC1200961365S ribosomal RNA1211208291120946Rat
41337266LOC1200960775S ribosomal RNA1211232981123415Rat
40930505LOC1200961375S ribosomal RNA1211256911125808Rat
41140913LOC1200960275S ribosomal RNA1211280871128204Rat
41298784LOC1200960295S ribosomal RNA1211310561131173Rat
41176958LOC1200961395S ribosomal RNA1211334571133574Rat
41235651LOC1200960695S ribosomal RNA1211359121136034Rat
41233192LOC1200961405S ribosomal RNA1211388621138979Rat
41398600LOC1200961415S ribosomal RNA1211413211141438Rat
41054696LOC1200961425S ribosomal RNA1211437681143885Rat
41133412LOC1200961435S ribosomal RNA1211462111146328Rat
41113017LOC1200961445S ribosomal RNA1211486721148789Rat
41166108LOC1200960335S ribosomal RNA1211511281151245Rat
41132848LOC1200960375S ribosomal RNA1211535731153690Rat
41397614LOC1200960525S ribosomal RNA1211567021156819Rat
3581Rn5s5S RNA1211591401159259Rat
41320765LOC1200960535S ribosomal RNA1211616651161782Rat
41261663LOC1200960545S ribosomal RNA1211640891164206Rat
41008532LOC1200960555S ribosomal RNA1211665541166671Rat
41070426LOC1200960725S ribosomal RNA1211689951169112Rat
41141455LOC1200960565S ribosomal RNA1211714301171547Rat
41267528LOC1200960735S ribosomal RNA1211738511173968Rat
41063253LOC1200960585S ribosomal RNA1211762821176399Rat
41251274LOC1200960345S ribosomal RNA1211787361178853Rat
41149510LOC1200961265S ribosomal RNA1211811411181258Rat
2917Insrinsulin receptor1211931931330976Rat
1311448Arhgef18Rho/Rac guanine nucleotide exchange factor 181213950351503081Rat
41103128LOC120095921dentin sialophosphoprotein-like1214077781414568Rat
41251662LOC120095867uncharacterized LOC1200958671214728701474543Rat
1307070Pex11gperoxisomal biogenesis factor 11 gamma1215026061532347Rat
1563425Tex45testis expressed 451215209831538127Rat
1310416Zfp358zinc finger protein 3581215523671556460Rat
1308953Mcoln1mucolipin TRP cation channel 11215603411574252Rat
41326642LOC120095868uncharacterized LOC1200958681215723811575749Rat
1564611Pnpla6patatin-like phospholipase domain containing 61215743871603735Rat
1597412Camsap3calmodulin regulated spectrin-associated protein family, member 31216430621666685Rat
621217Xab2XPA binding protein 21216676721679702Rat
1585222Pet100PET100 cytochrome c oxidase chaperone1216798051682540Rat
1306217Pcp2Purkinje cell protein 21216816591683899Rat
9327255LOC103690858uncharacterized LOC1036908581216858931689330Rat
619967Stxbp2syntaxin binding protein 21216893641701145Rat
628781Retnresistin1217108811712621Rat
1565374Mcemp1mast cell-expressed membrane protein 11217217811727350Rat
41404528LOC120095869foxo1-corepressor-like1217283481730464Rat
1563971Trappc5trafficking protein particle complex subunit 51217376661741312Rat
619997Fcer2Fc epsilon receptor II1217428091754476Rat
1597482Clec4gC-type lectin domain family 4, member G1217803701785027Rat
1308239Cd209aCD209a antigen1218226631828246Rat
1563333Cd209eCD209e molecule1218621041868735Rat
1561104Cd209CD209 molecule1218911091897559Rat
1561466Clec4mC-type lectin domain family 4 member M1219159021924529Rat
1582956Cd209cCD209c molecule1219362331943841Rat
41396306LOC120095849uncharacterized LOC1200958491219830311986040Rat
2322042LOC100363914hypothetical LOC1003639141220045272011820Rat
1595714LOC498127similar to Ran-specific GTPase-activating protein (Ran-binding protein 1) (RanBP1)1220695242070189Rat
9362833LOC103693626CD209 antigen-like protein E1221002032111338Rat
1584108LOC688858similar to CD209a antigen1221898742197257Rat
1559710RGD1559710similar to DC-SIGN1222228452236656Rat
41255484LOC120095922CD209 antigen-like protein C1222766112281179Rat
7566104LOC102554944CD209 antigen-like protein C-like1223125952319488Rat
1584154LOC688812similar to ubiquitin-activating enzyme E1C1223333192334709Rat
1564571RGD1564571similar to DC-SIGN1223589412366451Rat
1585219LOC688789hypothetical protein LOC6887891223982082399111Rat
2324825LOC100363064rCG58956-like1224261482429043Rat
1585245LOC688763similar to NFKB inhibitor interacting Ras-like protein 21224679142472875Rat
1585258Cd209fCD209f antigen1224844322487493Rat
9311972LOC103690865uncharacterized LOC1036908651224907522518506Rat
1561962Evi5lecotropic viral integration site 5-like1225196482558766Rat
1566084Prr36proline rich 361225605332567766Rat
1311979Lrrc8eleucine rich repeat containing 8 VRAC subunit E1225782402589407Rat
1560043Map2k7mitogen activated protein kinase kinase 71225913122604211Rat
41161201LOC120095870uncharacterized LOC1200958701226056112607753Rat
1304589Snapc2small nuclear RNA activating complex, polypeptide 21226057942608997Rat
2449Ctxn1cortexin 11226104652612076Rat
3864Timm44translocase of inner mitochondrial membrane 441226125812629374Rat
1308649Elavl1ELAV like RNA binding protein 11226409362684787Rat
7721017LOC102552452uncharacterized LOC1025524521226880052694910Rat
1305530Ccl25C-C motif chemokine ligand 251227073982716571Rat
1586494Higd2al1HIG1 hypoxia inducible domain family, member 2A-like 11227770942777581Rat
1307656Dppa1-ps1developmental pluripotency associated 1, pseudogene 11228085692809099Rat
1309303Cers4ceramide synthase 41228517842890244Rat
1560561Vom2r60vomeronasal 2 receptor, 601228902262996619Rat
1566381Vom2r59vomeronasal 2 receptor, 591230139423077289Rat
1587650Vom2r-ps96vomeronasal 2 receptor, pseudogene 961230813013082269Rat
1587657Vom2r-ps95vomeronasal 2 receptor, pseudogene 951231151823115828Rat
1562451RGD1562451similar to Pabpc4_predicted protein1231161363119449Rat
1626011Vom2r-ps94vomeronasal 2 receptor, pseudogene 941231194963119716Rat
41008076LOC120095923vomeronasal type-2 receptor 116-like1231634203198108Rat
1586802LOC683489similar to putative pheromone receptor (Go-VN4)1232083143310274Rat
1588806Vom2r-ps91vomeronasal 2 receptor, pseudogene 911233202573392653Rat
1583708Vom2r58vomeronasal 2 receptor, 581233964303503345Rat
1626034Vom2r-ps90vomeronasal 2 receptor, pseudogene 901235621513562807Rat
41299569LOC120093129vomeronasal type-2 receptor 116-like1235691283668835Rat
1588856LOC688432similar to Proteasome subunit alpha type 6 (Proteasome iota chain) (Macropain iota chain) (Multicatalytic endopeptidase complex iota chain)1237700673771038Rat
41347965LOC120095871zinc finger protein 431-like1238531703876224Rat
41256273LOC120095873uncharacterized LOC1200958731238908813897577Rat
9377552LOC103690884uncharacterized LOC1036908841239205313925662Rat
41226170LOC12009587240S ribosomal protein S29-like1239465963946774Rat
2311392Zfp958zinc finger protein 9581239532203976005Rat
41046868LOC1200960675S ribosomal RNA1240071764007293Rat
41387537LOC1200960665S ribosomal RNA1240095514009668Rat
40991196LOC1200960745S ribosomal RNA1240119084012025Rat
41189384LOC1200960615S ribosomal RNA1240142774014394Rat
41285596LOC1200960705S ribosomal RNA1240166194016736Rat
41306760LOC1200960655S ribosomal RNA1240189864019103Rat
41185968LOC1200960515S ribosomal RNA1240213534021470Rat
41067246LOC1200961455S ribosomal RNA1240239384024055Rat
41368807LOC1200960365S ribosomal RNA1240264994026616Rat
41034193LOC1200960635S ribosomal RNA1240291004029217Rat
40955274LOC1200960755S ribosomal RNA1240314514031568Rat
41246028LOC1200960385S ribosomal RNA1240353314035448Rat
41049974LOC1200960395S ribosomal RNA1240377824037899Rat
41032388LOC1200961465S ribosomal RNA1240402454040362Rat
41288590LOC1200961475S ribosomal RNA1240460024046119Rat
40973600LOC1200961485S ribosomal RNA1240484514048568Rat
41160453LOC1200961505S ribosomal RNA1240508984051015Rat
41247322LOC1200960405S ribosomal RNA1240533474053464Rat
41319385LOC1200961515S ribosomal RNA1240558024055919Rat
40968514LOC1200961525S ribosomal RNA1240582434058360Rat
41251912LOC1200961535S ribosomal RNA1240606874060804Rat
40951568LOC1200961545S ribosomal RNA1240630904063207Rat
40979147LOC1200961555S ribosomal RNA1240655644065681Rat
41037782LOC1200961565S ribosomal RNA1240680234068140Rat
41327139LOC1200961575S ribosomal RNA1240704804070597Rat
41167764LOC1200961585S ribosomal RNA1240729384073055Rat
41192930LOC1200961385S ribosomal RNA1240753864075503Rat
41057530LOC1200961595S ribosomal RNA1240784854078602Rat
41382435LOC1200960715S ribosomal RNA1240809734081089Rat
41124546LOC1200961495S ribosomal RNA1240834444083561Rat
40943309LOC1200960485S ribosomal RNA1240867184086835Rat
41391876LOC1200960595S ribosomal RNA1240894274089544Rat
40972850LOC1200960495S ribosomal RNA1240919074092024Rat
41130517LOC1200960315S ribosomal RNA1240945064094623Rat
41232418LOC1200960505S ribosomal RNA1240969944097111Rat
41346439LOC1200960605S ribosomal RNA1240995614099678Rat
41366972LOC1200961615S ribosomal RNA1241019594102076Rat
41350955LOC1200961625S ribosomal RNA1241058964106013Rat
41339942LOC1200961635S ribosomal RNA1241083464108463Rat
41117008LOC1200961645S ribosomal RNA1241108124110929Rat
40961569LOC1200960415S ribosomal RNA1241132844113401Rat
41283255LOC1200961655S ribosomal RNA1241157284115845Rat
41118806LOC1200960205S ribosomal RNA1241181924118309Rat
40974699LOC1200960215S ribosomal RNA1241228624122979Rat
41375950LOC1200960235S ribosomal RNA1241267604126877Rat
41314973LOC1200960625S ribosomal RNA1241305744130691Rat
40969596LOC1200961605S ribosomal RNA1241330324133149Rat
41233053LOC1200960225S ribosomal RNA1241369354137052Rat
41335413LOC1200960285S ribosomal RNA1241394184139535Rat
40975160LOC1200960645S ribosomal RNA1241497994149916Rat
41341942LOC120095875uncharacterized LOC1200958751241560184162757Rat
1565198LOC304239similar to RalA binding protein 11242013574246044Rat
41113965LOC120095874N-alpha-acetyltransferase 11-like1242390824239933Rat
41396100LOC120095876uncharacterized LOC1200958761242662284268545Rat
1589449LOC680627similar to GTPase activating protein testicular GAP11243149344349420Rat
2318961LOC100362019thioredoxin-like 41243494804349671Rat
1588474LOC367447similar to N-terminal acetyltransferase complex ARD1 subunit homolog A1243495824350635Rat
7541342LOC102548389zinc finger protein 709-like1244134724438668Rat
40995874LOC12009585040S ribosomal protein S29-like1244455254445703Rat
1307034FryFRY microtubule binding protein1244938904887118Rat
7623530LOC102546827uncharacterized LOC1025468271247366364777460Rat
2320135LOC100361430hypothetical LOC1003614301248228624823747Rat
9685083Lnc001long non-coding RNA 0011248824264891557Rat
2320669LOC100361192mitochondrial ribosomal protein L171249002934900803Rat
40971691LOC120095826uncharacterized LOC1200958261249034044909107Rat
41340188LOC120095827uncharacterized LOC1200958271249100434920193Rat
1309449Rxfp2relaxin family peptide receptor 21249257224986596Rat
7673129LOC102549667uncharacterized LOC1025496671249292974931077Rat
7508871LOC102549494uncharacterized LOC1025494941249824375005223Rat
11366562LOC108352409uncharacterized LOC1083524091250632515100059Rat
41057449LOC120095829uncharacterized LOC1200958291251474445159515Rat
41169568LOC120095828uncharacterized LOC1200958281251597175161108Rat
7745634LOC102549959uncharacterized LOC1025499591251763315187300Rat
41195301LOC120095830uncharacterized LOC1200958301252403125254011Rat
1588723B3glctbeta 3-glucosyltransferase1252555215346998Rat
41241977LOC120095832uncharacterized LOC1200958321252765025276915Rat
9364248LOC103690977heterogeneous nuclear ribonucleoprotein M pseudogene1252862115286732Rat
41254188LOC120095831heterogeneous nuclear ribonucleoprotein M-like1252866865287853Rat
40969776LOC120096107small nucleolar RNA SNORA671253434635343605Rat
11470768LOC108352411uncharacterized LOC1083524111253844735390758Rat
1311609Hsph1heat shock protein family H (Hsp110) member 11253909165410224Rat
1561029Wdr95WD40 repeat domain 951254158155466253Rat
41072978LOC120095877uncharacterized LOC1200958771254675095482055Rat
7652109LOC102551137uncharacterized LOC1025511371255139145517597Rat
41023871LOC120095878uncharacterized LOC1200958781255197525557168Rat
1560846Tex26testis expressed 261255736915605209Rat
1307396Medagmesenteric estrogen-dependent adipogenesis1256131915634701Rat
41238510LOC12009585160S ribosomal protein L28-like1256501915651868Rat
7626408LOC102551556uncharacterized LOC1025515561256529055656673Rat
41269287LOC120096091U4 spliceosomal RNA1257218415721973Rat
2097Alox5aparachidonate 5-lipoxygenase activating protein1257489415772986Rat
7570662LOC102551736uncharacterized LOC1025517361257955875800442Rat
41282038LOC120095879uncharacterized LOC1200958791257994835804796Rat
9177507LOC10369107140S ribosomal protein S19 pseudogene1258076915808050Rat
11366571Trnan-guu11transfer RNA asparagine (anticodon GUU) 111258151765815249Rat
1310835Uspl1ubiquitin specific peptidase like 11258234605850470Rat
41267679LOC120095880uncharacterized LOC1200958801258719155877312Rat
11363195LOC108352413uncharacterized LOC1083524131258720435884746Rat
41369369LOC120096113small nucleolar RNA SNORA381259231965923336Rat
2802Hmgb1high mobility group box 11259730625978565Rat
40996540LOC120095881uncharacterized LOC1200958811259845126001896Rat
41351322LOC12009592560S ribosomal protein L18-like1260048556020163Rat
7675925LOC102554537uncharacterized LOC1025545371260234776034436Rat
7721386LOC102554603uncharacterized LOC1025546031260368536072289Rat
9247033LOC103690996uncharacterized LOC1036909961260722796072780Rat
7724641LOC102554734uncharacterized LOC1025547341260790146081600Rat
1359252Katnal1katanin catalytic subunit A1 like 11260946636156114Rat
7625496LOC102553253uncharacterized LOC1025532531261583856168368Rat
11390141LOC108352416uncharacterized LOC1083524161262337616266127Rat
11375417LOC108352417uncharacterized LOC1083524171263796526406988Rat
41029597LOC120095882uncharacterized LOC1200958821264091246412537Rat
1305431Ubl3ubiquitin-like 31264736846518331Rat
6497599LOC100910580peptidyl-prolyl cis-trans isomerase A-like1265655536570171Rat
3716Slc7a1solute carrier family 7 member 11266282146703849Rat
1562533Mtus2microtubule associated scaffold protein 21267065317078331Rat
7711997LOC102547400uncharacterized LOC1025474001267617456766523Rat
41261087LOC120096082U2 spliceosomal RNA1269766606976752Rat
1307594Slc46a3solute carrier family 46, member 31271406107157093Rat
1305831Pompproteasome maturation protein1271620987174737Rat
2621Flt1Fms related receptor tyrosine kinase 11272968997468626Rat
7630468LOC102547586uncharacterized LOC1025475861273648167366809Rat
41146634LOC120095883uncharacterized LOC1200958831273750657392844Rat
1590880Pan3poly(A) specific ribonuclease subunit PAN31274767077595380Rat
1584949LOC363870similar to ribosomal protein L18a1276150657616561Rat
61308Flt3Fms related receptor tyrosine kinase 31276236587699474Rat
1595191Uradureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase1277092337718925Rat
621234Cdx2caudal type homeo box 21277267987733142Rat
62387Pdx1pancreatic and duodenal homeobox 11277578657763064Rat
41344340LOC120096117small nucleolar RNA SNORA171278726267872754Rat
1310020Gsx1GS homeobox 11278814607882753Rat
41319381LOC120095852uncharacterized LOC1200958521278837557884688Rat
1564358Polr1dRNA polymerase I and III subunit D1279705928004157Rat
1308222Lnx2ligand of numb-protein X 21280052028070494Rat
40941861LOC120095885uncharacterized LOC1200958851281099548112013Rat
41360313LOC120095884uncharacterized LOC1200958841281100828112776Rat
1592673Mtif3mitochondrial translational initiation factor 31281261938140706Rat
619746Gtf3ageneral transcription factor III A1281367468144690Rat
41103769LOC120095886uncharacterized LOC1200958861281891238196982Rat
11371602LOC108352419uncharacterized LOC1083524191282166898229202Rat
1303231Rasl11aRAS-like family 11 member A1282581488262576Rat
68390Rpl21ribosomal protein L211282686418272290Rat
40978574LOC120096115small nucleolar RNA SNORA271282699058270033Rat
41011142LOC120096105small nucleolar RNA SNORD1021282702758270345Rat
41141036LOC120095928protein LMBR1L-like1283054028306445Rat
1308045Usp12ubiquitin specific peptidase 121283098458363686Rat
41208279LOC120095887uncharacterized LOC1200958871284381968439433Rat
68333Gpr12G protein-coupled receptor 121285227098525875Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
39744D12Rat591891239069693907152Ratregion
39814D12Rat5712612797729797847Ratregion
40232D12Rat561621212478641248029Ratregion
38952D12Rat401201271967307196840Ratregion
38952D12Rat401201271967307196840Ratregion
41956D12Arb131941268331906833424Ratregion
41960D12Arb21701285254238525593Ratregion
44055D6Got301181284495168450901Ratregion
44923D12Got12271250553765055605Ratregion
44925D12Got91481255217325521880Ratregion
44926D12Got81441267498796750023Ratregion
44928D12Got61861254330245433143Ratregion
44929D12Got41481274199747420119Ratregion
44930D12Got51531268427256842878Ratregion
44934D12Got73001258359675836267Ratregion
44936D12Got102031282984208298623Ratregion
44936D12Got102031282983078298623Ratregion
44938D12Got111561284494908449646Ratregion
60757D12Wox62231255312025531425Ratregion
67355D12Arb121691211968391197008Ratregion
1630072D12Wox213161267012776701595Ratregion
1630995D12Got2181271214723331472460Ratregion
1631234D12Wox282091211968481197057Ratregion
1628028D12Got2221301220522282052358Ratregion
1639481D12Got22828012873832874107Ratregion
1633212D12Wox262231212015551201778Ratregion
1639855D12Got2272281248588204859048Ratregion
1634940D12Got2211481238437653843913Ratregion
1638478D12Got2042591217542261754485Ratregion
1632450D12Got2051511218239081824054Ratregion
1634822D12Got2061601266842106684370Ratregion
5038990RH1274492081271567287156936Ratregion
5039162RH1275471891281368298137213Ratregion
5036635AU0486662671252495345249801Ratregion
5036813AU0492872411253734625373703Ratregion
5036813AU0492872411253734625373657Ratregion
5037059A001T471051231191893119294Ratregion
5037059A001T471051231191893119294Ratregion
5035544Ranbp101220696392070119Ratregion
5035687D16S313101281258208126537Ratregion
5031368PMC152262P11391213078151307954Ratregion
5034089RH1413241621247772864777448Ratregion
5026280RH1316061901272121397212330Ratregion
5026282RH1316142041215028501503054Ratregion
5028915RH1428052071273736017373808Ratregion
5034343SGC345121341274767407476874Ratregion
5026540RH1326022061260812846081490Ratregion
5029113RH1435721761260543136054489Ratregion
5026860RH1338061841224872712487455Ratregion
5029535AA9246042061265179616518167Ratregion
5032611RH1346442141272826167282830Ratregion
5032611RH1346442141272826167282830Ratregion
5027351AI481177881226411062641194Ratregion
5030067AW5319541581273887747388932Ratregion
5030121BE0987221641270192757019439Ratregion
5030185BF4014831091269090786909187Ratregion
5032921RH1369731901282686968268886Ratregion
5025756RH1295401861254044695404655Ratregion
5051833RH946841751277580307758204Ratregion
5052013RH947891691277578677758036Ratregion
5054931RH1435081321214847361484868Ratregion
5056985AF3465022081247987924799000Ratregion
5051831RH946831891267015366701725Ratregion
5059400AW5305861631259967535996916Ratregion
5054773RH1434171571276236557623812Ratregion
5054899RH1434881011274896507489751Ratregion
5057914AI5488301361281318478131983Ratregion
5056047RH1441521491267068166706965Ratregion
5056047RH1441521491267068166706965Ratregion
5055245RH1436901091267027766702885Ratregion
5059782BE0978531641259789465979110Ratregion
5059936BF4001571261247290974729223Ratregion
5053209RH1425162341244253964425630Ratregion
5053209RH1425162341239658343966068Ratregion
5053209RH1425162341238656623865896Ratregion
5052406Pdx13091277582557758564Ratregion
5050288RH1339702191226443632644582Ratregion
5050756RH1342401961276082467608440Ratregion
5043390RH1299981901226106262610816Ratregion
5045082RH1309732141226087232608937Ratregion
5045642RH1312951841274682477468432Ratregion
5048716RH1330642101227770242777234Ratregion
5046374RH1317162061225596632559869Ratregion
5045260RH1310762011260339886034189Ratregion
5049190RH1333371831215562541556437Ratregion
5045898RH1314422181214792541479534Ratregion
5046810RH1319672111216663231666534Ratregion
5049422RH1334722121225583342558546Ratregion
5049492RH1335121881260647386064926Ratregion
5047332RH1322661971274767827476979Ratregion
5048398RH1328812161280028278003043Ratregion
5039894RH1279692161216823141682530Ratregion
5048556RH1329712141283740858374299Ratregion
5039502RH1277422191217128101713029Ratregion
5042902RH1297121811276991317699312Ratregion
5041398RH1288342081221820862182296Ratregion
5072160RH1366872131270336217033834Ratregion
5075350RH1385441271247715054771632Ratregion
5079510RH1410392171217256541725871Ratregion
5079690RH1411471841216807571681621Ratregion
5080076RH1413691851217404781740663Ratregion
5079108RH1407401701226211642621615Ratregion
5071146RH1349141951226001172600306Ratregion
5073542RH1374961871274670647467251Ratregion
5073688RH1375811551217417051741860Ratregion
5071936RH1353702001223986212398816Ratregion
5071608RH1351801941252583215258515Ratregion
5071888RH1353432131228894592889672Ratregion
5065018BF4054852081276924127692620Ratregion
5066850AU0481142661261957406196006Ratregion
5068542AU0470831521216225951622747Ratregion
5070005RH94413881274663757466463Ratregion
5070307RH1261192201226126182612839Ratregion
5063534BF4043221841258750995875283Ratregion
5063540BE1077631861248525964852782Ratregion
5065238BE1212541601250317695031929Ratregion
5062174BE1128792151250545615054776Ratregion
5062620BF4035382151249589724959187Ratregion
5062784AW5344181671274286137428780Ratregion
5062850BE1130361681267036246703792Ratregion
5062950BF410097941267814656781559Ratregion
5063316BE1075101531266751996675352Ratregion
5084282AI6000711341254099955410129Ratregion
5082037BF4091781601253881585388320Ratregion
5087907Gsh11491278807897880938Ratregion
5089849AU04939918912956249956438Ratregion
5089971AU0494732081222788092279017Ratregion
5083571BI2762541741267000416700215Ratregion
5088369AU0485281361212684021268538Ratregion
5090773AU0499552031264766146476817Ratregion
5090773AU0499552031264765626476817Ratregion
5085090AW5331631501283653078365458Ratregion
5085705BQ1993852161227157262715942Ratregion
5090059AU0495261721264818496482021Ratregion
5090183AU0496002571260037696004027Ratregion
5080772RH1417731501267085876708737Ratregion
5081024RH1419202121280694948069706Ratregion
5082871BF3903011571212701831270340Ratregion
5081170RH1420052071245226554522859Ratregion
5083053BF3907121551281372228137377Ratregion
5083199BF3909751761273877107387886Ratregion
5083899AA8925781211256133655613486Ratregion
5502657RH1264922331216993991700176Ratregion
5504766PMC88885P11191215645651564684Ratregion
5506064UniSTS:4982644101226439552644365Ratregion
5506413UniSTS:4791876001231177233118323Ratregion
5499695Pcp21821216817551682967Ratregion
5499659MARC_6763-6764:992007406:11251276163287616453Ratregion
5499907UniSTS:2353742171258248285825045Ratregion
5501648UniSTS:26548815561276818907683447Ratregion
5506600Flt101274464277448109Ratregion
Position Markers

Flank 1: (D12Rat57)
Rat AssemblyChrPosition (strand)Source
mRatBN7.212797,729 - 797,847 (+)MAPPER
Rnor_6.0121,258,139 - 1,258,256NCBI
Rnor_5.0121,236,564 - 1,236,681UniSTS
RGSC_v3.4123,438,582 - 3,438,700RGD
RGSC_v3.4123,438,583 - 3,438,700UniSTS
RGSC_v3.1123,438,582 - 3,438,700RGD
Celera122,500,821 - 2,500,938UniSTS
SHRSP x BN Map122.13RGD
SHRSP x BN Map122.13UniSTS
Peak: (D12Rat59)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2123,906,969 - 3,907,152 (-)MAPPER
Rnor_6.0125,406,094 - 5,406,276NCBI
Rnor_5.0127,519,792 - 7,519,974UniSTS
RGSC_v3.4124,864,404 - 4,864,585RGD
RGSC_v3.412155,313 - 155,496RGD
RGSC_v3.4124,864,405 - 4,864,585UniSTS
RGSC_v3.412155,314 - 155,496UniSTS
RGSC_v3.1124,864,215 - 4,864,623RGD
Celera125,959,333 - 5,959,515UniSTS
SHRSP x BN Map125.62UniSTS
SHRSP x BN Map125.62RGD
Flank 2: (D12Arb2)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2128,525,423 - 8,525,593 (+)MAPPER
Rnor_6.01210,256,890 - 10,257,059NCBI
Rnor_5.01212,361,595 - 12,361,764UniSTS
Celera1210,340,887 - 10,341,056UniSTS
RH 3.4 Map12110.7UniSTS
RH 3.4 Map12110.7RGD
RH 2.0 Map1288.7RGD
SHRSP x BN Map1211.64RGD
Cytogenetic Map12p11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)1219318387Rat
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)127977298525593Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12390696910373166Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12683319017870186Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general this region spans 12 Mb 7327193
qtl_general inducing agent:50mg/kg body wt of N-Methyl-N-Nitrosourea (NMU) 7327193
qtl_general syntenic to human chr 13q12-13q13 7327193
qtl_general measuring method: 50-55 days old females were given NMU and 30% fat diet; weekly palpatation was done for tumor formation, number and latency of tumors was recorded 7327193