Pilrb-ps1 (paired immunoglobin-like type 2 receptor beta, pseudogene 1) - Rat Genome Database

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Gene: Pilrb-ps1 (paired immunoglobin-like type 2 receptor beta, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Pilrb-ps1 (Ensembl: LOC100910801)
Name: paired immunoglobin-like type 2 receptor beta, pseudogene 1 (Ensembl:paired immunoglobulin-like type 2 receptor alpha-like)
RGD ID: 6496729
Description:
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: LOC100910801; LOC108348155; paired immunoglobulin-like type 2 receptor alpha-like; paired immunoglobulin-like type 2 receptor beta; paired immunoglobulin-like type 2 receptor beta-2
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81222,990,576 - 22,996,529 (-)NCBIGRCr8
mRatBN7.21218,601,156 - 18,607,655 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01221,659,175 - 21,670,430 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1221,661,512 - 21,670,269 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01223,689,924 - 23,691,274 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1220,656,789 - 20,663,962 (-)NCBICelera
Cytogenetic Map12q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



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Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


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Variants in Pilrb-ps1
167 total Variants


Assembly: Rnor_6.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
12 21661963 21661964 T C snv LEXF2B/Stm (2019), F344/NCrl (2019), FXLE18/Stm (2020) View more Information
12 21669513 21669514 A G snv LH/MavRrrcAek (2020), HXB4/IpcvMcwi (2020) View more Information
12 21669521 21669522 T A snv LH/MavRrrcAek (2020), HXB4/IpcvMcwi (2020) View more Information
12 21669544 21669545 C T snv MR/N (MCW) View more Information
12 21669639 21669640 G C snv ACI/EurMcwi (MCW), GK/FarMcwi (2019), F344/Stm (2019), BXH3/CubMcwi (2020), LEW/Crl (2019), SR/JrHsd (MCW), WKY/N (2020), SHRSP/A3NCrl (2019), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LL/MavRrrcAek (2020), LEXF4/Stm (2020), LEXF2B/Stm (2019) View more Information
12 21669670 21669671 G A snv COP/CrCrl (MCW & UW) View more Information
12 21669674 21669675 C A snv COP/CrCrl (MCW & UW) View more Information
12 21669723 21669724 C T snv M520/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), SS/JrHsdMcwi (MCW), SBN/Ygl (MCW), M520/NRrrcMcwi (2019), LN/MavRrrcAek (2020), LL/MavRrrcAek (2020), LH/MavRrrcAek (2020), LEXF4/Stm (2020), LEXF3/Stm (2020), LEXF2B/Stm (2019), LEW/Crl (2019), GK/FarMcwi (2019), FHH/EurMcwi (2019), F344/Stm (2019), F344/NCrl (2019), F344/DuCrl (2019), BXH3/CubMcwi (2020), BXH2/CubMcwi (2020), ACI/N (2020), ACI/EurMcwi (2019), SBH/Ygl (MCW), GH/OmrMcwi (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), CDR, SR/JrHsd (MCW) View more Information
12 21669765 21669766 T A snv ACI/EurMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), BXH3/CubMcwi (2020), F344/NCrl (2019), FHH/EurMcwi (2019), LEW/Crl (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WN/N (2020), CDR, FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SR/JrHsd (MCW), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/Stm (2019), GK/FarMcwi (2019), LEXF4/Stm (2020), LH/MavRrrcAek (2020), WKY/N (2020) View more Information
12 21669768 21669769 T G snv ACI/N (2020), WKY/N (2020), WKY/NCrl (2019), SS/JrHsdMcwi (2019), SR/JrHsd (2020), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), PVG/Seac (2019), MWF/Hsd (2019), MR/N (2020), M520/N (2020), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LL/MavRrrcAek (2020), LH/MavRrrcAek (2020), LEXF4/Stm (2020), LEXF3/Stm (2020), LEXF2B/Stm (2019), LEW/Crl (2019), HXB4/IpcvMcwi (2020), GK/FarMcwi (2019), FXLE18/Stm (2020), FHH/EurMcwi (2019), F344/Stm (2019), F344/N (2020), F344/NCrl (2019), F344/DuCrl (2019), ACI/EurMcwi (MCW), ACI/EurMcwi (2019), WN/N (2020), BUF/N (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019) View more Information
12 21669802 21669803 G A snv SBH/Ygl (MCW), SR/JrHsd (MCW) View more Information
12 21669817 21669818 C T snv LN/MavRrrcAek (2020), ACI/N (2020), SS/JrHsdMcwi (2019), SR/JrHsd (2020), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), PVG/Seac (2019), MWF/Hsd (2019), MR/N (2020), M520/N (2020), M520/NRrrcMcwi (2019), ACI/EurMcwi (2019), LL/MavRrrcAek (2020), LEXF3/Stm (2020), LEXF2B/Stm (2019), LEW/Crl (2019), HXB4/IpcvMcwi (2020), FXLE18/Stm (2020), F344/Stm (2019), F344/NCrl (2019), BXH3/CubMcwi (2020), WKY/NCrl (2019), FHH/EurMcwi (2019), BUF/N (2020) View more Information
12 21669844 21669845 G T snv M520/NRrrcMcwi (2019), ACI/EurMcwi (2019) View more Information
12 21670199 21670200 G C snv MWF/Hsd (2019), MR/N (2020), LEW/Crl (2019), F344/Stm (2019), ACI/EurMcwi (2019), SHR/OlalpcvMcwi (2019) View more Information
12 21670215 21670216 G T snv F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), M520/NRrrcMcwi (2019), DA/OlaHsd (2019), F344/N (2020), LEXF10A/StmMcwi (2020), F344/NCrl (2019), F344/DuCrl (2019), BXH3/CubMcwi (2020), BXH2/CubMcwi (2020), BUF/N (2020), ACI/EurMcwi (2019), ACI/N (2020) View more Information

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:48
Interacting mature miRNAs:48
Transcripts:ENSRNOT00000074863
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 48 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
61443Btemp2Thermal response to stress QTL 23.30.000094body temperature trait (VT:0005535)core body temperature (CMO:0001036)121502518320794014Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat

1 to 10 of 48 rows



alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 26 42 45 17 22 17 6 80 49 10 5 19 28


RefSeq Transcripts XM_008769104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000064787   ⟹   ENSRNOP00000061816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1221,356,475 - 21,362,205 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000074863   ⟹   ENSRNOP00000064190
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1221,661,512 - 21,670,269 (-)Ensembl
RefSeq Acc Id: XM_008769104   ⟹   XP_008767326
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01221,659,175 - 21,670,430 (-)NCBI
Sequence:
Name Modeler Protein Id AA Range Protein Structure
AF-M0R4B0-F1-model_v2 AlphaFold M0R4B0 1-223 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 9 of 9 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-19739 BioCyc
Ensembl Genes ENSRNOG00000046696 Ensembl
  ENSRNOG00000050981 Ensembl
  ENSRNOG00000088735 ENTREZGENE
NCBI Gene LOC100910801 ENTREZGENE
PhenoGen Pilrb-ps1 PhenoGen
RatGTEx ENSRNOG00000046696 RatGTEx
  ENSRNOG00000050981 RatGTEx
  ENSRNOG00000088735 RatGTEx
1 to 9 of 9 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Pilrb-ps1  paired immunoglobin-like type 2 receptor beta, pseudogene 1  LOC100910801  paired immunoglobulin-like type 2 receptor alpha-like  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC100910801  paired immunoglobulin-like type 2 receptor alpha-like  LOC108348155  paired immunoglobulin-like type 2 receptor beta-2  Data merged from RGD:11434352 737654 PROVISIONAL
2016-08-02 LOC108348155  paired immunoglobulin-like type 2 receptor beta-2      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC100910801  paired immunoglobulin-like type 2 receptor alpha-like      Symbol and Name status set to provisional 70820 PROVISIONAL