Akap17a (A-kinase anchoring protein 17A)

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Gene: Akap17a (A-kinase anchoring protein 17A) Rattus norvegicus

Analyze

Symbol:

Akap17a

Name:

A-kinase anchoring protein 17A

RGD ID:

1564640

Description:

Predicted to have protein kinase A binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to localize to cytosol and nuclear speck. Orthologous to human AKAP17A (A-kinase anchoring protein 17A); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

A kinase (PRKA) anchor protein 17A; A-kinase anchor protein 17A; hypothetical protein LOC288526; LOC288526; similar to DNA segment on chromosome X and Y (unique) 155 expressed sequence isoform 1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	AKAP17A (A-kinase anchoring protein 17A)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Akap17b (A kinase (PRKA) anchor protein 17B)	HGNC	Treefam, NCBI, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Akap17a (A-kinase anchoring protein 17A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	AKAP17A (A-kinase anchoring protein 17A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	AKAP17A (A-kinase anchoring protein 17A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Akap17a (A-kinase anchoring protein 17A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	AKAP17A (A-kinase anchoring protein 17A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	AKAP17A (A-kinase anchoring protein 17A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Akap17a (A-kinase anchoring protein 17A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	AKAP17A (A-kinase anchoring protein 17A)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	akap17a (A kinase (PRKA) anchor protein 17A)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Xe7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	cux-7	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	12	16,310,427 - 16,315,166 (-)	NCBI
Rnor_6.0 Ensembl	12	18,526,422 - 18,531,161 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	12	18,527,116 - 18,531,780 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	12	20,512,066 - 20,516,849 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	16,818,052 - 16,822,097 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	12	18,060,139 - 18,064,184 (-)	NCBI		Celera
Cytogenetic Map	12	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-methylcholine (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

4-hydroxyphenyl retinamide (ISO)

acetazolamide (ISO)

amphetamine (EXP)

benzene (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

cerium trichloride (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dibutyl phthalate (EXP,ISO)

diethylstilbestrol (ISO)

endosulfan (EXP)

estriol (ISO)

flutamide (EXP)

folic acid (ISO)

mercury dichloride (EXP)

ochratoxin A (EXP)

phenobarbital (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

Soman (EXP)

sunitinib (ISO)

tetrachloromethane (EXP)

thapsigargin (ISO)

tungsten (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of RNA splicing (IBA,ISO)

Cellular Component

cytosol (IBA,ISO)

nuclear speck (IBA,ISO)

nucleus (ISO)

Molecular Function

nucleic acid binding (IEA)

protein binding (ISO)

protein kinase A binding (IBA,ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated data pipeline
3.	RGD automated import pipeline for gene-chemical interactions
4.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:16982639	PMID:19840947	PMID:22681889

Genomics

Comparative Map Data

Akap17a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	12	16,310,427 - 16,315,166 (-)	NCBI
Rnor_6.0 Ensembl	12	18,526,422 - 18,531,161 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	12	18,527,116 - 18,531,780 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	12	20,512,066 - 20,516,849 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	16,818,052 - 16,822,097 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	12	18,060,139 - 18,064,184 (-)	NCBI		Celera
Cytogenetic Map	12	q11	NCBI

AKAP17A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	X	1,591,604 - 1,602,520 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	X	1,591,604 - 1,602,520 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38	Y	1,591,604 - 1,602,520 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	Y	1,660,497 - 1,671,413 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	X	1,710,486 - 1,721,413 (+)	ENTREZGENE	GRCh37	GRCh37	hg19	GRCh37
GRCh37	X	1,710,497 - 1,721,413 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	Y	1,660,486 - 1,671,413 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	1,670,486 - 1,681,413 (+)	NCBI	NCBI36		hg18	NCBI36
Build 36	Y	1,670,486 - 1,681,413 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	X	5,988,649 - 5,999,070 (+)	NCBI
Cytogenetic Map	X	;Y	NCBI
CHM1_1	X	1,741,073 - 1,751,812 (+)	NCBI		CHM1_1

Akap17b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	35,871,826 - 35,909,117 (-)	NCBI	GRCm39		mm39
GRCm38	X	36,608,173 - 36,645,465 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	36,608,314 - 36,645,395 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	34,148,178 - 34,185,409 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	X	33,039,630 - 33,076,541 (-)	NCBI			mm8
Celera	X	23,332,235 - 23,369,468 (-)	NCBI		Celera
Cytogenetic Map	X	A3.3	NCBI

Akap17a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955499	1,119,658 - 1,130,250 (+)	NCBI	ChiLan1.0	ChiLan1.0

AKAP17A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	X	1,721,734 - 1,730,701 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	1,721,753 - 1,729,787 (+)	Ensembl	panpan1.1		panPan2

AKAP17A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	1,031,392 - 1,042,457 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Akap17a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936644	3,716,622 - 3,727,186 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

AKAP17A
(Sus scrofa - pig)

No map positions available.

AKAP17A
(Chlorocebus sabaeus - African green monkey)

No map positions available.

Akap17a
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624834	731,491 - 737,317 (+)	NCBI

Position Markers

RH131804

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	12	18,527,116 - 18,527,296	NCBI	Rnor6.0
Rnor_5.0	12	20,512,070 - 20,512,250	UniSTS	Rnor5.0
RGSC_v3.4	12	16,818,052 - 16,818,232	UniSTS	RGSC3.4
Celera	12	18,060,139 - 18,060,319	UniSTS
RH 3.4 Map	12	255.7	UniSTS
Cytogenetic Map	12	q11	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312418	Kidm41	Kidney mass QTL 41	3.7	0.0001	kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	12	1	22650917	Rat
10450854	Stl34	Serum triglyceride level QTL 34	3.5	0.05	blood LDL triglyceride amount (VT:0010699)	blood lipoprotein triglyceride level (CMO:0002685)	12	1	22853017	Rat
10755457	Coatc14	Coat color QTL 14		0.01759	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	12	1	23035872	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	23758197	Rat
1581516	Cm56	Cardiac mass QTL 56	4.2	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	1	30749723	Rat
1598855	Bp294	Blood pressure QTL 294	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	1	36919844	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	38334225	Rat
9590086	Insglur6	Insulin/glucose ratio QTL 6	18.97	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	12	150810	45150810	Rat
9590147	Scort7	Serum corticosterone level QTL 7	13.61	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	12	150810	45150810	Rat
7411545	Bw128	Body weight QTL 128	5.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	150810	45150810	Rat
7411586	Foco5	Food consumption QTL 5	5.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	150810	45150810	Rat
7411660	Foco28	Food consumption QTL 28	10.9	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	150810	45150810	Rat
7411595	Foco9	Food consumption QTL 9	4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	150810	45150810	Rat
8694179	Bw150	Body weight QTL 150	2.9	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	150810	45150810	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	492578	45492578	Rat
737979	Pia22	Pristane induced arthritis QTL 22	53.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2475687	47475687	Rat
634351	Apr5	Acute phase response QTL 5	6.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	12	2513442	47513442	Rat
2302042	Pia38	Pristane induced arthritis QTL 38	3.5	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	2513442	47513442	Rat
634350	Apr4	Acute phase response QTL 4	6		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	4210051	49210051	Rat
1600391	Edcs2	Endometrial carcinoma susceptibility QTL2	3.5	0.01	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	12	8249608	20590080	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	8954593	27911196	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	9223626	52716770	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	9223626	52716770	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	9223626	52716770	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	9223626	52716770	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	9223626	52716770	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	9223626	52716770	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	9223630	52716770	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	9789834	52716770	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	10175889	31975590	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	10256890	31723732	Rat
1300157	Rf21	Renal function QTL 21	4.4		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	12	11764995	37522089	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	13127211	27285590	Rat
1331755	Bp219	Blood pressure QTL 219	3.041		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	13127211	31723688	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	13127211	50320041	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	14419775	52716770	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15021986	52716770	Rat
7204484	Bp358	Blood pressure QTL 358		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	15085585	22283507	Rat
61416	Pia4	Pristane induced arthritis QTL 4	8.4		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	12	15714609	35964508	Rat
61421	Cia12	Collagen induced arthritis QTL 12	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	15714609	41291738	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	15908900	52716770	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	15908900	52716770	Rat
61443	Btemp2	Thermal response to stress QTL 2	3.3	0.000094	body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	12	17114770	23839390	Rat
631543	Bp83	Blood pressure QTL 83	5.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	17185580	44098244	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	17960865	38409001	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	18342477	52716770	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	18342477	52716770	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	91
Count of miRNA genes:	81
Interacting mature miRNAs:	86
Transcripts:	ENSRNOT00000037829
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	34	39	32	14	32		3	66	27	38	10
Low		9	18	9	5	9	8	8	8	8	3	1	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001127246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC100662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC166722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000037829 ⟹ ENSRNOP00000032594

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	18,527,119 - 18,531,161 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000078999 ⟹ ENSRNOP00000070153

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	18,526,422 - 18,530,724 (-)	Ensembl

RefSeq Acc Id:

NM_001127246 ⟹ NP_001120718

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	16,310,434 - 16,314,479 (-)	NCBI
Rnor_6.0	12	18,527,116 - 18,531,161 (-)	NCBI
Rnor_5.0	12	20,512,066 - 20,516,849 (-)	NCBI
RGSC_v3.4	12	16,818,052 - 16,822,097 (-)	RGD
Celera	12	18,060,139 - 18,064,184 (-)	RGD

Sequence:

show sequence

GTGAACGAAACGCCTGCGGGGACTTTACCAAAAGGCCTTAGACGGTGGCGAGGACTAGAGTCTG
GGCACCGGAAGCTAAGATGTTGTGACGTCACCATGAGCATCACTACATACTGATATCACTGCAC
CATCCCCGCTCCCCCAGACTTGCTGGCCATGTCCTCAGCCACCATCGTGCACGACCCCTCGGAG
GCGGTGCCCCTGTGCCCGGCGCTGGGCCTGTACCTGAAGCCAATCGCGCGGGTGACAATCTCGG
TGTCGCTGCCCCCTCCGCCCCCAGCTCCGCCCCCTTCGCCTTCCTCGACGTCCCCACCCCCGCG
TGCGCCAAGTCGTGCAGTGTCAAACTGGGAGGTGATGGAGGGACTGCGGGCGATGGCACAGGGG
GCACGAGCGCCGCTGTCATCACTGCGCCTGGCCCGGGGCGGCCCTGAGGTCGTGCGCTTTGAGG
GCGAGGTCGAGAACCGGGCGCTTGTGCGTCCCGCACTCGCTGGCCTGGACGGCAAGACTATGAT
GCTCAGCGGCCTCCCCCATGGCCTGCGTGTAAGCGCCGCTGAGGCCACGCCCCCACCCACAGAT
GACCCCGCCCACCCTCATGACACCATCCACCTTCAGGGCCTGCCCTGCCGCTGGTTTGCGCCCC
GTGGGGGCAGTGGCGGGGATGAGGCTGGAGGCATTTCTTCCCCTGGTGGCATTGCCTCAGCAGA
GAGGCCCAGCGAGGCTCTCCTGCGCCAGGCTTTCGGGGCGTTTGGTGAGATCCGCCATGTGGAC
ATTCCCATGCTGGACCCTTACCTTGGTGAGGACGGCAGCCATGGCGGGGGCGGGGGCGGGCGGC
TCCGCTTCGAGGCCTACGTTCAGTACCGAGAGCGTGATGCCTACGCCCGTGCCATGGCTGCCCT
GCGTGGTGCTAAGCTCATGTTTAGGGGCACGGACGGCAAAGCTGTGGCCTGCGGCATCAAGGTG
ACATCAGATGCCACACAGCACCTGAGCGAGGCTTCGATCAGACGCCGGCAGCTGGAGCGGCAGA
AACTACAGGAACTTGAGCAGCGGCGTGAAGAGCAGAAGCGGAAGGAGCGTGAGGATGAGGCGCG
GCGGCGGGCAGGCCAGCGGAAGCAGCGGGAGGCAGAGCAGCAACAACGGGCACGGCGTCGGGAG
GAGAAGCTTCGGCGCAGAGAGGCACGGCAACGAGCACGGAAGAGACGAGGCCGACGTCGAGAGG
AGGAGGAGGAGGAGGAGGCAGAGCCCCAGCCTGTGTTGGGGCGTGAGGAAGAGGAAGGTGCAGA
GCCCCGTCGGCTACTGCTCGCCCAGCGCAACCTGCAGTCTGTGCGGCTCATTGCTGCCCTGCTT
GCCCGCGCTGAAGCCGCCAGACGCCGCCAGCGTGAGCAGAGCGAGGAGCGACGTCGCCATGCAA
AGGAGGCAGAGCTTCGGCGCCAGCAGGAGGCAGAGCTTCGGCGTCAGAGGGAGGCAGAGCTACG
CCGAGTGGAAGAGGAGAAGCGGCGGGCACTGGGACTGCAACGTCGGGAGCGTGAGCTCCGACAT
CGCCTCCTTGCCCTGCTGCTTGCCCGGGGGCCTGGCTTGGGGCGTCTAGTGGGCGGAGCCGGGA
CAGGAAGTGACGTTTTGGGGGCTGGGAACAGCAAGATGGCTGTGGGGAGTGGCCATGGGGAGGC
AGGACAAAGCCAGACAATGACAGGAAGTGAAATCAGGGGAGATGGAAGGGAGAATATGAAGACA
GGAAGTGATGTGGCTACCTCAGGAAATGGCCACATTGACAGAGAAAATGAGAAAATAAAGACAG
GAAGTGGGATCCCAGCCACAGGAGGTGGTACTGGGGACCCAAGAGGTGCGGACAAACAAACAGG
AAGTAGTGTCCAGCCGACAGGAAGTGATGCAAAGACAGGAAATGGTGCCAGAGGGACAGGAGGT
GGCCCGGGAAGGGACCCAATTGCAAAGACGTGGTCGGAAAATATGACGACAGGAAGTGGCAGCC
CCGAAACAGGAAGTGGTGTGGCCAAGATGGCGACAGTAAGTGCTAGCAATGAGACCGAAAGTTC
ATCTGCCAAGCTCAAAGCCATGCCCAGTTCCTGTAGTGACCGGGAGAGATGTGGCCTTGAGGGC
CGCCCGTCCTGGCATTCCCGTGACTTTGGGGGCAGTTCAGGACAGTCTAGAAGCCGTGAAGGCA
GTGAGCGCCGACGCCCCCACGAGGAAGAGGACGGCGGTGGGCGGGACCGGAAGCGCGGACACCG
CCATCGTGAGGACCGTGGTCGCTCGAGGTCTCGATCCCCGCGGCGCCGGTGACCGACCTGCCCA
AATCATGGGACTTACTAGATGACCCAGAAGTTCCGCCCCGAGGACTGTGAAAGTCATAGGCTCC
CTGGCGGCCATTATGGATTTTTTTCAAACCTCTGAATGCGGAGTTGAGTTTTCGGTTTCGGGGG
CGGGACTTGGGTGTGACATGAGTGGCGTATTGTGTGGCCATGCTGAATAAACGCCTGGAGTTGG
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006248998 ⟹ XP_006249060

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	16,310,427 - 16,315,166 (-)	NCBI
Rnor_6.0	12	18,527,118 - 18,531,780 (-)	NCBI
Rnor_5.0	12	20,512,066 - 20,516,849 (-)	NCBI

Sequence:

show sequence

CACATGGATACGCTAGGAATCACGGGATTGCCCGCCGCGCTACGCGGGCCGCGCTGGCTGACGA
CGAGTCGCATAGTTTATGACCTCACGCATAGCGGACAGAGTCTGCTCTTTGCTGAGCCTAGTTG
CTTTGTTGTGACATCCGAGCGAAGGCGACGAAGGGGTCACCAGTGCTGACCCCGCAGGCCACTG
TCACGGAGCCTAAGCGCAAAAGGGAACTGGGAGGGCGGAAGAGCGTCTACGCATGCGCGCCCTG
CTGCTGTTGCTGTTTCTTGAGGCGGGGGTCAGAGGTGAGCGGTGCCGGAAGTTCCCTTTGTGCT
CCTCCGCTTTCCCGCCACAGGAGGGCGGTTGAAAGCGGCTGACAGACGTTGTCTCCACGGAGGA
AACGGGAGGGAGTCGATCGTATTTGACGTCACCGGTGAGCGCCTTGGTCACAGGATTATCGCCC
TGTTGACCAAGGAGCCGCAACCTCCTGTGTCTGGGAGCGAGAGCAAAAACCTGCGCGTGCGCGC
TGAGTGCCGCTGATTCTGCTGGTGATCCCTGTTTCCGGTATCCCGGATCAGAGGTGACCGGGAC
CGGAAGTGGCCATTTAAACTACGAAAATCAGTTGTCAGCGGCCGTGAACGAAACGCCTGCGGGG
ACTTTACCAAAAGGCCTTAGACGGTGGCGAGGACTAGAGTCTGGGCACCGGAAGCTAAGGTGCG
TCACGGGAGCCCCGGGAATGGCTACGAAGGGTAACGGGGCAGAGTGACGAGGCCGCTGCGGAGC
ACAGGGGTGGAGCTTAGAGGAGATGTTGTGACGTCACCATGAGCATCACTACATACTGATATCA
CTGCACCATCCCCGCTCCCCCAGACTTGCTGGCCATGTCCTCAGCCACCATCGTGCACGACCCC
TCGGAGGCGGTGCCCCTGTGCCCGGCGCTGGGCCTGTACCTGAAGCCAATCGCGCGGGTGACAA
TCTCGGTGTCGCTGCCCCCTCCGCCCCCAGCTCCGCCCCCTTCGCCTTCCTCGACGTCCCCACC
CCCGCGTGCGCCAAGTCGTGCAGTGTCAAACTGGGAGGTGATGGAGGGACTGCGGGCGATGGCA
CAGGGGGCACGAGCGCCGCTGTCATCACTGCGCCTGGCCCGGGGCGGCCCTGAGGTCGTGCGCT
TTGAGGGCGAGGTCGAGAACCGGGCGCTTGTGCGTCCCGCACTCGCTGGCCTGGACGGCAAGAC
TATGATGCTCAGCGGCCTCCCCCATGGCCTGCGTGTAAGCGCCGCTGAGGCCACGCCCCCACCC
ACGGATGACCCCGCCCACCCTCATGACACCATCCACCTTCAGGGCCTGCCCTGCCGCTGGTTTG
CGCCCCGTGGGGGCAGTGGCGGGGATGAGGCTGGAGGCATTTCTTCCCCTGGTGGCATTGCCTC
AGCAGAGAGGCCCAGCGAGGCTCTCCTGCGCCAGGCTTTCGGGGCGTTTGGTGAGATCCGCCAT
GTGGACATTCCCATGCTGGACCCTTACCTTGGTGAGGACGGCAGCCATGGCGGGGGCGGGGGCG
GGCGGCTCCGCTTCGAGGCCTACGTTCAGTACCGAGAGCGTGATGCCTACGCCCGTGCCATGGC
TGCCCTGCGTGGTGCTAAGCTCATGTTTAGGGGCACGGACGGCAAAGCTGTGGCCTGCGGCATC
AAGGTGACATCAGATGCCACACAGCACCTGAGCGAGGCTTCGATCAGACGCCGGCAGCTGGAGC
GGCAGAAACTACAGGAACTTGAGCAGCGGCGTGAAGAGCAGAAGCGGAAGGAGCGTGAGGATGA
GGCGCGGCGGCGGGCAGGCCAGCGGAAGCAGCGGGAGGCAGAGCAGCAACAACGGGCACGGCGT
CGGGAGGAGAAGCTTCGGCGCAGAGAGGCACGGCAACGAGCACGGAAGAGACGAGGCCGACGTC
GAGAGGAGGAGGAGGAGGAGGAGGAGGCAGAGCCCCAGCCTGTGTTGGGGCGTGAGGAAGAGGA
AGGTGCAGAGCCCCGTCGGCTACTGCTCGCCCAGCGCAACCTGCAGTCTGTGCGGCTCATTGCT
GCCCTGCTTGCCCGCGCTGAAGCCGCCAGACGCCGCCAGCGTGAGCAGAGCGAGGAGCGACGTC
GCCATGCAAAGGAGGCAGAGCTTCGGCGCCAGCAGGAGGCAGAGCTTCGGCGTCAGAGGGAGGC
AGAGCTACGCCGAGTGGAAGAGGAGAAGCGGCGGGCACTGGGACTGCAACGTCGGGAGCGTGAG
CTCCGACATCGCCTCCTTGCCCTGCTGCTTGCCCGGGGGCCTGGCTTGGGGTGTCTAGTGGGCG
GAGCCGGGACAGGAAGTGACGTTTTGGGGGCTGGGAACAGCAAGATGGCTGTGGGGAGTGGCCA
TGGGGAGGCAGGACAAAGCCAGACAATGACAGGAAGTGAAATCAGGGGAGATGGAAGGGAGAAT
ATGAAGACAGGAAGTGATGTGGCTACCTCAGGAAATGGCCACATTGACAGAGAAAATGAGAAAA
TAAAGACAGGAAGTGGGATCCCAGCCACAGGAGGTGGTACTGGGGACCCAAGAGGTGCGGACAA
ACAAACAGGAAGTAGTGTCCAGCCGACAGGAAGTGATGCAAAGACAGGAAATGGTGCCAGAGGG
ACAGGAGGTGGCCCGGGAAGGGACCCAATTGCAAAGACGTGGTCGGAAAATATGACGACAGGAA
GTGGCAGCCCCGAAACAGGAAGTGGTGTGGCCAAGATGGCGACAGTAAGTGCTAGCAATGAGAC
CGAAAGTTCATCTGCCAAGCTCAAAGCCATGCCCAGTTCCTGTAGTGACCGGGAGAGATGTGGC
CTTGAGGGCCGCCCGTCCTGGCATTCCCGTGACTTTGGGGGCAGTTCAGGACAGTCTAGAAGCC
GTGAAGGCAGTGAGCGCCGACGCCCCCACGAGGAAGAGGACGGCGGTGGGCGGGACCGGAAGCG
CGGACACCGCCATCGTGAGGACCGTGGTCGCTCGAGGTCTCGATCCCCGCGGCGCCGGTGACCG
ACCTGCCCAAATCATGGGACTTACTAGATGACCCAGAAGTTCCGCCCCGAGGACTGTGAAAGTC
ATAGGCTCCCTGGCGGCCATTATGGATTTTTTTCAAACCTCTGAATGCGGAGTTGAGTTTTCGG
TTTCGGGGGCGGGACTTGGGTGTGACATGAGTGGCGTATTGTGTGGCCATGCTGAATAAACGCC
TGGAGTTGGA

hide sequence

RefSeq Acc Id:

XM_006248999 ⟹ XP_006249061

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	16,310,427 - 16,315,166 (-)	NCBI
Rnor_6.0	12	18,527,118 - 18,531,780 (-)	NCBI
Rnor_5.0	12	20,512,066 - 20,516,849 (-)	NCBI

Sequence:

show sequence

CACATGGATACGCTAGGAATCACGGGATTGCCCGCCGCGCTACGCGGGCCGCGCTGGCTGACGA
CGAGTCGCATAGTTTATGACCTCACGCATAGCGGACAGAGTCTGCTCTTTGCTGAGCCTAGTTG
CTTTGTTGTGACATCCGAGCGAAGGCGACGAAGGGGTCACCAGTGCTGACCCCGCAGGCCACTG
TCACGGAGCCTAAGCGCAAAAGGGAACTGGGAGGGCGGAAGAGCGTCTACGCATGCGCGCCCTG
CTGCTGTTGCTGTTTCTTGAGGCGGGGGTCAGAGGTGAGCGGTGCCGGAAGTTCCCTTTGTGCT
CCTCCGCTTTCCCGCCACAGGAGGGCGGTTGAAAGCGGCTGACAGACGTTGTCTCCACGGAGGA
AACGGGAGGGAGTCGATCGTATTTGACGTCACCGGTGAGCGCCTTGGTCACAGGATTATCGCCC
TGTTGACCAAGGAGCCGCAACCTCCTGTGTCTGGGAGCGAGAGCAAAAACCTGCGCGTGCGCGC
TGAGTGCCGCTGATTCTGCTGGTGATCCCTGTTTCCGGTATCCCGGATCAGAGGTGACCGGGAC
CGGAAGTGGCCATTTAAACTACGAAAATCAGTTGTCAGCGGCCGTGAACGAAACGCCTGCGGGG
ACTTTACCAAAAGGCCTTAGACGGTGGCGAGGACTAGAGTCTGGGCACCGGAAGCTAAGACTTG
CTGGCCATGTCCTCAGCCACCATCGTGCACGACCCCTCGGAGGCGGTGCCCCTGTGCCCGGCGC
TGGGCCTGTACCTGAAGCCAATCGCGCGGGTGACAATCTCGGTGTCGCTGCCCCCTCCGCCCCC
AGCTCCGCCCCCTTCGCCTTCCTCGACGTCCCCACCCCCGCGTGCGCCAAGTCGTGCAGTGTCA
AACTGGGAGGTGATGGAGGGACTGCGGGCGATGGCACAGGGGGCACGAGCGCCGCTGTCATCAC
TGCGCCTGGCCCGGGGCGGCCCTGAGGTCGTGCGCTTTGAGGGCGAGGTCGAGAACCGGGCGCT
TGTGCGTCCCGCACTCGCTGGCCTGGACGGCAAGACTATGATGCTCAGCGGCCTCCCCCATGGC
CTGCGTGTAAGCGCCGCTGAGGCCACGCCCCCACCCACGGATGACCCCGCCCACCCTCATGACA
CCATCCACCTTCAGGGCCTGCCCTGCCGCTGGTTTGCGCCCCGTGGGGGCAGTGGCGGGGATGA
GGCTGGAGGCATTTCTTCCCCTGGTGGCATTGCCTCAGCAGAGAGGCCCAGCGAGGCTCTCCTG
CGCCAGGCTTTCGGGGCGTTTGGTGAGATCCGCCATGTGGACATTCCCATGCTGGACCCTTACC
TTGGTGAGGACGGCAGCCATGGCGGGGGCGGGGGCGGGCGGCTCCGCTTCGAGGCCTACGTTCA
GTACCGAGAGCGTGATGCCTACGCCCGTGCCATGGCTGCCCTGCGTGGTGCTAAGCTCATGTTT
AGGGGCACGGACGGCAAAGCTGTGGCCTGCGGCATCAAGGTGACATCAGATGCCACACAGCACC
TGAGCGAGGCTTCGATCAGACGCCGGCAGCTGGAGCGGCAGAAACTACAGGAACTTGAGCAGCG
GCGTGAAGAGCAGAAGCGGAAGGAGCGTGAGGATGAGGCGCGGCGGCGGGCAGGCCAGCGGAAG
CAGCGGGAGGCAGAGCAGCAACAACGGGCACGGCGTCGGGAGGAGAAGCTTCGGCGCAGAGAGG
CACGGCAACGAGCACGGAAGAGACGAGGCCGACGTCGAGAGGAGGAGGAGGAGGAGGAGGAGGC
AGAGCCCCAGCCTGTGTTGGGGCGTGAGGAAGAGGAAGGTGCAGAGCCCCGTCGGCTACTGCTC
GCCCAGCGCAACCTGCAGTCTGTGCGGCTCATTGCTGCCCTGCTTGCCCGCGCTGAAGCCGCCA
GACGCCGCCAGCGTGAGCAGAGCGAGGAGCGACGTCGCCATGCAAAGGAGGCAGAGCTTCGGCG
CCAGCAGGAGGCAGAGCTTCGGCGTCAGAGGGAGGCAGAGCTACGCCGAGTGGAAGAGGAGAAG
CGGCGGGCACTGGGACTGCAACGTCGGGAGCGTGAGCTCCGACATCGCCTCCTTGCCCTGCTGC
TTGCCCGGGGGCCTGGCTTGGGGTGTCTAGTGGGCGGAGCCGGGACAGGAAGTGACGTTTTGGG
GGCTGGGAACAGCAAGATGGCTGTGGGGAGTGGCCATGGGGAGGCAGGACAAAGCCAGACAATG
ACAGGAAGTGAAATCAGGGGAGATGGAAGGGAGAATATGAAGACAGGAAGTGATGTGGCTACCT
CAGGAAATGGCCACATTGACAGAGAAAATGAGAAAATAAAGACAGGAAGTGGGATCCCAGCCAC
AGGAGGTGGTACTGGGGACCCAAGAGGTGCGGACAAACAAACAGGAAGTAGTGTCCAGCCGACA
GGAAGTGATGCAAAGACAGGAAATGGTGCCAGAGGGACAGGAGGTGGCCCGGGAAGGGACCCAA
TTGCAAAGACGTGGTCGGAAAATATGACGACAGGAAGTGGCAGCCCCGAAACAGGAAGTGGTGT
GGCCAAGATGGCGACAGTAAGTGCTAGCAATGAGACCGAAAGTTCATCTGCCAAGCTCAAAGCC
ATGCCCAGTTCCTGTAGTGACCGGGAGAGATGTGGCCTTGAGGGCCGCCCGTCCTGGCATTCCC
GTGACTTTGGGGGCAGTTCAGGACAGTCTAGAAGCCGTGAAGGCAGTGAGCGCCGACGCCCCCA
CGAGGAAGAGGACGGCGGTGGGCGGGACCGGAAGCGCGGACACCGCCATCGTGAGGACCGTGGT
CGCTCGAGGTCTCGATCCCCGCGGCGCCGGTGACCGACCTGCCCAAATCATGGGACTTACTAGA
TGACCCAGAAGTTCCGCCCCGAGGACTGTGAAAGTCATAGGCTCCCTGGCGGCCATTATGGATT
TTTTTCAAACCTCTGAATGCGGAGTTGAGTTTTCGGTTTCGGGGGCGGGACTTGGGTGTGACAT
GAGTGGCGTATTGTGTGGCCATGCTGAATAAACGCCTGGAGTTGGA

hide sequence

RefSeq Acc Id:

XM_006249000 ⟹ XP_006249062

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	12	16,310,427 - 16,315,166 (-)	NCBI
Rnor_6.0	12	18,527,118 - 18,531,780 (-)	NCBI
Rnor_5.0	12	20,512,066 - 20,516,849 (-)	NCBI

Sequence:

show sequence

CACATGGATACGCTAGGAATCACGGGATTGCCCGCCGCGCTACGCGGGCCGCGCTGGCTGACGA
CGAGTCGCATAGTTTATGACCTCACGCATAGCGGACAGAGTCTGCTCTTTGCTGAGCCTAGTTG
CTTTGTTGTGACATCCGAGCGAAGGCGACGAAGGGGTCACCAGTGCTGACCCCGCAGGCCACTG
TCACGGAGCCTAAGCGCAAAAGGGAACTGGGAGGGCGGAAGAGCGTCTACGCATGCGCGCCCTG
CTGCTGTTGCTGTTTCTTGAGGCGGGGGTCAGAGGTGAGCGGTGCCGGAAGTTCCCTTTGTGCT
CCTCCGCTTTCCCGCCACAGGAGGGCGGTTGAAAGCGGCTGACAGACGTTGTCTCCACGGAGGA
AACGGGAGGGAGTCGATCGTATTTGACGTCACCGGTGAGCGCCTTGGTCACAGGATTATCGCCC
TGTTGACCAAGGAGCCGCAACCTCCTGTGTCTGGGAGCGAGAGCAAAAACCTGCGCGTGCGCGC
TGAGTGCCGCTGATTCTGCTGGTGATCCCTGTTTCCGGTATCCCGGATCAGAGGTGACCGGGAC
CGGAAGTGGCCATTTAAACTACGAAAATCAGTTGTCAGCGGCCGTGAACGAAACGCCTGCGGGG
ACTTTACCAAAAGGCCTTAGACGGTGGCGAGGACTAGAGTCTGGGCACCGGAAGCTAAGGTGCG
TCACGGGAGCCCCGGGAATGGCTACGAAGGGTAACGGGGCAGAGTGACGAGGCCGCTGCGGAGC
ACAGGGGTGGAGCTTAGAGGAGACTTGCTGGCCATGTCCTCAGCCACCATCGTGCACGACCCCT
CGGAGGCGGTGCCCCTGTGCCCGGCGCTGGGCCTGTACCTGAAGCCAATCGCGCGGGTGACAAT
CTCGGTGTCGCTGCCCCCTCCGCCCCCAGCTCCGCCCCCTTCGCCTTCCTCGACGTCCCCACCC
CCGCGTGCGCCAAGTCGTGCAGTGTCAAACTGGGAGGTGATGGAGGGACTGCGGGCGATGGCAC
AGGGGGCACGAGCGCCGCTGTCATCACTGCGCCTGGCCCGGGGCGGCCCTGAGGTCGTGCGCTT
TGAGGGCGAGGTCGAGAACCGGGCGCTTGTGCGTCCCGCACTCGCTGGCCTGGACGGCAAGACT
ATGATGCTCAGCGGCCTCCCCCATGGCCTGCGTGTAAGCGCCGCTGAGGCCACGCCCCCACCCA
CGGATGACCCCGCCCACCCTCATGACACCATCCACCTTCAGGGCCTGCCCTGCCGCTGGTTTGC
GCCCCGTGGGGGCAGTGGCGGGGATGAGGCTGGAGGCATTTCTTCCCCTGGTGGCATTGCCTCA
GCAGAGAGGCCCAGCGAGGCTCTCCTGCGCCAGGCTTTCGGGGCGTTTGGTGAGATCCGCCATG
TGGACATTCCCATGCTGGACCCTTACCTTGGTGAGGACGGCAGCCATGGCGGGGGCGGGGGCGG
GCGGCTCCGCTTCGAGGCCTACGTTCAGTACCGAGAGCGTGATGCCTACGCCCGTGCCATGGCT
GCCCTGCGTGGTGCTAAGCTCATGTTTAGGGGCACGGACGGCAAAGCTGTGGCCTGCGGCATCA
AGGTGACATCAGATGCCACACAGCACCTGAGCGAGGCTTCGATCAGACGCCGGCAGCTGGAGCG
GCAGAAACTACAGGAACTTGAGCAGCGGCGTGAAGAGCAGAAGCGGAAGGAGCGTGAGGATGAG
GCGCGGCGGCGGGCAGGCCAGCGGAAGCAGCGGGAGGCAGAGCAGCAACAACGGGCACGGCGTC
GGGAGGAGAAGCTTCGGCGCAGAGAGGCACGGCAACGAGCACGGAAGAGACGAGGCCGACGTCG
AGAGGAGGAGGAGGAGGAGGAGGAGGCAGAGCCCCAGCCTGTGTTGGGGCGTGAGGAAGAGGAA
GGTGCAGAGCCCCGTCGGCTACTGCTCGCCCAGCGCAACCTGCAGTCTGTGCGGCTCATTGCTG
CCCTGCTTGCCCGCGCTGAAGCCGCCAGACGCCGCCAGCGTGAGCAGAGCGAGGAGCGACGTCG
CCATGCAAAGGAGGCAGAGCTTCGGCGCCAGCAGGAGGCAGAGCTTCGGCGTCAGAGGGAGGCA
GAGCTACGCCGAGTGGAAGAGGAGAAGCGGCGGGCACTGGGACTGCAACGTCGGGAGCGTGAGC
TCCGACATCGCCTCCTTGCCCTGCTGCTTGCCCGGGGGCCTGGCTTGGGGTGTCTAGTGGGCGG
AGCCGGGACAGGAAGTGACGTTTTGGGGGCTGGGAACAGCAAGATGGCTGTGGGGAGTGGCCAT
GGGGAGGCAGGACAAAGCCAGACAATGACAGGAAGTGAAATCAGGGGAGATGGAAGGGAGAATA
TGAAGACAGGAAGTGATGTGGCTACCTCAGGAAATGGCCACATTGACAGAGAAAATGAGAAAAT
AAAGACAGGAAGTGGGATCCCAGCCACAGGAGGTGGTACTGGGGACCCAAGAGGTGCGGACAAA
CAAACAGGAAGTAGTGTCCAGCCGACAGGAAGTGATGCAAAGACAGGAAATGGTGCCAGAGGGA
CAGGAGGTGGCCCGGGAAGGGACCCAATTGCAAAGACGTGGTCGGAAAATATGACGACAGGAAG
TGGCAGCCCCGAAACAGGAAGTGGTGTGGCCAAGATGGCGACAGTAAGTGCTAGCAATGAGACC
GAAAGTTCATCTGCCAAGCTCAAAGCCATGCCCAGTTCCTGTAGTGACCGGGAGAGATGTGGCC
TTGAGGGCCGCCCGTCCTGGCATTCCCGTGACTTTGGGGGCAGTTCAGGACAGTCTAGAAGCCG
TGAAGGCAGTGAGCGCCGACGCCCCCACGAGGAAGAGGACGGCGGTGGGCGGGACCGGAAGCGC
GGACACCGCCATCGTGAGGACCGTGGTCGCTCGAGGTCTCGATCCCCGCGGCGCCGGTGACCGA
CCTGCCCAAATCATGGGACTTACTAGATGACCCAGAAGTTCCGCCCCGAGGACTGTGAAAGTCA
TAGGCTCCCTGGCGGCCATTATGGATTTTTTTCAAACCTCTGAATGCGGAGTTGAGTTTTCGGT
TTCGGGGGCGGGACTTGGGTGTGACATGAGTGGCGTATTGTGTGGCCATGCTGAATAAACGCCT
GGAGTTGGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001120718	(Get FASTA)	NCBI Sequence Viewer
	XP_006249060	(Get FASTA)	NCBI Sequence Viewer
	XP_006249061	(Get FASTA)	NCBI Sequence Viewer
	XP_006249062	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI00663	(Get FASTA)	NCBI Sequence Viewer
	AAI66722	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001120718 ⟸ NM_001127246

- Sequence:

show sequence

MSSATIVHDPSEAVPLCPALGLYLKPIARVTISVSLPPPPPAPPPSPSSTSPPPRAPSRAVSNW
EVMEGLRAMAQGARAPLSSLRLARGGPEVVRFEGEVENRALVRPALAGLDGKTMMLSGLPHGLR
VSAAEATPPPTDDPAHPHDTIHLQGLPCRWFAPRGGSGGDEAGGISSPGGIASAERPSEALLRQ
AFGAFGEIRHVDIPMLDPYLGEDGSHGGGGGGRLRFEAYVQYRERDAYARAMAALRGAKLMFRG
TDGKAVACGIKVTSDATQHLSEASIRRRQLERQKLQELEQRREEQKRKEREDEARRRAGQRKQR
EAEQQQRARRREEKLRRREARQRARKRRGRRREEEEEEEAEPQPVLGREEEEGAEPRRLLLAQR
NLQSVRLIAALLARAEAARRRQREQSEERRRHAKEAELRRQQEAELRRQREAELRRVEEEKRRA
LGLQRRERELRHRLLALLLARGPGLGRLVGGAGTGSDVLGAGNSKMAVGSGHGEAGQSQTMTGS
EIRGDGRENMKTGSDVATSGNGHIDRENEKIKTGSGIPATGGGTGDPRGADKQTGSSVQPTGSD
AKTGNGARGTGGGPGRDPIAKTWSENMTTGSGSPETGSGVAKMATVSASNETESSSAKLKAMPS
SCSDRERCGLEGRPSWHSRDFGGSSGQSRSREGSERRRPHEEEDGGGRDRKRGHRHREDRGRSR
SRSPRRR

hide sequence

RefSeq Acc Id:	XP_006249061 ⟸ XM_006248999
- Peptide Label:	isoform X1
- UniProtKB:	F1MAF2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSATIVHDPSEAVPLCPALGLYLKPIARVTISVSLPPPPPAPPPSPSSTSPPPRAPSRAVSNW EVMEGLRAMAQGARAPLSSLRLARGGPEVVRFEGEVENRALVRPALAGLDGKTMMLSGLPHGLR VSAAEATPPPTDDPAHPHDTIHLQGLPCRWFAPRGGSGGDEAGGISSPGGIASAERPSEALLRQ AFGAFGEIRHVDIPMLDPYLGEDGSHGGGGGGRLRFEAYVQYRERDAYARAMAALRGAKLMFRG TDGKAVACGIKVTSDATQHLSEASIRRRQLERQKLQELEQRREEQKRKEREDEARRRAGQRKQR EAEQQQRARRREEKLRRREARQRARKRRGRRREEEEEEEEAEPQPVLGREEEEGAEPRRLLLAQ RNLQSVRLIAALLARAEAARRRQREQSEERRRHAKEAELRRQQEAELRRQREAELRRVEEEKRR ALGLQRRERELRHRLLALLLARGPGLGCLVGGAGTGSDVLGAGNSKMAVGSGHGEAGQSQTMTG SEIRGDGRENMKTGSDVATSGNGHIDRENEKIKTGSGIPATGGGTGDPRGADKQTGSSVQPTGS DAKTGNGARGTGGGPGRDPIAKTWSENMTTGSGSPETGSGVAKMATVSASNETESSSAKLKAMP SSCSDRERCGLEGRPSWHSRDFGGSSGQSRSREGSERRRPHEEEDGGGRDRKRGHRHREDRGRS RSRSPRRR hide sequence

RefSeq Acc Id:	XP_006249060 ⟸ XM_006248998
- Peptide Label:	isoform X1
- UniProtKB:	F1MAF2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSATIVHDPSEAVPLCPALGLYLKPIARVTISVSLPPPPPAPPPSPSSTSPPPRAPSRAVSNW EVMEGLRAMAQGARAPLSSLRLARGGPEVVRFEGEVENRALVRPALAGLDGKTMMLSGLPHGLR VSAAEATPPPTDDPAHPHDTIHLQGLPCRWFAPRGGSGGDEAGGISSPGGIASAERPSEALLRQ AFGAFGEIRHVDIPMLDPYLGEDGSHGGGGGGRLRFEAYVQYRERDAYARAMAALRGAKLMFRG TDGKAVACGIKVTSDATQHLSEASIRRRQLERQKLQELEQRREEQKRKEREDEARRRAGQRKQR EAEQQQRARRREEKLRRREARQRARKRRGRRREEEEEEEEAEPQPVLGREEEEGAEPRRLLLAQ RNLQSVRLIAALLARAEAARRRQREQSEERRRHAKEAELRRQQEAELRRQREAELRRVEEEKRR ALGLQRRERELRHRLLALLLARGPGLGCLVGGAGTGSDVLGAGNSKMAVGSGHGEAGQSQTMTG SEIRGDGRENMKTGSDVATSGNGHIDRENEKIKTGSGIPATGGGTGDPRGADKQTGSSVQPTGS DAKTGNGARGTGGGPGRDPIAKTWSENMTTGSGSPETGSGVAKMATVSASNETESSSAKLKAMP SSCSDRERCGLEGRPSWHSRDFGGSSGQSRSREGSERRRPHEEEDGGGRDRKRGHRHREDRGRS RSRSPRRR hide sequence

RefSeq Acc Id:	XP_006249062 ⟸ XM_006249000
- Peptide Label:	isoform X1
- UniProtKB:	F1MAF2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSATIVHDPSEAVPLCPALGLYLKPIARVTISVSLPPPPPAPPPSPSSTSPPPRAPSRAVSNW EVMEGLRAMAQGARAPLSSLRLARGGPEVVRFEGEVENRALVRPALAGLDGKTMMLSGLPHGLR VSAAEATPPPTDDPAHPHDTIHLQGLPCRWFAPRGGSGGDEAGGISSPGGIASAERPSEALLRQ AFGAFGEIRHVDIPMLDPYLGEDGSHGGGGGGRLRFEAYVQYRERDAYARAMAALRGAKLMFRG TDGKAVACGIKVTSDATQHLSEASIRRRQLERQKLQELEQRREEQKRKEREDEARRRAGQRKQR EAEQQQRARRREEKLRRREARQRARKRRGRRREEEEEEEEAEPQPVLGREEEEGAEPRRLLLAQ RNLQSVRLIAALLARAEAARRRQREQSEERRRHAKEAELRRQQEAELRRQREAELRRVEEEKRR ALGLQRRERELRHRLLALLLARGPGLGCLVGGAGTGSDVLGAGNSKMAVGSGHGEAGQSQTMTG SEIRGDGRENMKTGSDVATSGNGHIDRENEKIKTGSGIPATGGGTGDPRGADKQTGSSVQPTGS DAKTGNGARGTGGGPGRDPIAKTWSENMTTGSGSPETGSGVAKMATVSASNETESSSAKLKAMP SSCSDRERCGLEGRPSWHSRDFGGSSGQSRSREGSERRRPHEEEDGGGRDRKRGHRHREDRGRS RSRSPRRR hide sequence

RefSeq Acc Id:

ENSRNOP00000032594 ⟸ ENSRNOT00000037829

RefSeq Acc Id:

ENSRNOP00000070153 ⟸ ENSRNOT00000078999

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698484

Promoter ID:

EPDNEW_R9009

Type:

initiation region

Name:

Akap17a_1

Description:

A-kinase anchoring protein 17A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	18,531,175 - 18,531,235	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564640	AgrOrtholog
Ensembl Genes	ENSRNOG00000028211	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000032594	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000070153	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000037829	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000078999	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7933458	IMAGE-MGC_LOAD
	IMAGE:7937167	IMAGE-MGC_LOAD
InterPro	AKAP17A	UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
KEGG Report	rno:288526	UniProtKB/TrEMBL
MGC_CLONE	MGC:124729	IMAGE-MGC_LOAD
	MGC:188437	IMAGE-MGC_LOAD
NCBI Gene	288526	ENTREZGENE
PANTHER	PTHR12484:SF2	UniProtKB/TrEMBL
PhenoGen	Akap17a	PhenoGen
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	B2RYB9_RAT	UniProtKB/TrEMBL
	F1MAF2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-25	Akap17a	A-kinase anchoring protein 17A	Akap17a	A kinase (PRKA) anchor protein 17A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-09-10	Akap17a	A kinase (PRKA) anchor protein 17A	LOC288526	similar to DNA segment on chromosome X and Y (unique) 155 expressed sequence isoform 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC288526	similar to DNA segment on chromosome X and Y (unique) 155 expressed sequence isoform 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar