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Pathways
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Gene: Sf3b6 (splicing factor 3B, subunit 6) Rattus norvegicus
Analyze
Symbol: Sf3b6
Name: splicing factor 3B, subunit 6
Description: Predicted to have mRNA binding activity. Predicted to be involved in blastocyst formation and mRNA splicing, via spliceosome. Predicted to localize to the U12-type spliceosomal complex; U2 snRNP; and catalytic step 2 spliceosome. Orthologous to human SF3B6 (splicing factor 3b subunit 6); PARTICIPATES IN spliceosome pathway; INTERACTS WITH tolcapone; (S)-nicotine (ortholog); 2-hydroxypropanoic acid (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC100365504; splicing factor 3B subunit 6; splicing factor 3B, 14 kDa subunit-like; uncharacterized protein LOC100365504
Orthologs:
Homo sapiens (human) : SF3B6 (splicing factor 3b subunit 6)  HGNC  Alliance
Mus musculus (house mouse) : Sf3b6 (splicing factor 3B, subunit 6)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sf3b6 (splicing factor 3b subunit 6)
Pan paniscus (bonobo/pygmy chimpanzee) : SF3B6 (splicing factor 3b subunit 6)
Canis lupus familiaris (dog) : SF3B6 (splicing factor 3b subunit 6)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sf3b6 (splicing factor 3b subunit 6)
Sus scrofa (pig) : SF3B6 (splicing factor 3b subunit 6)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0629,991,232 - 29,999,668 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0639,886,845 - 39,895,262 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera627,295,792 - 27,304,777 (+)NCBICelera
Cytogenetic Map6q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model

Annotation    (Toggle Annotation Detail/Summary View)

Gene-Chemical Interaction Annotations
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Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
  
More on Sf3b6
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 2318878
Created: 2010-05-05
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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