Zbtb18 (zinc finger and BTB domain containing 18) - Rat Genome Database

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Gene: Zbtb18 (zinc finger and BTB domain containing 18) Rattus norvegicus
Analyze
Symbol: Zbtb18
Name: zinc finger and BTB domain containing 18
RGD ID: 621548
Description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; positive regulation of transcription by RNA polymerase II; and skeletal muscle tissue development. Predicted to act upstream of or within several processes, including in utero embryonic development; nervous system development; and regulation of cell division. Predicted to be located in nuclear speck. Predicted to be part of heterochromatin. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 22. Orthologous to human ZBTB18 (zinc finger and BTB domain containing 18); INTERACTS WITH ammonium chloride; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 58 kDa repressor protein; Rp58; rRP58; transcriptional repressor RP58; Zfp238; zinc finger and BTB domain-containing protein 18; zinc finger protein 238; Znf238
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81391,971,602 - 91,980,058 (+)NCBIGRCr8
mRatBN7.21389,439,501 - 89,447,958 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1389,439,420 - 89,448,862 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1391,944,737 - 91,953,193 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01393,344,946 - 93,353,402 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01390,525,391 - 90,533,843 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01395,582,234 - 95,593,316 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1395,589,668 - 95,591,236 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013100,031,993 - 100,039,682 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41393,345,905 - 93,347,473 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11393,534,788 - 93,536,357 (+)NCBI
Celera1389,005,808 - 89,007,376 (+)NCBICelera
Cytogenetic Map13q25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
heterochromatin  (IEA,ISO)
nuclear speck  (IEA,ISO)
nucleoplasm  (ISO)
nucleus  (IBA,IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Structural analysis of the gene encoding RP58, a sequence-specific transrepressor associated with heterochromatin. Meng G, etal., Gene 2000 Jan 25;242(1-2):59-64.
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9756912   PMID:12040400   PMID:18262495   PMID:19409883   PMID:20059953   PMID:25796446   PMID:37183291  


Genomics

Comparative Map Data
Zbtb18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81391,971,602 - 91,980,058 (+)NCBIGRCr8
mRatBN7.21389,439,501 - 89,447,958 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1389,439,420 - 89,448,862 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1391,944,737 - 91,953,193 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01393,344,946 - 93,353,402 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01390,525,391 - 90,533,843 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01395,582,234 - 95,593,316 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1395,589,668 - 95,591,236 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013100,031,993 - 100,039,682 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41393,345,905 - 93,347,473 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11393,534,788 - 93,536,357 (+)NCBI
Celera1389,005,808 - 89,007,376 (+)NCBICelera
Cytogenetic Map13q25NCBI
ZBTB18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381244,048,491 - 244,057,476 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1244,048,547 - 244,057,476 (+)EnsemblGRCh38hg38GRCh38
GRCh371244,211,955 - 244,220,778 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361242,281,184 - 242,287,401 (+)NCBINCBI36Build 36hg18NCBI36
Build 341240,540,625 - 240,546,817NCBI
Celera1217,504,910 - 217,511,127 (+)NCBICelera
Cytogenetic Map1q44NCBI
HuRef1214,598,471 - 214,604,688 (+)NCBIHuRef
CHM1_11245,484,555 - 245,493,088 (+)NCBICHM1_1
T2T-CHM13v2.01243,465,054 - 243,473,966 (+)NCBIT2T-CHM13v2.0
Zbtb18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391177,269,892 - 177,278,330 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1177,269,917 - 177,278,330 (+)EnsemblGRCm39 Ensembl
GRCm381177,442,351 - 177,450,764 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1177,442,351 - 177,450,764 (+)EnsemblGRCm38mm10GRCm38
MGSCv371179,374,792 - 179,380,895 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361179,281,336 - 179,287,439 (+)NCBIMGSCv36mm8
Celera1184,508,151 - 184,514,258 (+)NCBICelera
Cytogenetic Map1H4NCBI
cM Map182.72NCBI
Zbtb18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554067,364,080 - 7,373,483 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554067,364,080 - 7,372,038 (+)NCBIChiLan1.0ChiLan1.0
ZBTB18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215,082,670 - 5,091,312 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan115,304,714 - 5,313,352 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01219,660,496 - 219,669,134 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11225,042,282 - 225,050,259 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1225,042,281 - 225,050,259 (+)Ensemblpanpan1.1panPan2
ZBTB18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1735,123,417 - 35,130,349 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl735,117,209 - 35,129,134 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha734,597,536 - 34,605,025 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0734,950,266 - 34,957,787 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl734,857,686 - 34,958,027 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1734,787,410 - 34,794,904 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0734,803,630 - 34,811,140 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0735,068,175 - 35,075,704 (+)NCBIUU_Cfam_GSD_1.0
Zbtb18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934448,033,306 - 48,041,262 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365266,705,983 - 6,712,281 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365266,706,035 - 6,714,011 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1016,913,025 - 16,920,586 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11016,913,022 - 16,921,722 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21019,351,349 - 19,359,708 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZBTB18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12581,077,011 - 81,085,049 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605583,261,294 - 83,270,100 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477115,425,604 - 15,430,542 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477115,425,610 - 15,432,012 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zbtb18
21 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:108
Count of miRNA genes:86
Interacting mature miRNAs:98
Transcripts:ENSRNOT00000005849
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134551471990514719Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat

Markers in Region
Zfp238  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21389,443,319 - 89,444,237 (+)MAPPERmRatBN7.2
Rnor_6.01395,588,676 - 95,589,592NCBIRnor6.0
Rnor_5.013100,035,042 - 100,035,958UniSTSRnor5.0
RGSC_v3.41393,344,913 - 93,345,829UniSTSRGSC3.4
Celera1389,004,816 - 89,005,732UniSTS
Cytogenetic Map13q25UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 42 47 31 19 31 8 11 74 35 41 11 8
Low 1 10 10 10
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001401285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_022678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF221838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000005849   ⟹   ENSRNOP00000005849
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1389,439,691 - 89,445,877 (+)Ensembl
Rnor_6.0 Ensembl1395,589,668 - 95,591,236 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094045   ⟹   ENSRNOP00000078776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1389,440,186 - 89,445,877 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098128   ⟹   ENSRNOP00000077961
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1389,439,420 - 89,446,151 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105416   ⟹   ENSRNOP00000082972
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1389,439,420 - 89,448,862 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115308   ⟹   ENSRNOP00000086781
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1389,440,159 - 89,447,957 (+)Ensembl
RefSeq Acc Id: NM_001401285   ⟹   NP_001388214
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,973,933 - 91,980,058 (+)NCBI
mRatBN7.21389,441,832 - 89,447,958 (+)NCBI
RefSeq Acc Id: NM_022678   ⟹   NP_073169
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,971,602 - 91,980,058 (+)NCBI
mRatBN7.21389,439,501 - 89,447,958 (+)NCBI
Rnor_6.01395,589,668 - 95,591,236 (+)NCBI
Rnor_5.013100,031,993 - 100,039,682 (+)NCBI
RGSC_v3.41393,345,905 - 93,347,473 (+)RGD
Celera1389,005,808 - 89,007,376 (+)RGD
Sequence:
RefSeq Acc Id: XM_006250328   ⟹   XP_006250390
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,972,623 - 91,980,058 (+)NCBI
mRatBN7.21389,440,517 - 89,447,958 (+)NCBI
Rnor_6.01395,585,624 - 95,593,316 (+)NCBI
Rnor_5.013100,031,993 - 100,039,682 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250331   ⟹   XP_006250393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,975,384 - 91,980,058 (+)NCBI
mRatBN7.21389,443,287 - 89,447,958 (+)NCBI
Rnor_6.01395,588,627 - 95,593,316 (+)NCBI
Rnor_5.013100,031,993 - 100,039,682 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039091072   ⟹   XP_038947000
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,971,734 - 91,980,058 (+)NCBI
mRatBN7.21389,439,633 - 89,447,958 (+)NCBI
RefSeq Acc Id: XM_039091073   ⟹   XP_038947001
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,972,489 - 91,980,058 (+)NCBI
mRatBN7.21389,440,370 - 89,447,958 (+)NCBI
RefSeq Acc Id: XM_039091074   ⟹   XP_038947002
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,971,918 - 91,980,058 (+)NCBI
mRatBN7.21389,439,817 - 89,447,958 (+)NCBI
RefSeq Acc Id: XM_039091078   ⟹   XP_038947006
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,971,922 - 91,980,058 (+)NCBI
mRatBN7.21389,439,821 - 89,447,958 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_073169   ⟸   NM_022678
- Peptide Label: isoform 1
- UniProtKB: A0A8I6A6Y8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250390   ⟸   XM_006250328
- Peptide Label: isoform X1
- UniProtKB: A6JGD3 (UniProtKB/TrEMBL),   G3V6J7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250393   ⟸   XM_006250331
- Peptide Label: isoform X2
- UniProtKB: G3V6J7 (UniProtKB/TrEMBL),   A0A8I6A6Y8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000005849   ⟸   ENSRNOT00000005849
RefSeq Acc Id: XP_038947000   ⟸   XM_039091072
- Peptide Label: isoform X1
- UniProtKB: A6JGD3 (UniProtKB/TrEMBL),   G3V6J7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947002   ⟸   XM_039091074
- Peptide Label: isoform X1
- UniProtKB: A6JGD3 (UniProtKB/TrEMBL),   G3V6J7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947006   ⟸   XM_039091078
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A6Y8 (UniProtKB/TrEMBL),   G3V6J7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947001   ⟸   XM_039091073
- Peptide Label: isoform X1
- UniProtKB: A6JGD3 (UniProtKB/TrEMBL),   G3V6J7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000077961   ⟸   ENSRNOT00000098128
RefSeq Acc Id: ENSRNOP00000078776   ⟸   ENSRNOT00000094045
RefSeq Acc Id: ENSRNOP00000086781   ⟸   ENSRNOT00000115308
RefSeq Acc Id: ENSRNOP00000082972   ⟸   ENSRNOT00000105416
RefSeq Acc Id: NP_001388214   ⟸   NM_001401285
- Peptide Label: isoform 2
- UniProtKB: A6JGD3 (UniProtKB/TrEMBL)
Protein Domains
BTB   C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JKY3-F1-model_v2 AlphaFold Q9JKY3 1-522 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621548 AgrOrtholog
BioCyc Gene G2FUF-17197 BioCyc
Ensembl Genes ENSRNOG00000004423 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005849.7 UniProtKB/TrEMBL
  ENSRNOT00000094045.1 UniProtKB/TrEMBL
  ENSRNOT00000098128.1 UniProtKB/TrEMBL
  ENSRNOT00000105416 ENTREZGENE
  ENSRNOT00000105416.1 UniProtKB/TrEMBL
  ENSRNOT00000115308.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:64619 UniProtKB/Swiss-Prot
NCBI Gene 64619 ENTREZGENE
PANTHER ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 18 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zbtb18 PhenoGen
PROSITE BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004423 RatGTEx
SMART BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5Y6J3_RAT UniProtKB/TrEMBL
  A0A8I6A6Y8 ENTREZGENE, UniProtKB/TrEMBL
  A6JGD3 ENTREZGENE, UniProtKB/TrEMBL
  G3V6J7 ENTREZGENE, UniProtKB/TrEMBL
  Q9JKY3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-28 Zbtb18  zinc finger and BTB domain containing 18  Zfp238  zinc finger protein 238  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Zfp238  zinc finger protein 238  Rp58  RP58 protein  Symbol and Name updated 1299863 APPROVED
2002-08-07 Rp58  RP58 protein      Symbol and Name status set to provisional 70820 PROVISIONAL