Pcnt (pericentrin) - Rat Genome Database

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Gene: Pcnt (pericentrin) Rattus norvegicus
Analyze
Symbol: Pcnt
Name: pericentrin
RGD ID: 1595865
Description: Predicted to enable molecular adaptor activity. Predicted to be involved in microtubule cytoskeleton organization and positive regulation of intracellular protein transport. Predicted to act upstream of or within several processes, including embryonic organ development; mitotic spindle organization; and nervous system development. Predicted to be located in several cellular components, including cis-Golgi network; intercellular bridge; and microtubule organizing center. Human ortholog(s) of this gene implicated in microcephalic osteodysplastic primordial dwarfism type II. Orthologous to human PCNT (pericentrin); PARTICIPATES IN protein kinase C (PKC) signaling pathway; INTERACTS WITH aconitine; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC309692; similar to pericentrin
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82012,189,767 - 12,278,179 (+)NCBIGRCr8
mRatBN7.22012,190,597 - 12,278,723 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2012,191,648 - 12,278,710 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02012,943,523 - 13,038,615 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2012,944,786 - 13,038,431 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02015,102,765 - 15,195,221 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42012,608,650 - 12,694,390 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2013,689,491 - 13,776,410 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mutations in pericentrin cause Seckel syndrome with defective ATR-dependent DNA damage signaling. Griffith E, etal., Nat Genet. 2008 Feb;40(2):232-6. Epub 2007 Dec 23.
2. The smallest teeth in the world are caused by mutations in the PCNT gene. Kantaputra P, etal., Am J Med Genet A. 2011 Jun;155A(6):1398-403. doi: 10.1002/ajmg.a.33984. Epub 2011 May 12.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. Mutations in the pericentrin (PCNT) gene cause primordial dwarfism. Rauch A, etal., Science. 2008 Feb 8;319(5864):816-9. doi: 10.1126/science.1151174. Epub 2008 Jan 3.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. Gene expression profiling and qRT-PCR expression of RRP1B, PCNT, KIF21A and ADRB2 in leucocytes of Down's syndrome subjects. Salemi M, etal., J Genet. 2012 Mar 13;91(1):e18-23.
9. Pericentrin expression in Down's syndrome. Salemi M, etal., Neurol Sci. 2013 Nov;34(11):2023-5. doi: 10.1007/s10072-013-1529-z. Epub 2013 Aug 27.
10. Molecular analysis of pericentrin gene (PCNT) in a series of 24 Seckel/microcephalic osteodysplastic primordial dwarfism type II (MOPD II) families. Willems M, etal., J Med Genet. 2010 Dec;47(12):797-802. doi: 10.1136/jmg.2009.067298. Epub 2009 Jul 29.
Additional References at PubMed
PMID:8124707   PMID:11555636   PMID:15037549   PMID:15280373   PMID:15337773   PMID:17600711   PMID:17920017   PMID:18955030   PMID:19543530   PMID:19946888   PMID:20096683   PMID:20186884  
PMID:21399614   PMID:22031837   PMID:22797915   PMID:22851319   PMID:24145165   PMID:24421332   PMID:25088364   PMID:25220058   PMID:27137183  


Genomics

Comparative Map Data
Pcnt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82012,189,767 - 12,278,179 (+)NCBIGRCr8
mRatBN7.22012,190,597 - 12,278,723 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2012,191,648 - 12,278,710 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02012,943,523 - 13,038,615 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2012,944,786 - 13,038,431 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02015,102,765 - 15,195,221 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42012,608,650 - 12,694,390 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2013,689,491 - 13,776,410 (+)NCBICelera
Cytogenetic Map20p12NCBI
PCNT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382146,324,156 - 46,445,769 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2146,324,124 - 46,445,769 (+)EnsemblGRCh38hg38GRCh38
GRCh372147,744,070 - 47,865,682 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362146,568,483 - 46,690,110 (+)NCBINCBI36Build 36hg18NCBI36
Build 342146,568,482 - 46,690,106NCBI
Celera2132,857,810 - 32,978,856 (+)NCBICelera
Cytogenetic Map21q22.3NCBI
HuRef2133,126,870 - 33,245,591 (+)NCBIHuRef
CHM1_12147,304,775 - 47,426,531 (+)NCBICHM1_1
T2T-CHM13v2.02144,709,501 - 44,831,895 (+)NCBIT2T-CHM13v2.0
Pcnt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391076,187,098 - 76,279,988 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1076,187,097 - 76,278,620 (-)EnsemblGRCm39 Ensembl
GRCm381076,351,254 - 76,442,912 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1076,351,263 - 76,442,786 (-)EnsemblGRCm38mm10GRCm38
MGSCv371075,813,999 - 75,905,657 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361075,794,980 - 75,886,622 (-)NCBIMGSCv36mm8
Celera1077,395,555 - 77,487,301 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1038.8NCBI
Pcnt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540742,735,188 - 42,835,465 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540742,735,078 - 42,835,851 (+)NCBIChiLan1.0ChiLan1.0
PCNT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22242,420,957 - 42,624,254 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12137,295,516 - 37,433,582 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02132,665,361 - 32,741,592 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12145,914,665 - 46,042,990 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2145,914,665 - 46,042,990 (+)Ensemblpanpan1.1panPan2
DIP2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13139,695,620 - 39,778,527 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3139,686,465 - 39,777,484 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3138,915,968 - 39,008,744 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03139,329,446 - 39,422,224 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3139,329,161 - 39,422,110 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13139,191,013 - 39,283,507 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03139,151,916 - 39,244,318 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03139,669,833 - 39,762,599 (+)NCBIUU_Cfam_GSD_1.0
Pcnt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497138,882,745 - 38,980,366 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936778149,177 - 247,357 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936778149,844 - 248,905 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCNT
(Sus scrofa - pig)		 No map positions available.
PCNT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1289,934,888 - 90,046,767 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl289,936,210 - 90,046,328 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605418,328,339 - 18,445,620 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcnt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474531,403,014 - 31,515,751 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474531,402,791 - 31,516,522 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pcnt
740 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:144
Count of miRNA genes:89
Interacting mature miRNAs:95
Transcripts:ENSRNOT00000048218, ENSRNOT00000074737
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20460660717617956Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20669170617489458Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
1581577Pur15Proteinuria QTL 154.380.0002urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)20804241017617956Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20460660717617956Rat
631265Iresp1Immunoglobin response QTL18.3blood anti-double stranded DNA antibody amount (VT:0004762)serum anti-DNA antibody level (CMO:0001533)20903971913461775Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat

Markers in Region
D20Uwm4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22012,267,086 - 12,267,284 (+)MAPPERmRatBN7.2
Rnor_6.02013,026,489 - 13,026,686NCBIRnor6.0
Rnor_5.02015,183,601 - 15,183,798UniSTSRnor5.0
RGSC_v3.42012,682,772 - 12,682,969UniSTSRGSC3.4
Celera2013,764,327 - 13,764,524UniSTS
Cytogenetic Map20p12UniSTS
RH137318  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22012,278,439 - 12,278,621 (+)MAPPERmRatBN7.2
Rnor_6.02013,037,842 - 13,038,023NCBIRnor6.0
Rnor_5.02015,194,954 - 15,195,135UniSTSRnor5.0
RGSC_v3.42012,694,123 - 12,694,304UniSTSRGSC3.4
Celera2013,775,637 - 13,775,818UniSTS
RH 3.4 Map20179.22UniSTS
Cytogenetic Map20p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 19 13 4 17 4 7 10 37 28 41 11 7
Low 2 24 44 37 2 37 1 1 37 7 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_002728936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC098763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000048218   ⟹   ENSRNOP00000039329
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2012,191,648 - 12,278,710 (+)Ensembl
Rnor_6.0 Ensembl2012,944,786 - 13,038,431 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097925   ⟹   ENSRNOP00000095505
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2012,194,328 - 12,278,710 (+)Ensembl
RefSeq Acc Id: NM_001427002   ⟹   NP_001413931
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,192,353 - 12,278,178 (+)NCBI
RefSeq Acc Id: XM_002728936   ⟹   XP_002728982
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,189,767 - 12,278,179 (+)NCBI
mRatBN7.22012,190,597 - 12,278,723 (+)NCBI
Rnor_6.02012,943,524 - 13,038,615 (+)NCBI
Rnor_5.02015,102,765 - 15,195,221 (+)NCBI
RGSC_v3.42012,608,650 - 12,694,390 (+)RGD
Sequence:
RefSeq Acc Id: XM_006256312   ⟹   XP_006256374
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,189,767 - 12,278,179 (+)NCBI
mRatBN7.22012,190,597 - 12,278,723 (+)NCBI
Rnor_6.02012,943,524 - 13,038,615 (+)NCBI
Rnor_5.02015,102,765 - 15,195,221 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601880   ⟹   XP_017457369
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,189,767 - 12,278,179 (+)NCBI
mRatBN7.22012,190,597 - 12,278,723 (+)NCBI
Rnor_6.02012,943,523 - 13,038,615 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039099203   ⟹   XP_038955131
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,189,767 - 12,278,179 (+)NCBI
mRatBN7.22012,190,597 - 12,278,723 (+)NCBI
RefSeq Acc Id: XM_039099204   ⟹   XP_038955132
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,189,767 - 12,278,179 (+)NCBI
mRatBN7.22012,190,597 - 12,278,723 (+)NCBI
RefSeq Acc Id: XM_039099205   ⟹   XP_038955133
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,189,767 - 12,278,179 (+)NCBI
mRatBN7.22012,190,597 - 12,278,723 (+)NCBI
RefSeq Acc Id: XM_039099206   ⟹   XP_038955134
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,189,767 - 12,278,179 (+)NCBI
mRatBN7.22012,190,597 - 12,278,723 (+)NCBI
RefSeq Acc Id: XM_039099207   ⟹   XP_038955135
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,189,767 - 12,278,179 (+)NCBI
mRatBN7.22012,190,597 - 12,278,723 (+)NCBI
RefSeq Acc Id: XM_039099208   ⟹   XP_038955136
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,189,767 - 12,278,179 (+)NCBI
mRatBN7.22012,190,597 - 12,278,723 (+)NCBI
RefSeq Acc Id: XM_039099209   ⟹   XP_038955137
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,189,767 - 12,278,179 (+)NCBI
mRatBN7.22012,190,597 - 12,278,723 (+)NCBI
RefSeq Acc Id: XM_039099210   ⟹   XP_038955138
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,189,767 - 12,278,179 (+)NCBI
mRatBN7.22012,190,597 - 12,278,723 (+)NCBI
RefSeq Acc Id: XM_039099211   ⟹   XP_038955139
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,221,436 - 12,278,179 (+)NCBI
mRatBN7.22012,221,960 - 12,278,723 (+)NCBI
RefSeq Acc Id: XM_063279158   ⟹   XP_063135228
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,189,767 - 12,278,179 (+)NCBI
RefSeq Acc Id: XM_063279159   ⟹   XP_063135229
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,189,767 - 12,278,179 (+)NCBI
RefSeq Acc Id: XM_063279160   ⟹   XP_063135230
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,189,767 - 12,278,179 (+)NCBI
RefSeq Acc Id: XM_063279161   ⟹   XP_063135231
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,189,767 - 12,278,179 (+)NCBI
RefSeq Acc Id: XM_063279162   ⟹   XP_063135232
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,189,767 - 12,278,179 (+)NCBI
RefSeq Acc Id: XM_063279163   ⟹   XP_063135233
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82012,209,280 - 12,278,179 (+)NCBI
RefSeq Acc Id: XP_002728982   ⟸   XM_002728936
- Peptide Label: isoform X17
- UniProtKB: D3ZMY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256374   ⟸   XM_006256312
- Peptide Label: isoform X18
- UniProtKB: D3ZMY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457369   ⟸   XM_017601880
- Peptide Label: isoform X6
- UniProtKB: D3ZMY8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000039329   ⟸   ENSRNOT00000048218
RefSeq Acc Id: XP_038955131   ⟸   XM_039099203
- Peptide Label: isoform X1
- UniProtKB: D3ZMY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955136   ⟸   XM_039099208
- Peptide Label: isoform X8
- UniProtKB: D3ZMY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955137   ⟸   XM_039099209
- Peptide Label: isoform X10
- UniProtKB: D3ZMY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955138   ⟸   XM_039099210
- Peptide Label: isoform X11
- UniProtKB: D3ZMY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955133   ⟸   XM_039099205
- Peptide Label: isoform X3
- UniProtKB: D3ZMY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955134   ⟸   XM_039099206
- Peptide Label: isoform X4
- UniProtKB: D3ZMY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955132   ⟸   XM_039099204
- Peptide Label: isoform X2
- UniProtKB: D3ZMY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955135   ⟸   XM_039099207
- Peptide Label: isoform X5
- UniProtKB: D3ZMY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955139   ⟸   XM_039099211
- Peptide Label: isoform X16
Ensembl Acc Id: ENSRNOP00000095505   ⟸   ENSRNOT00000097925
RefSeq Acc Id: XP_063135231   ⟸   XM_063279161
- Peptide Label: isoform X13
- UniProtKB: D3ZMY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135229   ⟸   XM_063279159
- Peptide Label: isoform X9
- UniProtKB: D3ZMY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135232   ⟸   XM_063279162
- Peptide Label: isoform X14
- UniProtKB: D3ZMY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135230   ⟸   XM_063279160
- Peptide Label: isoform X12
- UniProtKB: D3ZMY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135228   ⟸   XM_063279158
- Peptide Label: isoform X7
- UniProtKB: D3ZMY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001413931   ⟸   NM_001427002
- UniProtKB: D3ZMY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135233   ⟸   XM_063279163
- Peptide Label: isoform X15
- UniProtKB: A0A8I6ANK0 (UniProtKB/TrEMBL)
Protein Domains
Pericentrin/AKAP-450 centrosomal targeting

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1595865 AgrOrtholog
BioCyc Gene G2FUF-4187 BioCyc
Ensembl Genes ENSRNOG00000001276 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000048218.7 UniProtKB/TrEMBL
  ENSRNOT00000097925.1 UniProtKB/TrEMBL
InterPro AKAP9/Pericentrin UniProtKB/TrEMBL
  PACT_domain UniProtKB/TrEMBL
NCBI Gene 309692 ENTREZGENE
PANTHER PERICENTRIN UniProtKB/TrEMBL
  PTHR44981 UniProtKB/TrEMBL
Pfam PACT_coil_coil UniProtKB/TrEMBL
PhenoGen Pcnt PhenoGen
RatGTEx ENSRNOG00000001276 RatGTEx
UniProt A0A8I6ANK0 ENTREZGENE, UniProtKB/TrEMBL
  D3ZMY8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-09-17 Pcnt  pericentrin  LOC309692  similar to pericentrin  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC309692  similar to pericentrin      Symbol and Name status set to provisional 70820 PROVISIONAL