Cia1 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Cia1 (Collagen induced arthritis QTL 1) Rattus norvegicus

Symbol: Cia1
Name: Collagen induced arthritis QTL 1
RGD ID: 61432
Also known as: Type II Collagen induced arthritis QTL 1
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: joint inflammation composite score   (CMO:0000919)    
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,621,656 - 14,101,050RGD_MAPPER_PIPELINE
Rnor_6.0204,855,475 - 15,050,565RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0206,935,875 - 17,237,454RGDRnor5.0
RGSC_v3.4203,660,646 - 14,605,852RGDRGSC3.4
RGSC_v3.1203,660,872 - 14,612,758RGD
Cross Type: F2
Strains Crossed: F344/NHsd DA/Bkl 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
DA/Bkl  (IEA)
F344/NHsd  (IEA)

References

Related QTLs

Related QTL Description Reference
Aia1 interacts with RGD:61035
Coreg1 maps to same region RGD:69708
Ciaa1 interacts with RGD:61066


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3695Slc19a1solute carrier family 19 member 1201233467512354517Rat
2209Wdr46WD repeat domain 462054478605455632Rat
619978Csnk2bcasein kinase 2 beta2051086925113675Rat
619986Dnah8dynein, axonemal, heavy chain 82093013179560805Rat
2745Grm4glutamate metabotropic receptor 42067456826791521Rat
2765Gstt1glutathione S-transferase theta 1201379910213816527Rat
3311Pfklphosphofructokinase, liver type201139386011415889Rat
70915Ftcdformimidoyltransferase cyclodeaminase201280695712820466Rat
2413Cryaacrystallin, alpha A201043844410442189Rat
3618Vps52VPS52 subunit of GARP complex2054319975441736Rat
69328Cdkn1acyclin-dependent kinase inhibitor 1A2063484226358864Rat
2840Hspa1bheat shock protein family A (Hsp70) member 1B2048776384880112Rat
3099Mmp11matrix metallopeptidase 11201367005113678834Rat
3950Vars1valyl-tRNA synthetase 12049935395008259Rat
70496Mapk14mitogen activated protein kinase 142059332905995137Rat
3370Ppardperoxisome proliferator-activated receptor delta2078182897883482Rat
2683Ggt1gamma-glutamyltransferase 1201401972314045781Rat
2684Ggt5gamma-glutamyltransferase 5201398844414001296Rat
2934Itpr3inositol 1,4,5-trisphosphate receptor, type 32056458945711702Rat
2702Glo1glyoxalase 12092735899291608Rat
2033Adarb1adenosine deaminase, RNA-specific, B1201197235212101022Rat
3595Rps18ribosomal protein S182054418755445553Rat
3847Tff3trefoil factor 32098508009855481Rat
621024Rps10ribosomal protein S102072157627220331Rat
621227Daxxdeath-domain associated protein2054801035485962Rat
621020Ndufv3NADH:ubiquinone oxidoreductase subunit V3201026582610275298Rat
2703Glp1rglucagon-like peptide 1 receptor2095860759626228Rat
3330Pim1Pim-1 proto-oncogene, serine/threonine kinase2081654238169557Rat
3819TapbpTAP binding protein2054680565476007Rat
621163Mifmacrophage migration inhibitory factor201371521913732980Rat
2435Cstbcystatin B201096635710968399Rat
2363Clpscolipase2058034475806107Rat
620709Tff2trefoil factor 22098726699876008Rat
61923DdtD-dopachrome tautomerase201382715313829624Rat
61924Aif1allograft inflammatory factor 12051613505167176Rat
621090Syngap1synaptic Ras GTPase activating protein 12055354345564657Rat
3045Mapk13mitogen activated protein kinase 132060183746027467Rat
628861Lrrc3leucine rich repeat containing 3201148851411491354Rat
620497Rpl10aribosomal protein L10A2079083097910867Rat
620955Lsslanosterol synthase201284452212870474Rat
69407Sik1salt-inducible kinase 1201067074710680279Rat
621324Pdxkpyridoxal kinase201093065110952194Rat
1303205Phf1PHD finger protein 12055269265531940Rat
628699Hmga1high mobility group AT-hook 12071325017140155Rat
1303269Mpig6bmegakaryocyte and platelet inhibitory receptor G6b2050544195056655Rat
620773Apomapolipoprotein M2051204735123073Rat
3876Tnftumor necrosis factor2051893825192000Rat
1303239Dnmt3lDNA methyltransferase 3 like201134451311359090Rat
1304860Ube2g2ubiquitin-conjugating enzyme E2G 2201170008911721823Rat
620091Upb1beta-ureidopropionase 1201416738314193724Rat
1303043Clic1chloride intracellular channel 12050403145049166Rat
1303050Zbtb9zinc finger and BTB domain containing 92055665175569535Rat
620328B3galt4Beta-1,3-galactosyltransferase 42054461045447679Rat
735065RGD735065similar to GI:13385412-like protein splice form I2068698706910022Rat
3615S100bS100 calcium binding protein B201313063313142856Rat
620707Tff1trefoil factor 12098921249895984Rat
735180Ly6g5clymphocyte antigen 6 family member G5C2051004155104631Rat
1302999Ly6g6clymphocyte antigen 6 family member G6C2050568515060398Rat
1303006Pfdn6prefoldin subunit 62054559745457448Rat
1303008Msh5mutS homolog 52050206905037125Rat
621035Pde9aphosphodiesterase 9A201012362410216325Rat
1306834Mcm3apminichromosome maintenance complex component 3 associated protein201287930412917069Rat
1303306CutacutA divalent cation tolerance homolog2055320245533640Rat
620263Cabin1calcineurin binding protein 1201383603213963003Rat
3247Pacsin1protein kinase C and casein kinase substrate in neurons 12072412487286702Rat
69362Gstt2glutathione S-transferase, theta 2201376081013764481Rat
70936Col18a1collagen type XVIII alpha 1 chain201222520212332858Rat
1303333Ly6g6flymphocyte antigen 6 family member G6F2050710415076627Rat
620294Abcg1ATP binding cassette subfamily G member 12097432699842735Rat
1307801Cmtr1cap methyltransferase 12083249688385174Rat
1305003Pknox1PBX/knotted 1 homeobox 1201033160810358922Rat
2717GnazG protein subunit alpha z201459307214644020Rat
1306008Armc12armadillo repeat containing 122081096918120183Rat
1305581Itgb2integrin subunit beta 2201177777311815647Rat
620077Lst1leukocyte specific transcript 12051752135179352Rat
1305633Rrp1bribosomal RNA processing 1B201084423410869830Rat
1305585Col6a2collagen type VI alpha 2 chain201277347212801179Rat
1306917Uqcc2ubiquinol-cytochrome c reductase complex assembly factor 22057122005723902Rat
1306923Slc5a4solute carrier family 5 member 4201341503913458110Rat
1303101Ly6g5blymphocyte antigen 6 family member G5B2051062485108604Rat
2287Cbscystathionine beta synthase201036198710386663Rat
1302985Rgl2ral guanine nucleotide dissociation stimulator-like 22054585095466853Rat
1307334Pofut2protein O-fucosyltransferase 2201211781112128747Rat
1304880Scube3signal peptide, CUB domain and EGF like domain containing 32077182607749847Rat
2049Adora2aadenosine A2a receptor201426525114282873Rat
1305341Lemd2LEM domain nuclear envelope protein 22057797425786213Rat
1304760Pi16peptidase inhibitor 162069231766932786Rat
1307031Mdga1MAM domain containing glycosylphosphatidylinositol anchor 12085151428574632Rat
1306807Vpreb3V-set pre-B cell surrogate light chain 3201365668313661542Rat
1307430Pcbp3poly(rC) binding protein 3201242925512629985Rat
1303112Ly6g6elymphocyte antigen 6 family member G6E2050631485069032Rat
1305601Rsph14radial spoke head 14 homolog201457698314653236Rat
1305626Taf11TATA-box binding protein associated factor 112074766487484417Rat
1307286Rrp1ribosomal RNA processing 1201098201610993260Rat
1308021Cpne5copine 52064190336500843Rat
1308035Rnf8ring finger protein 82082853808309858Rat
1359370Lhfpl5LHFPL tetraspan subfamily member 52058158375826137Rat
1309155Fkbp5FKBP prolyl isomerase 52079767048097290Rat
1306868Brpf3bromodomain and PHD finger containing, 32060478006086099Rat
1303199E230034O05RikE230034O05Rik gene2051555575157714Rat
1311139Aireautoimmune regulator201136563011380636Rat
1311889Trpm2transient receptor potential cation channel, subfamily M, member 2201143406211482880Rat
1359387Tcp11t-complex 112076456197657222Rat
621635Bak1BCL2-antagonist/killer 12056096205618899Rat
71064Bag6BAG cochaperone 62051245125138084Rat
1311583Tead3TEA domain transcription factor 32079115627930949Rat
1359359Sapcd1suppressor APC domain containing 12050182645020375Rat
1303038G4G4 protein2051180065120332Rat
1310183Nudt3nudix hydrolase 32071557447208292Rat
1309887Kctd20potassium channel tetramerization domain containing 202062058976222818Rat
1309262Mtch1mitochondrial carrier 12069373416961165Rat
1308595Susd2sushi domain containing 2201396509813972547Rat
1308722YbeyybeY metalloendoribonuclease201291711112926587Rat
1305787Agpat31-acylglycerol-3-phosphate O-acyltransferase 3201106058411144806Rat
1308898Slc26a8solute carrier family 26 member 82058707145933151Rat
1306239Zfp523zinc finger protein 5232077507867786020Rat
1307993BcrBCR activator of RhoGEF and GTPase201442125014546406Rat
727881Ncr3natural cytotoxicity triggering receptor 32051701695175773Rat
1306685Pnpla1patatin-like phospholipase domain containing 12061010616143762Rat
1308587Slc37a1solute carrier family 37 member 1201002683910087691Rat
1308761Smarcb1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1201367995513702821Rat
1306975Btbd9BTB domain containing 92088992869253936Rat
1309840Fgd2FYVE, RhoGEF and PH domain containing 22069733566990026Rat
1310305Ubash3aubiquitin associated and SH3 domain containing, A2099411029986012Rat
1306065Snrpcsmall nuclear ribonucleoprotein polypeptide C2074094017427581Rat
1309233Srsf3serine and arginine rich splicing factor 32062882856298218Rat
1309867Slc5a4bsolute carrier family 5 (neutral amino acid transporters, system A), member 4b201349892613547945Rat
1307712Rsph1radial spoke head component 120999869810020719Rat
1309570Specc1lsperm antigen with calponin homology and coiled-coil domains 1-like201428747014393879Rat
1307113Zfand3zinc finger AN1-type containing 32086939898892572Rat
1308272Srpk1SRSF protein kinase 12058294125865877Rat
1307945Def6DEF6 guanine nucleotide exchange factor2077881207809011Rat
1309183Anks1aankyrin repeat and sterile alpha motif domain containing 1A2074845507636498Rat
1305983Pttg1ipPTTG1 interacting protein201174636911764097Rat
1309594Cfap410cilia and flagella associated protein 410201141742811424301Rat
1309455Stk38serine/threonine kinase 382062243006257613Rat
1307264Uhrf1bp1UHRF1 binding protein 12074312357475515Rat
1310135Tmprss3transmembrane serine protease 32099105229929705Rat
1303164Abhd16aabhydrolase domain containing 16A, phospholipase2050800705094935Rat
1303072AA926063AA926063gene2054864745498987Rat
1359627Zbtb22zinc finger and BTB domain containing 222054763455479900Rat
1359729Ggnbp1gametogenetin binding protein 12056189735625320Rat
1565398Col6a1collagen type VI alpha 1 chain201265791312676370Rat
1561557RGD1561557similar to chromosome 21 open reading frame 29201155489911556312Rat
1566039Umodl1uromodulin-like 12096435099703091Rat
1562732Gstt3glutathione S-transferase, theta 3201381779513825475Rat
1303162Ltblymphotoxin beta2051846315186476Rat
1564450Smim29small integral membrane protein 292071402417142316Rat
1566085RGD1566085similar to pyridoxal (pyridoxine, vitamin B6) kinase201088395210912870Rat
1561045FanceFA complementation group E2078889277906142Rat
1303003Gatd3aglutamine amidotransferase class 1 domain containing 3A201124435311252450Rat
1303137Vwa7von Willebrand factor A domain containing 72050085085019040Rat
1561022Sumo3small ubiquitin-like modifier 3201172648811737050Rat
1359103RT1-CE12RT1 class I, locus CE122049396214940253Rat
1560150Rab44RAB44, member RAS oncogene family2063638396410878Rat
1564162RGD1564162similar to Homo sapiens fetal lung specific expression unknown201366160313665073Rat
1303025Prrc2aproline-rich coiled-coil 2A2051398815155371Rat
1359118Kifc1kinesin family member C12055090595526175Rat
1311263Trappc10trafficking protein particle complex subunit 10201116829811228634Rat
1311257Fam207afamily with sequence similarity 207, member A201186314511896833Rat
1302955Ddah2dimethylarginine dimethylaminohydrolase 22050492605052573Rat
1563815RGD1563815similar to sodium-glucose cotransporter-like 1201360364413653006Rat
1311062Tulp1TUB like protein 12079316737943601Rat
1303064Ly6g6dlymphocyte antigen 6 family member G6D2050618495064768Rat
1309119Ppil1peptidylprolyl isomerase like 12065156386864571Rat
1564149RGD1564149similar to Protein C21orf58201292731012938891Rat
1559829Ilruninflammation and lipid regulator with UBA-like and NBR1-like domains2073313217397588Rat
1303304Gpank1G patch domain and ankyrin repeats 12051132325116382Rat
1359417Chchd10coiled-coil-helix-coiled-coil-helix domain containing 10201366504613666845Rat
1584104Ip6k3inositol hexakisphosphate kinase 32057334855754859Rat
1565519Prmt2protein arginine methyltransferase 2201315451313212613Rat
1582897Dip2adisco-interacting protein 2 homolog A201304405613127971Rat
1583076LOC687631similar to keratin associated protein 10-10201159672011597693Rat
1564987Tbc1d22bTBC1 domain family, member 22B2082160978278344Rat
1563561LOC499407LRRGT000972073263747361559Rat
1562578Spatc1lspermatogenesis and centriole associated 1-like201282578912835007Rat
1562791Icoslginducible T-cell co-stimulator ligand201133000011340307Rat
1582817Pwp2PWP2, small subunit processome component201122889211243204Rat
1565879Hsf2bpheat shock transcription factor 2 binding protein201075717210844177Rat
1563108Tspearthrombospondin-type laminin G domain and EAR repeats201150151011529210Rat
1584190U2af1U2 small nuclear RNA auxiliary factor 1201039665210407564Rat
1593740LOC686720similar to keratin associated protein 10-10201158820011589033Rat
1585327LOC687478similar to RAN, member RAS oncogene family2081828048192081Rat
1586373LOC689927similar to keratin associated protein 10-10201153818611538998Rat
1590969Pcdh15protocadherin related 15201495221315334745Rat
1590214Rpl13-ps1ribosomal protein L13, pseudogene 12049743324974574Rat
1561987RGD1561987similar to 60S ribosomal protein L9201470090314701718Rat
1585179Wdr4WD repeat domain 4201024057110264818Rat
1565460Zfp280bzinc finger protein 280B201356638113581215Rat
1590986Polr3d-ps1polymerase (RNA) III (DNA directed) polypeptide D, pseudogene 1201481203914814130Rat
1585322Tmem217transmembrane protein 2172081941718195098Rat
1588733Ccdc167coiled-coil domain containing 1672083670478384119Rat
1597373Derl3derlin 3201369210213707645Rat
1594406Cdk2ap1-ps6Cdk2ap1-ps6 pseudogene2053389055340102Rat
1594407Sacm2l-ps7Sacm2l-ps7 pseudogene2053348935335522Rat
1594409Sacm2l-ps5Sacm2l-ps5 pseudogene2053333875334540Rat
1594411Cdk2ap1-ps5Cdk2ap1-ps5 pseudogene2049099104910056Rat
1594413RT1-CE9-ps1RT1 class I, locus CE9, pseudogene 12053516135354630Rat
1594415LOC224733l-6LOC224733l-6 pseudogene2053450755345390Rat
1594419LOC224733l-4LOC224733l-4 pseudogene2049007204901022Rat
1594424Rps25-ps2ribosomal protein S25, pseudogene 22050782275078681Rat
1596076LOC690431similar to keratin associated protein 10-7201157978811580868Rat
1597190LOC288777similar to 40S ribosomal protein S15 (RIG protein)2084999988500510Rat
1595923RT1-A2RT1 class Ia, locus A22053749905378536Rat
1595924RT1-A1RT1 class Ia, locus A12054144635418012Rat
1595925Hspa1lheat shock protein family A (Hsp70) member 1 like2048799984965191Rat
1596091LOC690415hypothetical protein LOC690415201156143811562589Rat
1593284Hspa1aheat shock protein family A (Hsp70) member 1A2048758344881751Rat
1596098Rab36RAB36, member RAS oncogene family201455748514573939Rat
1594398Sacm2l-ps2Sacm2l-ps2 pseudogene2049238324924972Rat
1594399Sacm2l-ps1Sacm2l-ps1 pseudogene2053647465364806Rat
1594400LOC224733l-2LOC224733l-2 pseudogene2053709855371268Rat
1594401LOC224733l-1LOC224733l-1 pseudogene2054028255410595Rat
1591294Gstt4glutathione S-transferase, theta 4201377818513784813Rat
1594842SpdefSAM pointed domain containing ets transcription factor2072928237308053Rat
1592336Clpsl2colipase-like 22057915215794344Rat
1596048LOC690460similar to keratin associated protein 10-7201160479011605588Rat
1594734Nme2-ps1non-metastatic cells 2, protein (NM23B) expressed in, pseudogene 1201192842011929021Rat
1591066Bnip5BCL2 interacting protein 52061508116164148Rat
1597573Snrpd3small nuclear ribonucleoprotein D3 polypeptide201408056214095644Rat
1597571Gucd1guanylyl cyclase domain containing 1201409603014102901Rat
1596032LOC690478similar to keratin associated protein 10-7201165596711656884Rat
1597306LOC690386hypothetical protein LOC690386201154551311546046Rat
1591984Cdk2ap1-ps1Cdk2ap1-pseudogene 12053818725382222Rat
1591985Sec61-psSec61 pseudogene2055009555501293Rat
1591986Rps25-ps1ribosomal protein S25, pseudogene 12055071115507778Rat
1598231RT1-CE3RT1 class I, locus CE32049180474943603Rat
1598234RT1-CE4RT1 class I, locus CE42049185234921339Rat
1598536Lsm2LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated2049668174970567Rat
1595865Pcntpericentrin201294352313038615Rat
1595868RT1-CE5RT1 class I, locus CE52048927024896993Rat
1642907Mlnmotilin2065670926571791Rat
2319709LOC100361664keratin associated protein 12-1-like201162650311627475Rat
2319746Krtap12-2keratin associated protein 12-2201162061611620945Rat
2318639LOC100365646hypothetical protein LOC100365646201153013411531125Rat
2319481LOC100361793keratin associated protein 12-1-like201163380511634137Rat
2319535LOC100361739keratin associated protein 12-1-like201164379411644167Rat
2319572LOC100361702keratin associated protein 12-1-like201163809211638689Rat
2318441Lrrc75bleucine rich repeat containing 75B201405046514056670Rat
2322333LOC100360320rCG64293-like2052895215298449Rat
2321641LOC100364116ribosomal protein S20-like2084843108484711Rat
2321717Pxt1peroxisomal testis enriched protein 12061924406197228Rat
2325469Mir678microRNA 678201321242813212510Rat
6488401LOC100912209uncharacterized LOC100912209201235940612368482Rat
6501785LOC100909773eukaryotic translation initiation factor 3 subunit I-like2094632669465146Rat
6497687LOC100910615allatostatin-A receptor-like2064167416418398Rat
6500917LOC10090991140S ribosomal protein S20-like2084861428486668Rat
7489019Mir327microRNA 327201411064714110740Rat
7662094LOC102552617uncharacterized LOC1025526172076548957659731Rat
7631662LOC102546968RT1 class I histocompatibility antigen, AA alpha chain-like2053472755350135Rat
7613542LOC102547155uncharacterized LOC1025471552065047766508900Rat
7615076LOC102556116uncharacterized LOC102556116201393780113941158Rat
7558298LOC102551791uncharacterized LOC1025517912065994406602646Rat
7627017LOC102551672uncharacterized LOC1025516722065652076576825Rat
7627849LOC102550542uncharacterized LOC102550542201066779710670802Rat
7588778LOC102555910uncharacterized LOC1025559102059779435979905Rat
7570468LOC102548069uncharacterized LOC1025480692092543369257033Rat
7571524LOC102549864uncharacterized LOC1025498642048922064893176Rat
7574070LOC102551729uncharacterized LOC1025517292065818496593913Rat
7600967LOC102546553uncharacterized LOC102546553201238015512395292Rat
7579095LOC102556392uncharacterized LOC102556392201413988814159024Rat
7602713LOC102550935uncharacterized LOC102550935201112467111127931Rat
7549651LOC102556333uncharacterized LOC102556333201416422514172828Rat
7583376LOC102552984uncharacterized LOC102552984201365461213656598Rat
7551402LOC102548416transcription factor BTF3-like2087874428790421Rat
7690902LOC102552169uncharacterized LOC1025521692069486706950808Rat
7752662LOC102546627adenosylhomocysteinase-like201241959112422683Rat
7707260LOC102549726uncharacterized LOC1025497262048712644873982Rat
7685928LOC102556115uncharacterized LOC102556115201213451212141020Rat
7683538LOC102547357uncharacterized LOC1025473572070370197039414Rat
7739283LOC102550992uncharacterized LOC102550992201106227311063950Rat
7709328LOC102548328tubulin alpha-1B chain-like2088600158864625Rat
9072264LOC103690388uncharacterized LOC103690388201373929613743666Rat
9151994LOC103694394uncharacterized LOC103694394201023541910242744Rat
9200139LOC10369033160S ribosomal protein L13 pseudogene201358791013589372Rat
9123024LOC103694401uncharacterized LOC103694401201199021311992029Rat
9307255LOC103694398keratin-associated protein 10-1-like201164978411650675Rat
9356951LOC103694383uncharacterized LOC1036943832050833295084983Rat
9231102LOC103694388uncharacterized LOC1036943882052587395262421Rat
9315655LOC103694392uncharacterized LOC1036943922080372628041906Rat
9319304LOC103694391uncharacterized LOC1036943912073857107389640Rat
9279284LOC103694395uncharacterized LOC103694395201049021910494046Rat
9245373LOC103694402uncharacterized LOC103694402201321278813216972Rat
9287849LOC103694424protocadherin-15-like201496361114967308Rat
9333318LOC103694400uncharacterized LOC103694400201105901811085196Rat
9251702LOC103694389protein kish-A pseudogene2054907915491527Rat
9255690LOC103694387heat shock 70 kDa protein 1A/1B-like2049571714958507Rat
9255939LOC103694397keratin-associated protein 12-1-like201161234811613038Rat
9264061LOC10369439340S ribosomal protein S12 pseudogene2093821119382991Rat
9364288LOC103694384uncharacterized LOC1036943842056180945618720Rat
9423318LOC10369439960S ribosomal protein L19 pseudogene2083582048358994Rat
9415510LOC103694385LEM domain-containing protein 2-like2065579686558996Rat
11360274LOC108353238translation initiation factor IF-2-like201106029511061041Rat
11371581LOC108349038uncharacterized LOC1083490382067105126714137Rat
11442625LOC108349044uncharacterized LOC108349044201008819710091072Rat
11467216LOC108349041uncharacterized LOC1083490412079571647959165Rat
11436027LOC108349032uncharacterized LOC1083490322049831654990383Rat
11436627LOC108349043uncharacterized LOC1083490432070446667046103Rat
11458735LOC108349046uncharacterized LOC108349046201062325410624549Rat
11367742LOC108349040uncharacterized LOC1083490402077223777753279Rat
11371075LOC108349047uncharacterized LOC108349047201068227210692160Rat
11440932LOC108353256uncharacterized LOC1083532562068310186833968Rat
11419125LOC10835342440S ribosomal protein S28 pseudogene201376675113767096Rat
11396817LOC108353257uncharacterized LOC1083532572065343546536797Rat
11374777LOC108353237class I histocompatibility antigen, Non-RT1.A alpha-1 chain-like2053516215354278Rat
11408720LOC108349050ATP synthase subunit f, mitochondrial pseudogene201431484014318516Rat
11400510LOC108353255uncharacterized LOC1083532552052690075272798Rat
11379696LOC108353258uncharacterized LOC1083532582070947697097650Rat
11477312LOC108349049uncharacterized LOC108349049201283514312835926Rat
11481265LOC108349039uncharacterized LOC1083490392076806517695666Rat
11496771Smim40small integral membrane protein 402054886695489594Rat
11515843LOC108349048small nuclear ribonucleoprotein G pseudogene201170429111707268Rat
11485860LOC108353250uncharacterized LOC108353250201488717414912510Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
1576378D20Ztm11742048554184855591Ratregion
34749D20UW11522048554684855609Ratregion
11428D20Wox31152048554754855589Ratregion
5051913RH947301452048554774855611Ratregion
5052061RH948173302048565134856842Ratregion
5503560UniSTS:46395902048566824857612Ratregion
5087518PMC26794P36722048568774857548Ratregion
5031244PMC112151P14702048568784857347Ratregion
5031256PMC116546P11712048573494857519Ratregion
7387255rs81536182048574234857423Ratregion
5051911RH947291752048580164858193Ratregion
5075544RH1386551712048581794858350Ratregion
2303287D20Yum481922048606454860836Ratregion
5039362RH1276622102048614554861664Ratregion
5070201RH945301872048774404877626Ratregion
5041592RH1289461852048774754877659Ratregion
5087560PMC314357P14892048787454879233Ratregion
1639768D20Wox122032048814914881693Ratregion
7192235D20Wox122042048814914881694Ratregion
5087138BQ1943501662048988334898998Ratregion
5055647RH1439211712049214064921575Ratregion
11208D20Mgh32462049316924931821Ratregion
11209D20Wox42412049316974931821Ratregion
5046166RH1315962182049559624956179Ratregion
5025356RH1279991942049702654970458Ratregion
2303299D20Yum531972049772344977430Ratregion
5051276RH1345401812050075455008245Ratregion
5041826RH1290811632050182895018451Ratregion
5034480BG3725722062050208765021388Ratregion
5053205RH1425141002050326135032712Ratregion
45669D20Got41742050380275038199Ratregion
5506231Clic11552050488535049007Ratregion
5040094RH1280852132050523165052528Ratregion
5077722RH1399202152050530105053224Ratregion
2303289D20Yum522232050637095063931Ratregion
5506169UniSTS:4985067482050680965068843Ratregion
5071400RH1350601922050687045068895Ratregion
2303203D20Yum512212050797245079944Ratregion
5033455RH1388961202050863815086500Ratregion
5028591AI3260742072050942785094484Ratregion
5049826RH1337042142050946335094893Ratregion
5072778RH1370481862051087225108907Ratregion
5043344RH1299721902051087235108912Ratregion
5499619MARC_3347-3348:991937077:11952051088955109960Ratregion
2303233D20Yum501552051112745111428Ratregion
5047106RH1321371972051160995116295Ratregion
5081234RH1420432062051200695120274Ratregion
5060676BE0988921722051249205125092Ratregion
5500469RH12686602051336695134205Ratregion
5501516RH358712462051357345136186Ratregion
5034450AA9003791862051370455137635Ratregion
5502132MARC_5411-5412:996690356:11742051370625137640Ratregion
5502124MARC_5045-5046:996690083:15632051408385141400Ratregion
5501760MARC_11957-11958:1003854518:15572051504725151028Ratregion
5071940RH1353732052051613835162109Ratregion
5502146MARC_5857-5858:997299374:102051621925162779Ratregion
5507585Aif102051622025162960Ratregion
2303275D20Yum491852051665005166684Ratregion
5048384RH1328721962051752395175537Ratregion
5039362RH1276622102051861655186374Ratregion
2303287D20Yum481922051869935187184Ratregion
5075544RH1386551712051894795189650Ratregion
5051911RH947291752051896365189813Ratregion
5503560UniSTS:46395902051902175191147Ratregion
5087518PMC26794P36722051902815190952Ratregion
5031256PMC116546P11712051903105190480Ratregion
5031244PMC112151P14702051904825190951Ratregion
5052061RH948173302051909875191316Ratregion
5051913RH947301452051922185192352Ratregion
34749D20UW11522051922205192361Ratregion
1576378D20Ztm11742051922385192411Ratregion
11428D20Wox31152051922405192354Ratregion
5030335AI1132372152051933185193532Ratregion
5506310Tap214532051993115200763Ratregion
5048212RH1327731532052140275215221Ratregion
5047544RH1323881832052271445227326Ratregion
5072552RH1369152162052409935241208Ratregion
2303209D20Yum761052052429765243080Ratregion
5503354CGCb741762052656485265821Ratregion
2303227D20Yum781522052858405285991Ratregion
5039134RH1275322032053367495336951Ratregion
5080420RH1415691802053375135337692Ratregion
5085689BM3834641752053463625346535Ratregion
5072084RH1366422152054032685403482Ratregion
5087914H2-Q63612054148205415361Ratregion
5036334H2-D11562054176035417758Ratregion
5043582RH13010802054307375430936Ratregion
5032973RH1371622322054307825431016Ratregion
5084022AI2324781342054314475431580Ratregion
5079980RH1413132062054319985432203Ratregion
5080934RH1418682082054326065432812Ratregion
5503528UniSTS:46343714872054347485436234Ratregion
2303243D20Yum821512054395205439670Ratregion
5078716RH1405092222054472285447449Ratregion
5033661RH1396421882054472625447449Ratregion
5060654BE1041851042054481165448219Ratregion
5078896RH1406141912054585405458730Ratregion
5042402RH1294132052054669645467168Ratregion
5075694RH1387421372054675365467672Ratregion
5062480BE1067281572054684985468654Ratregion
5082835BF3902031652054745345474698Ratregion
5503258UniSTS:2376241832054763845476566Ratregion
5044600RH1306972172054765395476755Ratregion
5036051Zfp2974542054772405477693Ratregion
5057247AA9260632152054865105486724Ratregion
5041598RH1289491802054886815488860Ratregion
5074022RH1377741552054887045488858Ratregion
5058200BI2777091972054924285492624Ratregion
5503522UniSTS:46341511942055189645520157Ratregion
5500011UniSTS:2361251432055202945520557Ratregion
5041594RH1289472052055317135531915Ratregion
5084720AI0082581242055655775565700Ratregion
5040910RH1285541802055692695569448Ratregion
1626758D20Rhw122222056020325602253Ratregion
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5062800AW5345051512056099765610126Ratregion
1576369D20Ztm21592056156065615764Ratregion
5058656BE1022691692056185515618719Ratregion
5083787AI5995271982056382765638473Ratregion
5087530PMC275467P44792057105575711035Ratregion
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5042648RH1295601892057114375711625Ratregion
1626768D20Rhw131522057298765730027Ratregion
5062728AW5341061762057367035736878Ratregion
5064018BI2960251602057414345741593Ratregion
5057844BF3862482032057709335771135Ratregion
5076652RH1393001602057797665779925Ratregion
5065842AI0455032142058034935804085Ratregion
5072730RH1370201892058259065826094Ratregion
5039930RH1279892142058296185829831Ratregion
5040482RH1283091832058312315831419Ratregion
5063988BE1203831532058393135839465Ratregion
34280D20Mgh41062058753395875448Ratregion
5056515RH1444232712059441845944454Ratregion
5051104RH1344421992059916115991809Ratregion
5080028RH1413412172059948685995084Ratregion
5070728RH1346702102060281066028315Ratregion
5077912RH1400322152061351426135356Ratregion
5078590RH1404321682061353456135512Ratregion
5077912RH1400322152061432466143460Ratregion
5078590RH1404321682061434496143616Ratregion
5071484RH1351092022062215656221766Ratregion
5042584RH1295232102062225396222748Ratregion
5043810RH1302401902062245096224698Ratregion
5071568RH1351571812062398616240041Ratregion
5506624SFRS3_18756122062966896297300Ratregion
5081613BE1176321652062972076297371Ratregion
5044042RH1303761802062979256298104Ratregion
5036009PMC85267P13682063480916348458Ratregion
5087626PMC85267P24202063489716349390Ratregion
5035945PMC316389P14192063564596356877Ratregion
5501037PMC125030P13812063565136356893Ratregion
5500999PMC114802P23802063565146356893Ratregion
5501143PMC149170P14462063565446357571Ratregion
5504578PMC307617P22172063565896356805Ratregion
5501047PMC126110P12042063567186357503Ratregion
5044010RH1303582002063586406358839Ratregion
5062646BF403662922064028026402893Ratregion
5047366RH1322861922064103256410516Ratregion
5080926RH1418631892064204656420653Ratregion
5060532BE1102981582064239946424415Ratregion
5045602RH1312721872065086866508872Ratregion
5036063203J18-Sp61592065170336517191Ratregion
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5076652RH1393001602065451076545266Ratregion
41466D20Rat451252065674196567533Ratregion
5033919RH1406161842065928286593011Ratregion
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1637010D20Got1031442068461916846334Ratregion
5039768RH1278961822068653756865556Ratregion
5028191D17Mit1012132068690476869259Ratregion
5080472RH1415982072069048896905095Ratregion
5053931RH1429331032069161646916266Ratregion
5073020RH1371882202069325456932764Ratregion
5040990RH1286001822069374016937968Ratregion
5084822AI411563902069897406989829Ratregion
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5030027BI2798591062071312317131336Ratregion
5040032RH1280501942071398557140049Ratregion
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5085772BF4167341212071536917153811Ratregion
5078218RH1402122162071560277156242Ratregion
5053983RH1429631152071567237156837Ratregion
5033451RH1388811272072864987286624Ratregion
5057476AA8588701372072889207289058Ratregion
5057558BE0955671532072892637289415Ratregion
5063170BE1138371692072928797293047Ratregion
1634943D20Cebr21232073243407324462Ratregion
5086913BM3868771742074111407411313Ratregion
5064726BE1084001762074263967426571Ratregion
5041560RH1289272042074752247475427Ratregion
5059226BI2786881712074768847477054Ratregion
5077596RH1398472112075782907578500Ratregion
5086048AW5294181672075949787595144Ratregion
5051040RH1344032062076362017636406Ratregion
5077478RH1397791982076459167646747Ratregion
5056053RH1441561082077232247723331Ratregion
5054593RH1433131522077493947749545Ratregion
5040402RH1282631962077495467749740Ratregion
66472D20Uia21692077509197751084Ratregion
5064504BF411261962077582617758356Ratregion
5048462RH1329172152077857837785997Ratregion
1628583D20Cebr12078017467802063Ratregion
1628583D20Cebr12078017467802699Ratregion
5034566BE1196331622078472177847378Ratregion
5503827MARC_45796-45797:1102976080:113122078778217879132Ratregion
5505913UniSTS:49603314182078790227880439Ratregion
5501107PMC137182P91052078802937880397Ratregion
5503833MARC_45800-45801:1102973340:202078803947880930Ratregion
5052057RH948151562078820437882198Ratregion
5051168RH1344781832078831967883378Ratregion
5085645BI2767031572079059037906059Ratregion
5027517AW1257601512079116787911828Ratregion
5040050RH1280611802079316807931859Ratregion
1635374D20Got1192382079815327981769Ratregion
1631989D20Wox131662080344678034632Ratregion
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5070402AV0416581022081198308119931Ratregion
42102D20Arb71652081321618132329Ratregion
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5087524PMC275438P17922081654388166229Ratregion
5501067PMC133764P31582081656638165820Ratregion
5501069PMC133764P41372081656848165820Ratregion
5503506Pim14922081658128166303Ratregion
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40684D20Rat501102086480728648179Ratregion
37632D20Rat491282086543418654464Ratregion
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5504194Rsph1641201000718510007825Ratregion
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7206296Gtf2h565201016931710169420Ratregion
5501954MARC_20758-20759:1025103834:10201021023110211076Ratregion
5034858AI169470203201021605010216252Ratregion
5073032RH137195217201024080910241020Ratregion
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5502481RH1250590201429474814295811Ratregion
45676D20Got13183201441145914411641Ratregion
5046316RH131682181201441882314419003Ratregion
5059060BE102779156201445577614455931Ratregion
5058634BE102216179201448841614488594Ratregion
38436D20Rat33200201450217214502370Ratregion
5062572BE106868184201454379914543982Ratregion
5502729BCR88201454510414545191Ratregion
5070466AW047545117201455650214556618Ratregion
5074522RH138065173201457096014571132Ratregion
5089447AU049161131201457457014574700Ratregion
5056583RH144462137201459319014593326Ratregion
5070039RH94432197201459438914594585Ratregion
1630863D20Wox22166201464766414647829Ratregion
5038638BE553943122201468655714686678Ratregion
5068348AU047200122201483696514837086Ratregion
5055963RH144104176201494673814946913Ratregion
5048144RH132733152201495031114950462Ratregion
45679D20Got14226201499103514991260Ratregion
5088937AU04885894201505040515050498Ratregion
40318D20Rat60158201505041015050565Ratregion
Position Markers

Flank 1: (D20Wox3)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,621,656 - 3,621,771 (+)MAPPER
mRatBN7.2203,621,656 - 3,621,771 (-)MAPPER
Rnor_6.0205,192,240 - 5,192,354NCBI
Rnor_6.0204,855,475 - 4,855,589NCBI
Rnor_5.0206,935,875 - 6,935,989UniSTS
RGSC_v3.4203,660,646 - 3,660,760UniSTS
RGSC_v3.1203,660,872 - 3,660,987RGD
Celera204,403,718 - 4,403,832UniSTS
Cytogenetic Map20p12UniSTS
Peak: (D20Wox3)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,621,656 - 3,621,771 (+)MAPPER
mRatBN7.2203,621,656 - 3,621,771 (-)MAPPER
Rnor_6.0205,192,240 - 5,192,354NCBI
Rnor_6.0204,855,475 - 4,855,589NCBI
Rnor_5.0206,935,875 - 6,935,989UniSTS
RGSC_v3.4203,660,646 - 3,660,760UniSTS
RGSC_v3.1203,660,872 - 3,660,987RGD
Celera204,403,718 - 4,403,832UniSTS
Cytogenetic Map20p12UniSTS
Flank 2: (D20Rat60)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22014,100,894 - 14,101,050 (+)MAPPER
Rnor_6.02015,050,410 - 15,050,565NCBI
Rnor_5.02017,237,299 - 17,237,454UniSTS
RGSC_v3.42014,605,696 - 14,605,852RGD
RGSC_v3.42014,605,697 - 14,605,852UniSTS
RGSC_v3.12014,612,602 - 14,612,758RGD
Celera2015,551,025 - 15,551,180UniSTS
FHH x ACI Map206.8999RGD
FHH x ACI Map206.8999UniSTS
Cytogenetic Map20p12UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724519Bp144Blood pressure QTL 1440.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2015192000Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124652101Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125653396Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20126305996Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20126305996Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20127357423Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20128375393Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20128375393Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20128375393Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20128375393Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20128375393Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20133300419Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20137550487Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20137550487Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20201865447018654Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2020187706567419Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20299970747999707Rat
61472Aia1Adjuvant induced arthritis QTL 1180.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2031518156896013Rat
61448Ciaa1CIA Autoantibody QTL 1300.001blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)2031518156896013Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20340211127968216Rat
7175096Tcs1T cell selection QTL 1T cell selectionexpression2039105555533640Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2040391135875448Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20403911318872273Rat
4889857Pur27Proteinuria QTL 2712.20.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20403911318872273Rat
737973Pia21Pristane induced arthritis QTL 214.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2040393174855475Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674)20410895649108956Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2048554689899946Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RChigh CD8 T cell count to CD45RClow CD8 T cell count ratio (CMO:0001990)20485546810800530Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20485547515050565Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20587544818739210Rat
1581577Pur15Proteinuria QTL 154.380.0002total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)20865434118872273Rat
4889870Pur30Proteinuria QTL 30190.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20865434130991290Rat
631265Iresp1Immunoglobin response QTL18.3blood anti-double stranded DNA antibody amount (VT:0004762)serum anti-DNA antibody level (CMO:0001533)20965564214411641Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201383430956205956Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201383430956205956Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Cia1


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-14 Cia1  Collagen induced arthritis QTL 1    Type II Collagen induced arthritis QTL 1  Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_gene 244 known and 26 novel genes were found in an analysis based on PubMed and OMIM data 2307198
qtl_gene whole genome analysis using PGMapper revealed Tnf, Mif, Tap2, Tap1, Hla-dma, Hla-dmb and Nfkbil1 as RA associated genes and Tnf, Mif, Tap2, Tap1, Hla-dma, Hla-dmb and Nfkbil1 as RA associated polymorphism either in coding or regulatory region 2300074