Ccdc167 (coiled-coil domain containing 167) - Rat Genome Database

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Gene: Ccdc167 (coiled-coil domain containing 167) Rattus norvegicus
Analyze
Symbol: Ccdc167
Name: coiled-coil domain containing 167
RGD ID: 1588733
Description: Predicted to be located in membrane. Orthologous to human CCDC167 (coiled-coil domain containing 167); INTERACTS WITH 17beta-estradiol; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: coiled-coil domain-containing protein 167; hypothetical protein LOC689755; LOC689755; uncharacterized protein LOC689755
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8207,768,425 - 7,783,181 (-)NCBIGRCr8
mRatBN7.2207,763,927 - 7,782,090 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl207,751,782 - 7,781,613 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx208,469,732 - 8,484,273 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0207,830,894 - 7,845,435 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0208,304,032 - 8,318,679 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0208,367,047 - 8,384,119 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl208,369,331 - 8,384,088 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02010,566,863 - 10,583,932 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4208,014,954 - 8,029,711 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera209,304,940 - 9,319,702 (-)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Ccdc167
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8207,768,425 - 7,783,181 (-)NCBIGRCr8
mRatBN7.2207,763,927 - 7,782,090 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl207,751,782 - 7,781,613 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx208,469,732 - 8,484,273 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0207,830,894 - 7,845,435 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0208,304,032 - 8,318,679 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0208,367,047 - 8,384,119 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl208,369,331 - 8,384,088 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02010,566,863 - 10,583,932 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4208,014,954 - 8,029,711 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera209,304,940 - 9,319,702 (-)NCBICelera
Cytogenetic Map20p12NCBI
CCDC167
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38637,482,938 - 37,499,893 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl637,482,938 - 37,499,893 (-)EnsemblGRCh38hg38GRCh38
GRCh37637,450,714 - 37,467,669 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36637,558,674 - 37,575,678 (-)NCBINCBI36Build 36hg18NCBI36
Celera639,005,680 - 39,022,691 (-)NCBICelera
Cytogenetic Map6p21.2NCBI
HuRef637,169,339 - 37,186,355 (-)NCBIHuRef
CHM1_1637,452,446 - 37,469,473 (-)NCBICHM1_1
T2T-CHM13v2.0637,306,479 - 37,323,454 (-)NCBIT2T-CHM13v2.0
Ccdc167
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391729,914,951 - 29,935,991 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1729,906,331 - 29,936,018 (-)EnsemblGRCm39 Ensembl
GRCm381729,695,977 - 29,717,041 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1729,687,357 - 29,717,044 (-)EnsemblGRCm38mm10GRCm38
MGSCv371729,832,922 - 29,853,962 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1730,230,988 - 30,252,123 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1715.48NCBI
Ccdc167
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554375,707,236 - 5,724,313 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554375,707,236 - 5,720,541 (+)NCBIChiLan1.0ChiLan1.0
CCDC167
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2551,955,246 - 51,972,278 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1647,825,361 - 47,842,398 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0637,048,378 - 37,065,412 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1638,239,756 - 38,256,784 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl638,240,022 - 38,244,443 (-)Ensemblpanpan1.1panPan2
CCDC167
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1126,506,463 - 6,524,832 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl126,506,463 - 6,524,744 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha126,524,344 - 6,542,523 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0126,971,398 - 6,989,407 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl126,971,398 - 6,989,418 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1126,507,406 - 6,525,722 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0126,589,709 - 6,607,707 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0126,688,837 - 6,706,885 (-)NCBIUU_Cfam_GSD_1.0
Ccdc167
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494641,974,320 - 41,988,972 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647621,971,180 - 21,990,711 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647621,971,240 - 21,986,896 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC167
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl733,064,971 - 33,085,737 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1733,064,967 - 33,085,733 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2737,970,117 - 37,990,894 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC167
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11734,641,096 - 34,658,735 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604437,434,634 - 37,452,282 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc167
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475420,585,354 - 20,602,492 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475420,585,320 - 20,617,221 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccdc167
122 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:72
Interacting mature miRNAs:77
Transcripts:ENSRNOT00000000639
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036216499243559Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362164910078919Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20460660717617956Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20460660717617956Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20669170617489458Rat

Markers in Region
RH129918  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2207,768,799 - 7,769,009 (+)MAPPERmRatBN7.2
Rnor_6.0208,371,277 - 8,371,486NCBIRnor6.0
Rnor_5.02010,571,093 - 10,571,302UniSTSRnor5.0
RGSC_v3.4208,016,900 - 8,017,109UniSTSRGSC3.4
Celera209,306,886 - 9,307,095UniSTS
RH 3.4 Map2094.1UniSTS
Cytogenetic Map20p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 31 21 14 16 14 23 12 25 11
Low 1 12 36 27 3 27 8 11 51 23 16 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000000639   ⟹   ENSRNOP00000000639
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl207,763,276 - 7,781,613 (-)Ensembl
Rnor_6.0 Ensembl208,369,331 - 8,384,088 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100407   ⟹   ENSRNOP00000096672
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl207,751,782 - 7,781,613 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100757   ⟹   ENSRNOP00000085384
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl207,759,250 - 7,781,613 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000109836   ⟹   ENSRNOP00000079485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl207,759,250 - 7,781,613 (-)Ensembl
RefSeq Acc Id: NM_001109548   ⟹   NP_001103018
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,768,425 - 7,783,181 (-)NCBI
mRatBN7.2207,766,854 - 7,781,613 (-)NCBI
Rnor_6.0208,369,331 - 8,384,088 (-)NCBI
Rnor_5.02010,566,863 - 10,583,932 (-)NCBI
RGSC_v3.4208,014,954 - 8,029,711 (-)RGD
Celera209,304,940 - 9,319,702 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001103018 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL96978 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000000639
  ENSRNOP00000000639.6
  ENSRNOP00000079485.1
  ENSRNOP00000085384.1
  ENSRNOP00000096672.1
RefSeq Acc Id: NP_001103018   ⟸   NM_001109548
- UniProtKB: D3ZGM5 (UniProtKB/TrEMBL),   A6JJW2 (UniProtKB/TrEMBL),   A6JJW0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000000639   ⟸   ENSRNOT00000000639
RefSeq Acc Id: ENSRNOP00000079485   ⟸   ENSRNOT00000109836
RefSeq Acc Id: ENSRNOP00000096672   ⟸   ENSRNOT00000100407
RefSeq Acc Id: ENSRNOP00000085384   ⟸   ENSRNOT00000100757

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZGM5-F1-model_v2 AlphaFold D3ZGM5 1-97 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701465
Promoter ID:EPDNEW_R11989
Type:multiple initiation site
Name:Ccdc167_1
Description:coiled-coil domain containing 167
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0208,384,080 - 8,384,140EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1588733 AgrOrtholog
BioCyc Gene G2FUF-4364 BioCyc
Ensembl Genes ENSRNOG00000000531 Ensembl
  ENSRNOG00000068717 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000639 ENTREZGENE
  ENSRNOT00000000639.6 UniProtKB/TrEMBL
  ENSRNOT00000100407.1 UniProtKB/TrEMBL
  ENSRNOT00000100757.1 UniProtKB/TrEMBL
  ENSRNOT00000109836.1 UniProtKB/TrEMBL
InterPro CCDC-167 UniProtKB/TrEMBL
KEGG Report rno:689755 UniProtKB/TrEMBL
NCBI Gene 689755 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 167 UniProtKB/TrEMBL
  PTHR31759 UniProtKB/TrEMBL
Pfam CCDC-167 UniProtKB/TrEMBL
PhenoGen Ccdc167 PhenoGen
RatGTEx ENSRNOG00000000531 RatGTEx
  ENSRNOG00000068717 RatGTEx
UniProt A0A8I5ZMX3_RAT UniProtKB/TrEMBL
  A0A8I6A193_RAT UniProtKB/TrEMBL
  A0A8I6AQQ9_RAT UniProtKB/TrEMBL
  A6JJW0 ENTREZGENE, UniProtKB/TrEMBL
  A6JJW2 ENTREZGENE, UniProtKB/TrEMBL
  D3ZGM5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-02 Ccdc167  coiled-coil domain containing 167  LOC689755  hypothetical protein LOC689755  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED