Ccdc167 (coiled-coil domain containing 167) - Rat Genome Database

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Gene: Ccdc167 (coiled-coil domain containing 167) Mus musculus
Analyze
Symbol: Ccdc167
Name: coiled-coil domain containing 167
RGD ID: 1609308
MGI Page MGI
Description: Predicted to be located in membrane. Orthologous to human CCDC167 (coiled-coil domain containing 167).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110021J02Rik; coiled-coil domain-containing protein 167; transmembrane and coiled-coil domain-containing protein C6orf129 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm15164  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391729,914,951 - 29,935,991 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1729,906,331 - 29,936,018 (-)EnsemblGRCm39 Ensembl
GRCm381729,695,977 - 29,717,041 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1729,687,357 - 29,717,044 (-)EnsemblGRCm38mm10GRCm38
MGSCv371729,832,922 - 29,853,962 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1730,230,988 - 30,252,123 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1715.48NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15747579   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693  


Genomics

Comparative Map Data
Ccdc167
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391729,914,951 - 29,935,991 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1729,906,331 - 29,936,018 (-)EnsemblGRCm39 Ensembl
GRCm381729,695,977 - 29,717,041 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1729,687,357 - 29,717,044 (-)EnsemblGRCm38mm10GRCm38
MGSCv371729,832,922 - 29,853,962 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1730,230,988 - 30,252,123 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1715.48NCBI
CCDC167
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38637,482,938 - 37,499,893 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl637,482,938 - 37,499,893 (-)EnsemblGRCh38hg38GRCh38
GRCh37637,450,714 - 37,467,669 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36637,558,674 - 37,575,678 (-)NCBINCBI36Build 36hg18NCBI36
Celera639,005,680 - 39,022,691 (-)NCBICelera
Cytogenetic Map6p21.2NCBI
HuRef637,169,339 - 37,186,355 (-)NCBIHuRef
CHM1_1637,452,446 - 37,469,473 (-)NCBICHM1_1
T2T-CHM13v2.0637,306,479 - 37,323,454 (-)NCBIT2T-CHM13v2.0
Ccdc167
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8207,768,425 - 7,783,181 (-)NCBIGRCr8
mRatBN7.2207,763,927 - 7,782,090 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl207,751,782 - 7,781,613 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx208,469,732 - 8,484,273 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0207,830,894 - 7,845,435 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0208,304,032 - 8,318,679 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0208,367,047 - 8,384,119 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl208,369,331 - 8,384,088 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02010,566,863 - 10,583,932 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4208,014,954 - 8,029,711 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera209,304,940 - 9,319,702 (-)NCBICelera
Cytogenetic Map20p12NCBI
Ccdc167
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554375,707,236 - 5,724,313 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554375,707,236 - 5,720,541 (+)NCBIChiLan1.0ChiLan1.0
CCDC167
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2551,955,246 - 51,972,278 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1647,825,361 - 47,842,398 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0637,048,378 - 37,065,412 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1638,239,756 - 38,256,784 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl638,240,022 - 38,244,443 (-)Ensemblpanpan1.1panPan2
CCDC167
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1126,506,463 - 6,524,832 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl126,506,463 - 6,524,744 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha126,524,344 - 6,542,523 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0126,971,398 - 6,989,407 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl126,971,398 - 6,989,418 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1126,507,406 - 6,525,722 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0126,589,709 - 6,607,707 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0126,688,837 - 6,706,885 (-)NCBIUU_Cfam_GSD_1.0
Ccdc167
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494641,974,320 - 41,988,972 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647621,971,180 - 21,990,711 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647621,971,240 - 21,986,896 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC167
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl733,064,971 - 33,085,737 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1733,064,967 - 33,085,733 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2737,970,117 - 37,990,894 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC167
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11734,641,096 - 34,658,735 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604437,434,634 - 37,452,282 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc167
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475420,585,354 - 20,602,492 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475420,585,320 - 20,617,221 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccdc167
760 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3238
Count of miRNA genes:828
Interacting mature miRNAs:1112
Transcripts:ENSMUST00000123502, ENSMUST00000128751, ENSMUST00000129091, ENSMUST00000131807, ENSMUST00000137079, ENSMUST00000174437
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172787811943885114Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171683545533819843Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
12904013Cfq12_mconditioned fear QTL 12 (mouse)172682878130664955Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172771579245622654Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse
11038694Pas19_mpulmonary adenoma susceptibility 19 (mouse)172971116434754437Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172650533741105037Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172558491443976235Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse

Markers in Region
AI451264  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381729,703,200 - 29,703,291UniSTSGRCm38
MGSCv371729,840,145 - 29,840,236UniSTSGRCm37
Celera1730,238,211 - 30,238,302UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Whitehead/MRC_RH17369.07UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000123502   ⟹   ENSMUSP00000119013
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,916,549 - 29,935,959 (-)Ensembl
GRCm38.p6 Ensembl1729,697,575 - 29,716,985 (-)Ensembl
Ensembl Acc Id: ENSMUST00000128751   ⟹   ENSMUSP00000123612
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,922,306 - 29,936,018 (-)Ensembl
GRCm38.p6 Ensembl1729,703,332 - 29,717,044 (-)Ensembl
Ensembl Acc Id: ENSMUST00000129091   ⟹   ENSMUSP00000116591
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,912,434 - 29,935,983 (-)Ensembl
GRCm38.p6 Ensembl1729,693,460 - 29,717,009 (-)Ensembl
Ensembl Acc Id: ENSMUST00000131807   ⟹   ENSMUSP00000120238
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,918,973 - 29,935,937 (-)Ensembl
GRCm38.p6 Ensembl1729,699,999 - 29,716,963 (-)Ensembl
Ensembl Acc Id: ENSMUST00000137079   ⟹   ENSMUSP00000115603
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,906,331 - 29,935,993 (-)Ensembl
GRCm38.p6 Ensembl1729,687,357 - 29,717,019 (-)Ensembl
Ensembl Acc Id: ENSMUST00000174437
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,931,947 - 29,935,938 (-)Ensembl
GRCm38.p6 Ensembl1729,712,973 - 29,716,964 (-)Ensembl
Ensembl Acc Id: ENSMUST00000234438
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,923,387 - 29,935,982 (-)Ensembl
GRCm38.p6 Ensembl1729,704,413 - 29,717,008 (-)Ensembl
RefSeq Acc Id: NM_001163741   ⟹   NP_001157213
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391729,914,951 - 29,935,991 (-)NCBI
GRCm381729,695,977 - 29,717,017 (-)ENTREZGENE
MGSCv371729,832,922 - 29,853,962 (-)RGD
Celera1730,230,988 - 30,252,123 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_026782   ⟹   NP_081058
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391729,922,306 - 29,935,991 (-)NCBI
GRCm381729,703,332 - 29,717,017 (-)NCBI
MGSCv371729,832,922 - 29,853,962 (-)RGD
Celera1730,230,988 - 30,252,123 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_001157213   ⟸   NM_001163741
- Peptide Label: isoform 1
- UniProtKB: Q9D162 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_081058   ⟸   NM_026782
- Peptide Label: isoform 2
- UniProtKB: Q8C3L9 (UniProtKB/Swiss-Prot),   Q8BQL8 (UniProtKB/Swiss-Prot),   Q8R1Y8 (UniProtKB/Swiss-Prot),   Q9D162 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000120238   ⟸   ENSMUST00000131807
Ensembl Acc Id: ENSMUSP00000116591   ⟸   ENSMUST00000129091
Ensembl Acc Id: ENSMUSP00000123612   ⟸   ENSMUST00000128751
Ensembl Acc Id: ENSMUSP00000119013   ⟸   ENSMUST00000123502
Ensembl Acc Id: ENSMUSP00000115603   ⟸   ENSMUST00000137079

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D162-F1-model_v2 AlphaFold Q9D162 1-97 view protein structure

Promoters
RGD ID:13675438
Promoter ID:EPDNEW_M21867
Type:initiation region
Name:Ccdc167_1
Description:Mus musculus coiled-coil domain containing 167 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381729,716,985 - 29,717,045EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915847 AgrOrtholog
Ensembl Genes ENSMUSG00000024018 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000123502.8 UniProtKB/Swiss-Prot
  ENSMUST00000128751 ENTREZGENE
  ENSMUST00000128751.3 UniProtKB/Swiss-Prot
  ENSMUST00000129091 ENTREZGENE
  ENSMUST00000129091.9 UniProtKB/Swiss-Prot
  ENSMUST00000131807.8 UniProtKB/TrEMBL
  ENSMUST00000137079.9 UniProtKB/TrEMBL
InterPro CCDC-167 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:68597 UniProtKB/Swiss-Prot
MGD MGI:1915847 ENTREZGENE
NCBI Gene 68597 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 167 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR31759 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CCDC-167 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ccdc167 PhenoGen
UniProt CC167_MOUSE UniProtKB/Swiss-Prot
  D6RG69_MOUSE UniProtKB/TrEMBL
  F6WM75_MOUSE UniProtKB/TrEMBL
  Q8BQL8 ENTREZGENE
  Q8C3L9 ENTREZGENE
  Q8R1Y8 ENTREZGENE
  Q9D162 ENTREZGENE
UniProt Secondary Q8BQL8 UniProtKB/Swiss-Prot
  Q8C3L9 UniProtKB/Swiss-Prot
  Q8R1Y8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-09-25 Ccdc167  coiled-coil domain containing 167  1110021J02Rik  RIKEN cDNA 1110021J02 gene  Symbol and/or name change 5135510 APPROVED